Atomistry » Fluorine » PDB 4csj-4dbq » 4d43
Atomistry »
  Fluorine »
    PDB 4csj-4dbq »
      4d43 »

Fluorine in PDB 4d43: Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol

Enzymatic activity of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol

All present enzymatic activity of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol:
1.3.1.10;

Protein crystallography data

The structure of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol, PDB code: 4d43 was solved by J.Schiebel, A.Chang, P.J.Tonge, C.A.Sotriffer, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.68 / 2.15
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 89.180, 94.880, 94.900, 98.45, 111.49, 97.30
R / Rfree (%) 17.041 / 23.031

Other elements in 4d43:

The structure of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol (pdb code 4d43). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol, PDB code: 4d43:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 1 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1259

b:19.2
occ:1.00
F A:9W71259 0.0 19.2 1.0
C13 A:9W71259 1.3 15.9 1.0
C12 A:9W71259 2.3 16.8 1.0
C2 A:9W71259 2.4 14.1 1.0
C1 A:9W71259 2.9 12.4 1.0
O7N A:NAP1258 2.9 16.6 1.0
CE1 A:PHE204 3.1 19.2 1.0
CB A:ALA198 3.2 20.3 1.0
C7N A:NAP1258 3.3 17.4 1.0
CA A:ALA198 3.4 20.9 1.0
C A:9W71259 3.4 13.5 1.0
N7N A:NAP1258 3.5 16.6 1.0
C5 A:9W71259 3.6 15.8 1.0
C3 A:9W71259 3.6 13.4 1.0
CD1 A:PHE204 3.6 21.8 1.0
C4 A:9W71259 4.1 16.2 1.0
CZ A:PHE204 4.1 19.9 1.0
CG2 A:VAL201 4.2 21.9 1.0
C3N A:NAP1258 4.2 16.3 1.0
N A:ALA198 4.2 20.3 1.0
O A:ILE193 4.4 13.7 1.0
O A:ALA198 4.4 25.3 1.0
C A:ALA198 4.4 23.9 1.0
CB A:VAL201 4.6 23.6 1.0
O1 A:9W71259 4.8 20.8 1.0
C4N A:NAP1258 4.8 18.9 1.0
CG A:PHE204 4.8 24.6 1.0
C2N A:NAP1258 4.9 15.1 1.0
C A:SER197 5.0 20.8 1.0
N A:ILE193 5.0 14.7 1.0

Fluorine binding site 2 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 2 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1259

b:21.6
occ:1.00
F B:9W71259 0.0 21.6 1.0
C13 B:9W71259 1.3 15.5 1.0
C12 B:9W71259 2.3 16.2 1.0
C2 B:9W71259 2.3 19.1 1.0
C1 B:9W71259 2.8 17.1 1.0
O7N B:NAP1258 3.1 17.8 1.0
CB B:ALA198 3.2 17.8 1.0
CA B:ALA198 3.3 20.0 1.0
C7N B:NAP1258 3.4 17.4 1.0
CE2 B:PHE204 3.4 18.1 1.0
C B:9W71259 3.5 16.2 1.0
CD2 B:PHE204 3.5 19.7 1.0
C5 B:9W71259 3.6 18.9 1.0
C3 B:9W71259 3.6 22.4 1.0
N7N B:NAP1258 3.8 19.2 1.0
C4 B:9W71259 4.1 23.0 1.0
CG2 B:VAL201 4.2 16.1 1.0
C3N B:NAP1258 4.2 13.9 1.0
N B:ALA198 4.2 18.5 1.0
O B:ALA198 4.4 25.3 1.0
O B:ILE193 4.4 19.5 1.0
C B:ALA198 4.4 22.6 1.0
CZ B:PHE204 4.5 16.6 1.0
CB B:VAL201 4.6 17.0 1.0
CG B:PHE204 4.7 24.2 1.0
O1 B:9W71259 4.7 20.9 1.0
O B:SER197 4.8 19.0 1.0
C4N B:NAP1258 4.8 19.2 1.0
C B:SER197 4.8 18.4 1.0
C2N B:NAP1258 4.9 15.5 1.0

Fluorine binding site 3 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 3 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1259

b:22.0
occ:1.00
F C:9W71259 0.0 22.0 1.0
C13 C:9W71259 1.3 15.2 1.0
C12 C:9W71259 2.3 18.4 1.0
C2 C:9W71259 2.3 19.9 1.0
C1 C:9W71259 2.9 12.9 1.0
O7N C:NAP1258 3.1 23.5 1.0
CE1 C:PHE204 3.1 21.9 1.0
CB C:ALA198 3.3 23.3 1.0
CA C:ALA198 3.3 23.8 1.0
C7N C:NAP1258 3.4 20.6 1.0
C C:9W71259 3.4 13.2 1.0
CD1 C:PHE204 3.5 25.7 1.0
C5 C:9W71259 3.6 20.2 1.0
C3 C:9W71259 3.6 20.0 1.0
N7N C:NAP1258 3.7 13.5 1.0
CG2 C:VAL201 4.0 24.7 1.0
C4 C:9W71259 4.1 19.9 1.0
CZ C:PHE204 4.1 22.3 1.0
N C:ALA198 4.2 23.4 1.0
C3N C:NAP1258 4.2 17.5 1.0
O C:ILE193 4.4 18.0 1.0
O C:ALA198 4.4 26.9 1.0
C C:ALA198 4.4 26.2 1.0
CB C:VAL201 4.6 26.3 1.0
CG C:PHE204 4.6 29.0 1.0
O1 C:9W71259 4.8 20.2 1.0
O C:SER197 4.9 25.8 1.0
C C:SER197 4.9 23.9 1.0
C2N C:NAP1258 4.9 18.6 1.0
C4N C:NAP1258 4.9 21.1 1.0

Fluorine binding site 4 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 4 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1258

b:24.7
occ:1.00
F D:9W71258 0.0 24.7 1.0
C13 D:9W71258 1.3 17.3 1.0
C12 D:9W71258 2.3 21.3 1.0
C2 D:9W71258 2.3 16.5 1.0
C1 D:9W71258 2.9 15.3 1.0
CE1 D:PHE204 3.1 16.4 1.0
O7N D:NAP1257 3.2 21.0 1.0
CB D:ALA198 3.3 21.2 1.0
CA D:ALA198 3.4 22.9 1.0
C D:9W71258 3.4 16.2 1.0
C7N D:NAP1257 3.5 21.1 1.0
CD1 D:PHE204 3.5 19.0 1.0
C5 D:9W71258 3.6 20.3 1.0
C3 D:9W71258 3.6 16.5 1.0
N7N D:NAP1257 3.7 19.6 1.0
C4 D:9W71258 4.1 16.9 1.0
CZ D:PHE204 4.2 20.0 1.0
N D:ALA198 4.2 22.9 1.0
CG2 D:VAL201 4.2 25.0 1.0
O D:ILE193 4.3 15.8 1.0
C3N D:NAP1257 4.4 20.9 1.0
C D:ALA198 4.6 25.9 1.0
CB D:VAL201 4.6 25.8 1.0
O D:ALA198 4.6 26.9 1.0
O1 D:9W71258 4.7 20.2 1.0
CG D:PHE204 4.8 27.0 1.0
C D:SER197 4.9 23.1 1.0
O D:SER197 5.0 21.3 1.0
N D:ILE193 5.0 15.4 1.0
C4N D:NAP1257 5.0 18.9 1.0

Fluorine binding site 5 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 5 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F1259

b:19.9
occ:1.00
F E:9W71259 0.0 19.9 1.0
C13 E:9W71259 1.3 19.4 1.0
C12 E:9W71259 2.3 17.2 1.0
C2 E:9W71259 2.3 15.7 1.0
C1 E:9W71259 2.9 16.5 1.0
O7N E:NAP1258 2.9 23.3 1.0
CE1 E:PHE204 3.1 17.3 1.0
CB E:ALA198 3.3 20.6 1.0
C7N E:NAP1258 3.4 16.2 1.0
CA E:ALA198 3.4 21.8 1.0
C E:9W71259 3.4 16.7 1.0
CD1 E:PHE204 3.5 18.8 1.0
C5 E:9W71259 3.6 19.2 1.0
C3 E:9W71259 3.6 15.1 1.0
N7N E:NAP1258 3.6 14.7 1.0
C4 E:9W71259 4.1 18.8 1.0
CZ E:PHE204 4.2 20.3 1.0
N E:ALA198 4.2 20.6 1.0
C3N E:NAP1258 4.3 17.6 1.0
CG2 E:VAL201 4.3 21.5 1.0
O E:ALA198 4.4 26.9 1.0
C E:ALA198 4.5 24.3 1.0
O E:ILE193 4.5 14.6 1.0
CB E:VAL201 4.7 22.6 1.0
CG E:PHE204 4.7 20.7 1.0
O1 E:9W71259 4.7 21.5 1.0
C4N E:NAP1258 4.9 13.5 1.0
O E:SER197 4.9 20.9 1.0
C E:SER197 4.9 22.4 1.0
C2N E:NAP1258 5.0 18.9 1.0

Fluorine binding site 6 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 6 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F1259

b:23.9
occ:1.00
F F:9W71259 0.0 23.9 1.0
C13 F:9W71259 1.3 18.1 1.0
C12 F:9W71259 2.3 17.8 1.0
C2 F:9W71259 2.3 17.9 1.0
C1 F:9W71259 2.9 14.2 1.0
O7N F:NAP1258 3.1 19.7 1.0
CB F:ALA198 3.2 21.7 1.0
CE2 F:PHE204 3.3 21.0 1.0
CA F:ALA198 3.3 22.4 1.0
C7N F:NAP1258 3.4 19.0 1.0
CD2 F:PHE204 3.5 25.1 1.0
C F:9W71259 3.5 13.0 1.0
C5 F:9W71259 3.6 17.2 1.0
C3 F:9W71259 3.6 23.6 1.0
N7N F:NAP1258 3.7 16.1 1.0
CG2 F:VAL201 4.0 24.9 1.0
C4 F:9W71259 4.1 24.2 1.0
N F:ALA198 4.2 21.7 1.0
C3N F:NAP1258 4.2 17.9 1.0
CZ F:PHE204 4.4 21.7 1.0
O F:ILE193 4.4 17.1 1.0
C F:ALA198 4.4 24.6 1.0
O F:ALA198 4.4 26.0 1.0
CB F:VAL201 4.6 25.7 1.0
CG F:PHE204 4.7 27.2 1.0
C4N F:NAP1258 4.7 15.1 1.0
O1 F:9W71259 4.7 19.0 1.0
O F:SER197 4.8 23.1 1.0
C F:SER197 4.8 22.1 1.0
OG1 F:THR195 5.0 20.1 1.0
C2N F:NAP1258 5.0 16.1 1.0

Fluorine binding site 7 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 7 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F1260

b:22.8
occ:1.00
F G:9W71260 0.0 22.8 1.0
C13 G:9W71260 1.3 18.9 1.0
C12 G:9W71260 2.3 22.4 1.0
C2 G:9W71260 2.3 20.1 1.0
C1 G:9W71260 2.9 18.1 1.0
O7N G:NAP1259 3.1 23.6 1.0
CE2 G:PHE204 3.3 27.6 1.0
C7N G:NAP1259 3.3 20.7 1.0
CB G:ALA198 3.4 29.9 1.0
CA G:ALA198 3.4 31.0 1.0
CD2 G:PHE204 3.5 28.9 1.0
C G:9W71260 3.5 18.8 1.0
N7N G:NAP1259 3.6 24.0 1.0
C5 G:9W71260 3.6 24.3 1.0
C3 G:9W71260 3.6 25.4 1.0
C4 G:9W71260 4.1 26.1 1.0
C3N G:NAP1259 4.1 21.0 1.0
CG2 G:VAL201 4.2 32.9 1.0
N G:ALA198 4.2 31.2 1.0
O G:ILE193 4.4 14.6 1.0
CZ G:PHE204 4.4 27.7 1.0
C G:ALA198 4.5 33.0 1.0
O G:ALA198 4.5 33.4 1.0
CB G:VAL201 4.7 33.6 1.0
CG G:PHE204 4.7 31.3 1.0
O1 G:9W71260 4.7 29.2 1.0
C4N G:NAP1259 4.7 17.6 1.0
C2N G:NAP1259 4.9 19.2 1.0
C G:SER197 4.9 32.4 1.0
N G:ILE193 4.9 13.7 1.0
OG1 G:THR195 5.0 28.6 1.0

Fluorine binding site 8 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 8 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
H:F1259

b:30.9
occ:1.00
F H:9W71259 0.0 30.9 1.0
C13 H:9W71259 1.3 24.2 1.0
C12 H:9W71259 2.3 24.5 1.0
C2 H:9W71259 2.4 23.7 1.0
C1 H:9W71259 2.9 22.0 1.0
O7N H:NAP1257 3.1 22.4 1.0
CE1 H:PHE204 3.2 25.9 1.0
C H:9W71259 3.3 23.3 1.0
CB H:ALA198 3.3 30.5 1.0
CA H:ALA198 3.4 31.5 1.0
C7N H:NAP1257 3.5 23.2 1.0
C5 H:9W71259 3.6 21.6 1.0
C3 H:9W71259 3.6 21.3 1.0
CD1 H:PHE204 3.6 30.4 1.0
N7N H:NAP1257 3.7 23.7 1.0
CG2 H:VAL201 4.0 31.7 1.0
C4 H:9W71259 4.1 21.9 1.0
CZ H:PHE204 4.3 29.3 1.0
N H:ALA198 4.3 32.3 1.0
C3N H:NAP1257 4.4 20.7 1.0
O H:ILE193 4.4 22.1 1.0
C H:ALA198 4.5 34.8 1.0
O H:ALA198 4.5 34.6 1.0
CB H:VAL201 4.6 34.0 1.0
O1 H:9W71259 4.7 21.4 1.0
CG H:PHE204 4.9 30.6 1.0
C4N H:NAP1257 4.9 17.7 1.0
O H:SER197 4.9 34.8 1.0
C H:SER197 5.0 33.9 1.0

Reference:

J.Schiebel, A.Chang, B.Merget, G.R.Bommineni, W.Yu, L.A.Spagnuolo, M.V.Baxter, M.Tareilus, P.J.Tonge, C.Kisker, C.A.Sotriffer. An Ordered Water Channel in Staphylococcus Aureus Fabi: Unraveling the Mechanism of Substrate Recognition and Reduction. Biochemistry 2015.
ISSN: ESSN 1520-4995
PubMed: 25706582
DOI: 10.1021/BI5014358
Page generated: Thu Aug 1 00:51:31 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy