Atomistry » Fluorine » PDB 4csj-4dbq » 4d43
Atomistry »
  Fluorine »
    PDB 4csj-4dbq »
      4d43 »

Fluorine in PDB 4d43: Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol

Enzymatic activity of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol

All present enzymatic activity of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol:
1.3.1.10;

Protein crystallography data

The structure of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol, PDB code: 4d43 was solved by J.Schiebel, A.Chang, P.J.Tonge, C.A.Sotriffer, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.68 / 2.15
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 89.180, 94.880, 94.900, 98.45, 111.49, 97.30
R / Rfree (%) 17.041 / 23.031

Other elements in 4d43:

The structure of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol (pdb code 4d43). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol, PDB code: 4d43:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 1 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1259

b:19.2
occ:1.00
F A:9W71259 0.0 19.2 1.0
C13 A:9W71259 1.3 15.9 1.0
C12 A:9W71259 2.3 16.8 1.0
C2 A:9W71259 2.4 14.1 1.0
C1 A:9W71259 2.9 12.4 1.0
O7N A:NAP1258 2.9 16.6 1.0
CE1 A:PHE204 3.1 19.2 1.0
CB A:ALA198 3.2 20.3 1.0
C7N A:NAP1258 3.3 17.4 1.0
CA A:ALA198 3.4 20.9 1.0
C A:9W71259 3.4 13.5 1.0
N7N A:NAP1258 3.5 16.6 1.0
C5 A:9W71259 3.6 15.8 1.0
C3 A:9W71259 3.6 13.4 1.0
CD1 A:PHE204 3.6 21.8 1.0
C4 A:9W71259 4.1 16.2 1.0
CZ A:PHE204 4.1 19.9 1.0
CG2 A:VAL201 4.2 21.9 1.0
C3N A:NAP1258 4.2 16.3 1.0
N A:ALA198 4.2 20.3 1.0
O A:ILE193 4.4 13.7 1.0
O A:ALA198 4.4 25.3 1.0
C A:ALA198 4.4 23.9 1.0
CB A:VAL201 4.6 23.6 1.0
O1 A:9W71259 4.8 20.8 1.0
C4N A:NAP1258 4.8 18.9 1.0
CG A:PHE204 4.8 24.6 1.0
C2N A:NAP1258 4.9 15.1 1.0
C A:SER197 5.0 20.8 1.0
N A:ILE193 5.0 14.7 1.0

Fluorine binding site 2 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 2 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1259

b:21.6
occ:1.00
F B:9W71259 0.0 21.6 1.0
C13 B:9W71259 1.3 15.5 1.0
C12 B:9W71259 2.3 16.2 1.0
C2 B:9W71259 2.3 19.1 1.0
C1 B:9W71259 2.8 17.1 1.0
O7N B:NAP1258 3.1 17.8 1.0
CB B:ALA198 3.2 17.8 1.0
CA B:ALA198 3.3 20.0 1.0
C7N B:NAP1258 3.4 17.4 1.0
CE2 B:PHE204 3.4 18.1 1.0
C B:9W71259 3.5 16.2 1.0
CD2 B:PHE204 3.5 19.7 1.0
C5 B:9W71259 3.6 18.9 1.0
C3 B:9W71259 3.6 22.4 1.0
N7N B:NAP1258 3.8 19.2 1.0
C4 B:9W71259 4.1 23.0 1.0
CG2 B:VAL201 4.2 16.1 1.0
C3N B:NAP1258 4.2 13.9 1.0
N B:ALA198 4.2 18.5 1.0
O B:ALA198 4.4 25.3 1.0
O B:ILE193 4.4 19.5 1.0
C B:ALA198 4.4 22.6 1.0
CZ B:PHE204 4.5 16.6 1.0
CB B:VAL201 4.6 17.0 1.0
CG B:PHE204 4.7 24.2 1.0
O1 B:9W71259 4.7 20.9 1.0
O B:SER197 4.8 19.0 1.0
C4N B:NAP1258 4.8 19.2 1.0
C B:SER197 4.8 18.4 1.0
C2N B:NAP1258 4.9 15.5 1.0

Fluorine binding site 3 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 3 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1259

b:22.0
occ:1.00
F C:9W71259 0.0 22.0 1.0
C13 C:9W71259 1.3 15.2 1.0
C12 C:9W71259 2.3 18.4 1.0
C2 C:9W71259 2.3 19.9 1.0
C1 C:9W71259 2.9 12.9 1.0
O7N C:NAP1258 3.1 23.5 1.0
CE1 C:PHE204 3.1 21.9 1.0
CB C:ALA198 3.3 23.3 1.0
CA C:ALA198 3.3 23.8 1.0
C7N C:NAP1258 3.4 20.6 1.0
C C:9W71259 3.4 13.2 1.0
CD1 C:PHE204 3.5 25.7 1.0
C5 C:9W71259 3.6 20.2 1.0
C3 C:9W71259 3.6 20.0 1.0
N7N C:NAP1258 3.7 13.5 1.0
CG2 C:VAL201 4.0 24.7 1.0
C4 C:9W71259 4.1 19.9 1.0
CZ C:PHE204 4.1 22.3 1.0
N C:ALA198 4.2 23.4 1.0
C3N C:NAP1258 4.2 17.5 1.0
O C:ILE193 4.4 18.0 1.0
O C:ALA198 4.4 26.9 1.0
C C:ALA198 4.4 26.2 1.0
CB C:VAL201 4.6 26.3 1.0
CG C:PHE204 4.6 29.0 1.0
O1 C:9W71259 4.8 20.2 1.0
O C:SER197 4.9 25.8 1.0
C C:SER197 4.9 23.9 1.0
C2N C:NAP1258 4.9 18.6 1.0
C4N C:NAP1258 4.9 21.1 1.0

Fluorine binding site 4 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 4 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1258

b:24.7
occ:1.00
F D:9W71258 0.0 24.7 1.0
C13 D:9W71258 1.3 17.3 1.0
C12 D:9W71258 2.3 21.3 1.0
C2 D:9W71258 2.3 16.5 1.0
C1 D:9W71258 2.9 15.3 1.0
CE1 D:PHE204 3.1 16.4 1.0
O7N D:NAP1257 3.2 21.0 1.0
CB D:ALA198 3.3 21.2 1.0
CA D:ALA198 3.4 22.9 1.0
C D:9W71258 3.4 16.2 1.0
C7N D:NAP1257 3.5 21.1 1.0
CD1 D:PHE204 3.5 19.0 1.0
C5 D:9W71258 3.6 20.3 1.0
C3 D:9W71258 3.6 16.5 1.0
N7N D:NAP1257 3.7 19.6 1.0
C4 D:9W71258 4.1 16.9 1.0
CZ D:PHE204 4.2 20.0 1.0
N D:ALA198 4.2 22.9 1.0
CG2 D:VAL201 4.2 25.0 1.0
O D:ILE193 4.3 15.8 1.0
C3N D:NAP1257 4.4 20.9 1.0
C D:ALA198 4.6 25.9 1.0
CB D:VAL201 4.6 25.8 1.0
O D:ALA198 4.6 26.9 1.0
O1 D:9W71258 4.7 20.2 1.0
CG D:PHE204 4.8 27.0 1.0
C D:SER197 4.9 23.1 1.0
O D:SER197 5.0 21.3 1.0
N D:ILE193 5.0 15.4 1.0
C4N D:NAP1257 5.0 18.9 1.0

Fluorine binding site 5 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 5 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F1259

b:19.9
occ:1.00
F E:9W71259 0.0 19.9 1.0
C13 E:9W71259 1.3 19.4 1.0
C12 E:9W71259 2.3 17.2 1.0
C2 E:9W71259 2.3 15.7 1.0
C1 E:9W71259 2.9 16.5 1.0
O7N E:NAP1258 2.9 23.3 1.0
CE1 E:PHE204 3.1 17.3 1.0
CB E:ALA198 3.3 20.6 1.0
C7N E:NAP1258 3.4 16.2 1.0
CA E:ALA198 3.4 21.8 1.0
C E:9W71259 3.4 16.7 1.0
CD1 E:PHE204 3.5 18.8 1.0
C5 E:9W71259 3.6 19.2 1.0
C3 E:9W71259 3.6 15.1 1.0
N7N E:NAP1258 3.6 14.7 1.0
C4 E:9W71259 4.1 18.8 1.0
CZ E:PHE204 4.2 20.3 1.0
N E:ALA198 4.2 20.6 1.0
C3N E:NAP1258 4.3 17.6 1.0
CG2 E:VAL201 4.3 21.5 1.0
O E:ALA198 4.4 26.9 1.0
C E:ALA198 4.5 24.3 1.0
O E:ILE193 4.5 14.6 1.0
CB E:VAL201 4.7 22.6 1.0
CG E:PHE204 4.7 20.7 1.0
O1 E:9W71259 4.7 21.5 1.0
C4N E:NAP1258 4.9 13.5 1.0
O E:SER197 4.9 20.9 1.0
C E:SER197 4.9 22.4 1.0
C2N E:NAP1258 5.0 18.9 1.0

Fluorine binding site 6 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 6 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F1259

b:23.9
occ:1.00
F F:9W71259 0.0 23.9 1.0
C13 F:9W71259 1.3 18.1 1.0
C12 F:9W71259 2.3 17.8 1.0
C2 F:9W71259 2.3 17.9 1.0
C1 F:9W71259 2.9 14.2 1.0
O7N F:NAP1258 3.1 19.7 1.0
CB F:ALA198 3.2 21.7 1.0
CE2 F:PHE204 3.3 21.0 1.0
CA F:ALA198 3.3 22.4 1.0
C7N F:NAP1258 3.4 19.0 1.0
CD2 F:PHE204 3.5 25.1 1.0
C F:9W71259 3.5 13.0 1.0
C5 F:9W71259 3.6 17.2 1.0
C3 F:9W71259 3.6 23.6 1.0
N7N F:NAP1258 3.7 16.1 1.0
CG2 F:VAL201 4.0 24.9 1.0
C4 F:9W71259 4.1 24.2 1.0
N F:ALA198 4.2 21.7 1.0
C3N F:NAP1258 4.2 17.9 1.0
CZ F:PHE204 4.4 21.7 1.0
O F:ILE193 4.4 17.1 1.0
C F:ALA198 4.4 24.6 1.0
O F:ALA198 4.4 26.0 1.0
CB F:VAL201 4.6 25.7 1.0
CG F:PHE204 4.7 27.2 1.0
C4N F:NAP1258 4.7 15.1 1.0
O1 F:9W71259 4.7 19.0 1.0
O F:SER197 4.8 23.1 1.0
C F:SER197 4.8 22.1 1.0
OG1 F:THR195 5.0 20.1 1.0
C2N F:NAP1258 5.0 16.1 1.0

Fluorine binding site 7 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 7 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F1260

b:22.8
occ:1.00
F G:9W71260 0.0 22.8 1.0
C13 G:9W71260 1.3 18.9 1.0
C12 G:9W71260 2.3 22.4 1.0
C2 G:9W71260 2.3 20.1 1.0
C1 G:9W71260 2.9 18.1 1.0
O7N G:NAP1259 3.1 23.6 1.0
CE2 G:PHE204 3.3 27.6 1.0
C7N G:NAP1259 3.3 20.7 1.0
CB G:ALA198 3.4 29.9 1.0
CA G:ALA198 3.4 31.0 1.0
CD2 G:PHE204 3.5 28.9 1.0
C G:9W71260 3.5 18.8 1.0
N7N G:NAP1259 3.6 24.0 1.0
C5 G:9W71260 3.6 24.3 1.0
C3 G:9W71260 3.6 25.4 1.0
C4 G:9W71260 4.1 26.1 1.0
C3N G:NAP1259 4.1 21.0 1.0
CG2 G:VAL201 4.2 32.9 1.0
N G:ALA198 4.2 31.2 1.0
O G:ILE193 4.4 14.6 1.0
CZ G:PHE204 4.4 27.7 1.0
C G:ALA198 4.5 33.0 1.0
O G:ALA198 4.5 33.4 1.0
CB G:VAL201 4.7 33.6 1.0
CG G:PHE204 4.7 31.3 1.0
O1 G:9W71260 4.7 29.2 1.0
C4N G:NAP1259 4.7 17.6 1.0
C2N G:NAP1259 4.9 19.2 1.0
C G:SER197 4.9 32.4 1.0
N G:ILE193 4.9 13.7 1.0
OG1 G:THR195 5.0 28.6 1.0

Fluorine binding site 8 out of 8 in 4d43

Go back to Fluorine Binding Sites List in 4d43
Fluorine binding site 8 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 2-(2-Chloro-4-Nitrophenoxy)-5-Ethyl-4-Fluorophenol within 5.0Å range:
probe atom residue distance (Å) B Occ
H:F1259

b:30.9
occ:1.00
F H:9W71259 0.0 30.9 1.0
C13 H:9W71259 1.3 24.2 1.0
C12 H:9W71259 2.3 24.5 1.0
C2 H:9W71259 2.4 23.7 1.0
C1 H:9W71259 2.9 22.0 1.0
O7N H:NAP1257 3.1 22.4 1.0
CE1 H:PHE204 3.2 25.9 1.0
C H:9W71259 3.3 23.3 1.0
CB H:ALA198 3.3 30.5 1.0
CA H:ALA198 3.4 31.5 1.0
C7N H:NAP1257 3.5 23.2 1.0
C5 H:9W71259 3.6 21.6 1.0
C3 H:9W71259 3.6 21.3 1.0
CD1 H:PHE204 3.6 30.4 1.0
N7N H:NAP1257 3.7 23.7 1.0
CG2 H:VAL201 4.0 31.7 1.0
C4 H:9W71259 4.1 21.9 1.0
CZ H:PHE204 4.3 29.3 1.0
N H:ALA198 4.3 32.3 1.0
C3N H:NAP1257 4.4 20.7 1.0
O H:ILE193 4.4 22.1 1.0
C H:ALA198 4.5 34.8 1.0
O H:ALA198 4.5 34.6 1.0
CB H:VAL201 4.6 34.0 1.0
O1 H:9W71259 4.7 21.4 1.0
CG H:PHE204 4.9 30.6 1.0
C4N H:NAP1257 4.9 17.7 1.0
O H:SER197 4.9 34.8 1.0
C H:SER197 5.0 33.9 1.0

Reference:

J.Schiebel, A.Chang, B.Merget, G.R.Bommineni, W.Yu, L.A.Spagnuolo, M.V.Baxter, M.Tareilus, P.J.Tonge, C.Kisker, C.A.Sotriffer. An Ordered Water Channel in Staphylococcus Aureus Fabi: Unraveling the Mechanism of Substrate Recognition and Reduction. Biochemistry 2015.
ISSN: ESSN 1520-4995
PubMed: 25706582
DOI: 10.1021/BI5014358
Page generated: Sun Dec 13 12:01:01 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy