Atomistry » Fluorine » PDB 4e3n-4f9m » 4e7p
Atomistry »
  Fluorine »
    PDB 4e3n-4f9m »
      4e7p »

Fluorine in PDB 4e7p: Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride

Protein crystallography data

The structure of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride, PDB code: 4e7p was solved by A.K.Park, J.H.Moon, K.S.Lee, Y.M.Chi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.65 / 1.89
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.837, 83.984, 49.511, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 22.6

Other elements in 4e7p:

The structure of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride (pdb code 4e7p). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride, PDB code: 4e7p:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 4e7p

Go back to Fluorine Binding Sites List in 4e7p
Fluorine binding site 1 out of 6 in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:12.9
occ:1.00
 F1 A:BEF202 0.0 12.9 1.0
BE A:BEF202 1.4 14.9 1.0
F2 A:BEF202 2.3 13.1 1.0
F3 A:BEF202 2.3 12.8 1.0
OD2 A:ASP53 2.4 11.8 1.0
OG1 A:THR81 2.7 15.6 1.0
N A:GLU55 2.9 11.2 1.0
N A:VAL54 3.0 12.0 1.0
CB A:VAL54 3.3 11.1 1.0
CA A:VAL54 3.5 11.4 1.0
CG A:ASP53 3.5 13.0 1.0
CD2 A:PHE83 3.5 23.2 1.0
CB A:THR81 3.5 19.5 1.0
CE2 A:PHE83 3.6 20.2 1.0
C A:VAL54 3.7 12.5 1.0
CA A:THR81 3.9 16.4 1.0
CA A:GLU55 4.0 13.7 1.0
CB A:GLU55 4.0 14.9 1.0
OD1 A:ASP53 4.1 11.7 1.0
C A:ASP53 4.1 12.7 1.0
CG2 A:VAL54 4.2 10.9 1.0
N A:THR82 4.2 16.9 1.0
CG A:GLU55 4.3 14.9 1.0
O A:VAL80 4.4 19.9 1.0
MG A:MG201 4.4 4.2 1.0
CA A:ASP53 4.4 11.6 1.0
CG1 A:VAL54 4.4 14.9 1.0
CB A:ASP53 4.5 11.0 1.0
O A:GLU55 4.6 14.0 1.0
C A:THR81 4.6 19.2 1.0
O A:HOH317 4.6 22.1 1.0
C A:GLU55 4.7 13.6 1.0
NZ A:LYS103 4.8 13.3 1.0
CG A:PHE83 4.8 23.4 1.0
O A:VAL54 4.8 13.8 1.0
CZ A:PHE83 4.9 24.0 1.0
CG2 A:THR81 4.9 19.0 1.0

Fluorine binding site 2 out of 6 in 4e7p

Go back to Fluorine Binding Sites List in 4e7p
Fluorine binding site 2 out of 6 in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:13.1
occ:1.00
 F2 A:BEF202 0.0 13.1 1.0
BE A:BEF202 1.4 14.9 1.0
F1 A:BEF202 2.3 12.9 1.0
F3 A:BEF202 2.3 12.8 1.0
OD2 A:ASP53 2.5 11.8 1.0
NZ A:LYS103 2.8 13.3 1.0
N A:THR82 3.0 16.9 1.0
O A:HOH317 3.0 22.1 1.0
CE A:LYS103 3.4 15.8 1.0
CA A:THR81 3.4 16.4 1.0
OG1 A:THR81 3.5 15.6 1.0
OG1 A:THR82 3.5 21.8 1.0
CG A:ASP53 3.6 13.0 1.0
C A:THR81 3.7 19.2 1.0
CE2 A:PHE83 3.9 20.2 1.0
CD A:LYS103 3.9 14.3 1.0
CB A:THR82 3.9 21.9 1.0
O A:HOH301 3.9 12.7 1.0
CB A:THR81 4.0 19.5 1.0
CA A:THR82 4.0 20.0 1.0
OD1 A:ASP53 4.1 11.7 1.0
CD2 A:PHE83 4.1 23.2 1.0
O A:VAL80 4.2 19.9 1.0
MG A:MG201 4.2 4.2 1.0
O A:HOH302 4.6 20.0 1.0
N A:THR81 4.6 16.3 1.0
N A:VAL54 4.7 12.0 1.0
CB A:ASP53 4.8 11.0 1.0
C A:VAL80 4.8 17.2 1.0
N A:PHE83 4.8 21.2 1.0
CZ A:PHE83 4.9 24.0 1.0
O A:THR81 4.9 15.0 1.0
OE1 A:GLU7 4.9 11.9 1.0
N A:GLU55 4.9 11.2 1.0
CG A:LYS103 4.9 16.3 1.0

Fluorine binding site 3 out of 6 in 4e7p

Go back to Fluorine Binding Sites List in 4e7p
Fluorine binding site 3 out of 6 in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:12.8
occ:1.00
 F3 A:BEF202 0.0 12.8 1.0
BE A:BEF202 1.4 14.9 1.0
F1 A:BEF202 2.3 12.9 1.0
F2 A:BEF202 2.3 13.1 1.0
MG A:MG201 2.3 4.2 1.0
OD2 A:ASP53 2.5 11.8 1.0
OD1 A:ASP53 2.9 11.7 1.0
CG A:ASP53 3.1 13.0 1.0
O A:GLU55 3.2 14.0 1.0
O A:HOH317 3.2 22.1 1.0
O A:HOH301 3.3 12.7 1.0
CE2 A:PHE83 3.4 20.2 1.0
N A:GLU55 3.5 11.2 1.0
O A:HOH392 3.5 26.9 1.0
CB A:GLU55 3.6 14.9 1.0
CA A:GLU55 3.8 13.7 1.0
C A:GLU55 3.9 13.6 1.0
NZ A:LYS103 4.1 13.3 1.0
CD2 A:PHE83 4.2 23.2 1.0
CZ A:PHE83 4.4 24.0 1.0
CG A:GLU55 4.5 14.9 1.0
N A:VAL54 4.5 12.0 1.0
CB A:ASP53 4.6 11.0 1.0
C A:VAL54 4.6 12.5 1.0
OD1 A:ASP8 4.6 15.1 1.0
OG1 A:THR81 4.7 15.6 1.0
O A:HOH358 4.9 32.8 1.0

Fluorine binding site 4 out of 6 in 4e7p

Go back to Fluorine Binding Sites List in 4e7p
Fluorine binding site 4 out of 6 in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F202

b:13.6
occ:1.00
 F1 B:BEF202 0.0 13.6 1.0
BE B:BEF202 1.4 16.8 1.0
F2 B:BEF202 2.3 13.1 1.0
F3 B:BEF202 2.3 13.4 1.0
OD2 B:ASP53 2.4 12.8 1.0
O B:HOH306 2.8 26.5 1.0
NZ B:LYS103 2.9 14.1 1.0
N B:THR82 3.1 16.2 1.0
CA B:THR81 3.4 15.1 1.0
OG1 B:THR81 3.5 14.5 1.0
CG B:ASP53 3.5 16.5 1.0
CE B:LYS103 3.5 13.4 1.0
C B:THR81 3.7 17.6 1.0
CG2 B:THR82 3.7 18.1 1.0
CD B:LYS103 3.9 15.6 1.0
CB B:THR81 3.9 15.7 1.0
OD1 B:ASP53 4.0 13.5 1.0
O B:HOH303 4.0 17.2 1.0
CE2 B:PHE83 4.0 28.1 1.0
OG1 B:THR82 4.1 27.4 1.0
O B:VAL80 4.2 20.5 1.0
CA B:THR82 4.2 18.9 1.0
CD2 B:PHE83 4.2 23.4 1.0
CB B:THR82 4.2 23.1 1.0
MG B:MG201 4.3 6.5 1.0
O B:HOH319 4.4 21.2 1.0
N B:THR81 4.5 15.8 1.0
O B:HOH382 4.6 24.9 1.0
N B:VAL54 4.7 12.0 1.0
CB B:ASP53 4.7 13.8 1.0
C B:VAL80 4.8 20.0 1.0
O B:THR81 4.9 14.5 1.0
OE1 B:GLU7 4.9 11.5 1.0
N B:GLU55 4.9 14.2 1.0
N B:PHE83 5.0 20.5 1.0
CZ B:PHE83 5.0 31.5 1.0
CG B:LYS103 5.0 16.5 1.0

Fluorine binding site 5 out of 6 in 4e7p

Go back to Fluorine Binding Sites List in 4e7p
Fluorine binding site 5 out of 6 in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F202

b:13.1
occ:1.00
 F2 B:BEF202 0.0 13.1 1.0
BE B:BEF202 1.4 16.8 1.0
F1 B:BEF202 2.3 13.6 1.0
F3 B:BEF202 2.3 13.4 1.0
MG B:MG201 2.4 6.5 1.0
OD2 B:ASP53 2.5 12.8 1.0
OD1 B:ASP53 2.9 13.5 1.0
CG B:ASP53 3.0 16.5 1.0
O B:HOH306 3.1 26.5 1.0
O B:HOH382 3.1 24.9 1.0
O B:GLU55 3.2 18.1 1.0
O B:HOH303 3.4 17.2 1.0
N B:GLU55 3.5 14.2 1.0
CE2 B:PHE83 3.5 28.1 1.0
CB B:GLU55 3.6 21.2 1.0
CA B:GLU55 3.8 16.6 1.0
C B:GLU55 3.9 15.9 1.0
CD2 B:PHE83 4.2 23.4 1.0
NZ B:LYS103 4.2 14.1 1.0
CZ B:PHE83 4.4 31.5 1.0
O B:HOH419 4.5 29.9 1.0
N B:VAL54 4.5 12.0 1.0
CG B:GLU55 4.5 20.9 1.0
C B:VAL54 4.5 15.7 1.0
OD1 B:ASP8 4.5 14.1 1.0
CB B:ASP53 4.5 13.8 1.0
OG1 B:THR81 4.6 14.5 1.0
O B:HOH406 4.6 35.5 1.0
CA B:VAL54 5.0 12.8 1.0

Fluorine binding site 6 out of 6 in 4e7p

Go back to Fluorine Binding Sites List in 4e7p
Fluorine binding site 6 out of 6 in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F202

b:13.4
occ:1.00
 F3 B:BEF202 0.0 13.4 1.0
BE B:BEF202 1.4 16.8 1.0
F2 B:BEF202 2.3 13.1 1.0
F1 B:BEF202 2.3 13.6 1.0
OD2 B:ASP53 2.5 12.8 1.0
OG1 B:THR81 2.6 14.5 1.0
N B:GLU55 2.9 14.2 1.0
N B:VAL54 3.0 12.0 1.0
CB B:VAL54 3.3 14.6 1.0
CB B:THR81 3.4 15.7 1.0
CA B:VAL54 3.4 12.8 1.0
CG B:ASP53 3.4 16.5 1.0
CD2 B:PHE83 3.5 23.4 1.0
CE2 B:PHE83 3.6 28.1 1.0
C B:VAL54 3.6 15.7 1.0
CA B:THR81 3.8 15.1 1.0
CA B:GLU55 4.0 16.6 1.0
OD1 B:ASP53 4.0 13.5 1.0
CB B:GLU55 4.0 21.2 1.0
C B:ASP53 4.1 12.7 1.0
CG2 B:VAL54 4.1 13.1 1.0
N B:THR82 4.3 16.2 1.0
CG B:GLU55 4.3 20.9 1.0
O B:VAL80 4.3 20.5 1.0
O B:HOH306 4.4 26.5 1.0
CG1 B:VAL54 4.5 17.2 1.0
CA B:ASP53 4.5 11.8 1.0
MG B:MG201 4.5 6.5 1.0
CB B:ASP53 4.6 13.8 1.0
C B:THR81 4.6 17.6 1.0
O B:GLU55 4.6 18.1 1.0
C B:GLU55 4.7 15.9 1.0
CG B:PHE83 4.8 27.2 1.0
CG2 B:THR81 4.8 17.7 1.0
O B:VAL54 4.8 16.3 1.0
CZ B:PHE83 4.9 31.5 1.0
NZ B:LYS103 4.9 14.1 1.0
N B:THR81 5.0 15.8 1.0

Reference:

A.K.Park, J.H.Moon, K.S.Lee, Y.M.Chi. Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Absence and Presence of the Phosphoryl Analog Beryllofluoride. Biochem.Biophys.Res.Commun. V. 421 403 2012.
ISSN: ISSN 0006-291X
PubMed: 22521891
DOI: 10.1016/J.BBRC.2012.04.035
Page generated: Thu Aug 1 01:16:34 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy