Atomistry » Fluorine » PDB 4e3n-4f9m » 4ead
Atomistry »
  Fluorine »
    PDB 4e3n-4f9m »
      4ead »

Fluorine in PDB 4ead: Thymidine Phosphorylase From E.Coli with 3'-Azido-2'-Fluoro- Dideoxyuridine

Enzymatic activity of Thymidine Phosphorylase From E.Coli with 3'-Azido-2'-Fluoro- Dideoxyuridine

All present enzymatic activity of Thymidine Phosphorylase From E.Coli with 3'-Azido-2'-Fluoro- Dideoxyuridine:
2.4.2.4;

Protein crystallography data

The structure of Thymidine Phosphorylase From E.Coli with 3'-Azido-2'-Fluoro- Dideoxyuridine, PDB code: 4ead was solved by V.I.Timofeev, Y.A.Abramchik, R.S.Esipov, I.P.Kuranova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.00 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 129.862, 129.862, 67.656, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 19.2

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Thymidine Phosphorylase From E.Coli with 3'-Azido-2'-Fluoro- Dideoxyuridine (pdb code 4ead). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Thymidine Phosphorylase From E.Coli with 3'-Azido-2'-Fluoro- Dideoxyuridine, PDB code: 4ead:

Fluorine binding site 1 out of 1 in 4ead

Go back to Fluorine Binding Sites List in 4ead
Fluorine binding site 1 out of 1 in the Thymidine Phosphorylase From E.Coli with 3'-Azido-2'-Fluoro- Dideoxyuridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Thymidine Phosphorylase From E.Coli with 3'-Azido-2'-Fluoro- Dideoxyuridine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:35.6
occ:1.00
F2' A:0NP501 0.0 35.6 1.0
C2' A:0NP501 1.4 29.5 1.0
C3' A:0NP501 2.4 34.1 1.0
C1' A:0NP501 2.4 23.7 1.0
N3' A:0NP501 2.5 43.1 1.0
N18 A:0NP501 2.8 42.1 1.0
N1 A:0NP501 3.2 22.0 1.0
O A:HOH909 3.4 36.9 1.0
O4' A:0NP501 3.5 23.7 1.0
N19 A:0NP501 3.5 31.2 1.0
C4' A:0NP501 3.5 29.4 1.0
CG2 A:ILE183 3.5 18.0 1.0
CD1 A:ILE187 3.7 21.9 1.0
C6 A:0NP501 3.8 24.9 1.0
O A:HOH689 3.9 33.9 1.0
C2 A:0NP501 4.0 19.7 1.0
O2 A:0NP501 4.1 20.8 1.0
CG1 A:ILE187 4.2 21.6 1.0
O5' A:0NP501 4.4 34.2 1.0
CG2 A:THR87 4.6 17.8 1.0
O A:THR87 4.6 21.3 1.0
C5' A:0NP501 4.6 31.9 1.0
CB A:THR87 4.6 18.5 1.0
CA A:THR87 4.7 15.7 1.0
CB A:ILE183 4.7 16.2 1.0
CG1 A:ILE183 4.8 16.6 1.0
C5 A:0NP501 4.9 25.9 1.0

Reference:

V.I.Timofeev, Y.A.Abramchik, R.S.Esipov, I.P.Kuranova. Thymidine Phosphorylase From E.Coli with 3'-Azido-2'-Fluoro-Dideoxyuridine To Be Published.
Page generated: Thu Aug 1 01:16:34 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy