Fluorine in PDB 4f9m: Crystal Structure of the Ppargamma-Lbd Complexed with A Cercosporamide Derivative Modulator

The structure of Crystal Structure of the Ppargamma-Lbd Complexed with A Cercosporamide Derivative Modulator, PDB code: 4f9m was solved by Y.Matsui, H.Hanzawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.37 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	38.693, 54.167, 66.218, 90.00, 91.38, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Fluorine atom in the Crystal Structure of the Ppargamma-Lbd Complexed with A Cercosporamide Derivative Modulator (pdb code 4f9m). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of the Ppargamma-Lbd Complexed with A Cercosporamide Derivative Modulator, PDB code: 4f9m:

Fluorine binding site 1 out of 1 in the Crystal Structure of the Ppargamma-Lbd Complexed with A Cercosporamide Derivative Modulator


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Ppargamma-Lbd Complexed with A Cercosporamide Derivative Modulator within 5.0Å range: probe atom residue distance (Å) B Occ A:F501 b:34.6 occ:1.00 F38 A:FCM501 0.0 34.6 1.0 C28 A:FCM501 1.3 32.4 1.0 C27 A:FCM501 2.3 32.0 1.0 C29 A:FCM501 2.4 32.0 1.0 C31 A:FCM501 2.8 31.0 1.0 CE A:LYS367 3.0 34.8 1.0 C26 A:FCM501 3.6 30.3 1.0 CG A:LYS367 3.7 32.3 1.0 CD A:LYS367 3.7 31.9 1.0 C30 A:FCM501 3.7 30.6 1.0 NZ A:LYS367 3.9 33.8 1.0 CZ A:PHE363 3.9 39.9 1.0 CE2 A:PHE363 3.9 39.6 1.0 C25 A:FCM501 4.2 30.1 1.0 C32 A:FCM501 4.2 32.3 1.0 O A:PHE363 4.5 38.4 1.0 CD2 A:LEU330 4.6 32.2 1.0 CE1 A:PHE363 4.7 40.8 1.0 CE1 A:HIS449 4.7 42.4 1.0 CD2 A:PHE363 4.7 40.0 1.0 C37 A:FCM501 4.8 30.3 1.0 C34 A:FCM501 4.8 31.3 1.0 CB A:LYS367 4.9 32.5 1.0 SG A:CYS285 5.0 33.6 1.0

A.Furukawa, T.Arita, T.Fukuzaki, M.Mori, T.Honda, S.Satoh, Y.Matsui, K.Wakabayashi, S.Hayashi, K.Nakamura, K.Araki, M.Kuroha, J.Tanaka, S.Wakimoto, O.Suzuki, J.Ohsumi. Synthesis and Biological Evaluation of Novel (-)-Cercosporamide Derivatives As Potent Selective Pparg Modulators Eur.J.Med.Chem. V. 54 522 2012.
ISSN: ISSN 0223-5234
PubMed: 22727448
DOI: 10.1016/J.EJMECH.2012.05.040