Fluorine in PDB 4fmb: Vira-RAB1 Complex Structure
Protein crystallography data
The structure of Vira-RAB1 Complex Structure, PDB code: 4fmb
was solved by
F.Shao,
Y.Zhu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
50.00 /
3.20
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
186.118,
127.311,
107.325,
90.00,
94.45,
90.00
|
|
R / Rfree (%)
|
22.8 /
24.7
|
Other elements in 4fmb:
The structure of Vira-RAB1 Complex Structure also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Vira-RAB1 Complex Structure
(pdb code 4fmb). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 9 binding sites of Fluorine where determined in the
Vira-RAB1 Complex Structure, PDB code: 4fmb:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Fluorine binding site 1 out
of 9 in 4fmb
Go back to
Fluorine Binding Sites List in 4fmb
Fluorine binding site 1 out
of 9 in the Vira-RAB1 Complex Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Vira-RAB1 Complex Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F201
b:73.0
occ:1.00
|
F1
|
B:AF3201
|
0.0
|
73.0
|
1.0
|
|
AL
|
B:AF3201
|
1.7
|
73.0
|
1.0
|
|
O1B
|
B:GDP202
|
2.5
|
73.0
|
1.0
|
|
O2B
|
B:GDP202
|
2.6
|
73.0
|
1.0
|
|
O
|
B:HOH301
|
2.7
|
73.0
|
1.0
|
|
NZ
|
B:LYS24
|
2.7
|
85.2
|
1.0
|
|
PB
|
B:GDP202
|
2.8
|
73.0
|
1.0
|
|
F2
|
B:AF3201
|
2.9
|
73.0
|
1.0
|
|
F3
|
B:AF3201
|
2.9
|
73.0
|
1.0
|
|
CE
|
B:LYS24
|
3.0
|
88.0
|
1.0
|
|
O3B
|
B:GDP202
|
3.2
|
73.0
|
1.0
|
|
N
|
B:GLY69
|
3.4
|
0.4
|
1.0
|
|
O
|
B:THR67
|
3.5
|
0.7
|
1.0
|
|
O
|
B:HOH302
|
3.6
|
49.0
|
1.0
|
|
MG
|
B:MG203
|
3.8
|
0.2
|
1.0
|
|
CA
|
B:SER20
|
4.0
|
0.9
|
1.0
|
|
N
|
B:GLY21
|
4.0
|
97.4
|
1.0
|
|
CA
|
B:GLY69
|
4.1
|
0.4
|
1.0
|
|
C
|
B:ALA68
|
4.2
|
0.1
|
1.0
|
|
CA
|
B:ALA68
|
4.3
|
0.1
|
1.0
|
|
O3A
|
B:GDP202
|
4.3
|
73.0
|
1.0
|
|
O
|
B:ASP19
|
4.3
|
0.6
|
1.0
|
|
CD
|
B:LYS24
|
4.5
|
89.3
|
1.0
|
|
C
|
B:THR67
|
4.6
|
0.5
|
1.0
|
|
C
|
B:SER20
|
4.6
|
0.3
|
1.0
|
|
CB
|
B:SER20
|
4.6
|
0.3
|
1.0
|
|
N
|
B:SER20
|
4.8
|
0.8
|
1.0
|
|
O
|
B:HOH303
|
4.8
|
37.2
|
1.0
|
|
CG
|
B:LYS24
|
4.9
|
87.3
|
1.0
|
|
C
|
B:ASP19
|
4.9
|
0.6
|
1.0
|
|
CB
|
B:LYS24
|
4.9
|
89.1
|
1.0
|
|
NH1
|
A:ARG188
|
4.9
|
1.0
|
1.0
|
|
N
|
B:ALA68
|
4.9
|
1.0
|
1.0
|
|
Fluorine binding site 2 out
of 9 in 4fmb
Go back to
Fluorine Binding Sites List in 4fmb
Fluorine binding site 2 out
of 9 in the Vira-RAB1 Complex Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Vira-RAB1 Complex Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F201
b:73.0
occ:1.00
|
F2
|
B:AF3201
|
0.0
|
73.0
|
1.0
|
|
AL
|
B:AF3201
|
1.7
|
73.0
|
1.0
|
|
MG
|
B:MG203
|
2.5
|
0.2
|
1.0
|
|
O1B
|
B:GDP202
|
2.6
|
73.0
|
1.0
|
|
N
|
B:THR43
|
2.6
|
0.1
|
1.0
|
|
CB
|
B:THR43
|
2.7
|
0.0
|
1.0
|
|
O
|
B:HOH301
|
2.8
|
73.0
|
1.0
|
|
F1
|
B:AF3201
|
2.9
|
73.0
|
1.0
|
|
F3
|
B:AF3201
|
3.0
|
73.0
|
1.0
|
|
O
|
B:HOH303
|
3.0
|
37.2
|
1.0
|
|
CA
|
B:THR43
|
3.1
|
0.0
|
1.0
|
|
OG1
|
B:THR43
|
3.2
|
0.7
|
1.0
|
|
O
|
B:HOH302
|
3.3
|
49.0
|
1.0
|
|
O3B
|
B:GDP202
|
3.5
|
73.0
|
1.0
|
|
O
|
B:THR43
|
3.6
|
0.8
|
1.0
|
|
C
|
B:SER42
|
3.7
|
0.4
|
1.0
|
|
PB
|
B:GDP202
|
3.7
|
73.0
|
1.0
|
|
NH1
|
A:ARG188
|
3.8
|
1.0
|
1.0
|
|
C
|
B:THR43
|
3.8
|
0.9
|
1.0
|
|
CA
|
B:SER42
|
4.0
|
0.8
|
1.0
|
|
CG2
|
B:THR43
|
4.0
|
0.5
|
1.0
|
|
O
|
B:THR67
|
4.3
|
0.7
|
1.0
|
|
CB
|
B:SER42
|
4.5
|
0.8
|
1.0
|
|
O2B
|
B:GDP202
|
4.6
|
73.0
|
1.0
|
|
OG
|
B:SER25
|
4.7
|
89.1
|
1.0
|
|
O
|
B:SER42
|
4.7
|
0.0
|
1.0
|
|
CZ
|
A:ARG188
|
4.7
|
0.5
|
1.0
|
|
NE2
|
A:GLN280
|
4.8
|
0.4
|
1.0
|
|
NH2
|
A:ARG188
|
4.8
|
0.5
|
1.0
|
|
CA
|
B:ALA68
|
4.8
|
0.1
|
1.0
|
|
O3A
|
B:GDP202
|
4.9
|
73.0
|
1.0
|
|
Fluorine binding site 3 out
of 9 in 4fmb
Go back to
Fluorine Binding Sites List in 4fmb
Fluorine binding site 3 out
of 9 in the Vira-RAB1 Complex Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Vira-RAB1 Complex Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F201
b:73.0
occ:1.00
|
F3
|
B:AF3201
|
0.0
|
73.0
|
1.0
|
|
AL
|
B:AF3201
|
1.7
|
73.0
|
1.0
|
|
O
|
B:HOH301
|
2.5
|
73.0
|
1.0
|
|
O1B
|
B:GDP202
|
2.6
|
73.0
|
1.0
|
|
NH2
|
A:ARG188
|
2.8
|
0.5
|
1.0
|
|
F1
|
B:AF3201
|
2.9
|
73.0
|
1.0
|
|
F2
|
B:AF3201
|
3.0
|
73.0
|
1.0
|
|
NE2
|
A:GLN280
|
3.1
|
0.4
|
1.0
|
|
NH1
|
A:ARG188
|
3.3
|
1.0
|
1.0
|
|
CB
|
B:SER20
|
3.5
|
0.3
|
1.0
|
|
CZ
|
A:ARG188
|
3.5
|
0.5
|
1.0
|
|
N
|
B:GLY21
|
3.6
|
97.4
|
1.0
|
|
CA
|
B:SER20
|
3.7
|
0.9
|
1.0
|
|
OE1
|
A:GLN280
|
3.9
|
0.7
|
1.0
|
|
CD
|
A:GLN280
|
4.0
|
0.4
|
1.0
|
|
PB
|
B:GDP202
|
4.0
|
73.0
|
1.0
|
|
C
|
B:SER20
|
4.0
|
0.3
|
1.0
|
|
O2B
|
B:GDP202
|
4.2
|
73.0
|
1.0
|
|
CB
|
B:SER42
|
4.5
|
0.8
|
1.0
|
|
N
|
B:THR43
|
4.5
|
0.1
|
1.0
|
|
CA
|
B:GLY21
|
4.5
|
97.3
|
1.0
|
|
N
|
B:GLY69
|
4.5
|
0.4
|
1.0
|
|
OD1
|
A:ASP185
|
4.8
|
93.0
|
1.0
|
|
CA
|
B:SER42
|
4.8
|
0.8
|
1.0
|
|
NE
|
A:ARG188
|
4.8
|
0.3
|
1.0
|
|
OG
|
B:SER20
|
4.9
|
0.1
|
1.0
|
|
O3B
|
B:GDP202
|
4.9
|
73.0
|
1.0
|
|
O3A
|
B:GDP202
|
4.9
|
73.0
|
1.0
|
|
Fluorine binding site 4 out
of 9 in 4fmb
Go back to
Fluorine Binding Sites List in 4fmb
Fluorine binding site 4 out
of 9 in the Vira-RAB1 Complex Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Vira-RAB1 Complex Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F201
b:89.9
occ:1.00
|
F1
|
D:AF3201
|
0.0
|
89.9
|
1.0
|
|
AL
|
D:AF3201
|
1.7
|
89.9
|
1.0
|
|
O
|
C:HOH501
|
2.7
|
89.9
|
1.0
|
|
O1B
|
D:GDP202
|
2.7
|
89.9
|
1.0
|
|
F2
|
D:AF3201
|
2.8
|
89.9
|
1.0
|
|
F3
|
D:AF3201
|
3.0
|
89.9
|
1.0
|
|
NZ
|
D:LYS24
|
3.0
|
86.8
|
1.0
|
|
O2B
|
D:GDP202
|
3.1
|
89.9
|
1.0
|
|
PB
|
D:GDP202
|
3.1
|
89.9
|
1.0
|
|
CE
|
D:LYS24
|
3.2
|
89.6
|
1.0
|
|
N
|
D:GLY69
|
3.2
|
0.6
|
1.0
|
|
O
|
D:THR67
|
3.3
|
0.8
|
1.0
|
|
O
|
D:HOH301
|
3.5
|
49.0
|
1.0
|
|
O3B
|
D:GDP202
|
3.6
|
89.9
|
1.0
|
|
MG
|
D:MG203
|
3.8
|
0.2
|
1.0
|
|
CA
|
D:GLY69
|
3.9
|
0.6
|
1.0
|
|
CA
|
D:ALA68
|
4.0
|
0.7
|
1.0
|
|
C
|
D:ALA68
|
4.0
|
0.7
|
1.0
|
|
CA
|
D:SER20
|
4.1
|
0.9
|
1.0
|
|
N
|
D:GLY21
|
4.3
|
98.4
|
1.0
|
|
C
|
D:THR67
|
4.3
|
0.7
|
1.0
|
|
O
|
D:ASP19
|
4.5
|
0.0
|
1.0
|
|
CD
|
D:LYS24
|
4.6
|
90.9
|
1.0
|
|
CB
|
D:SER20
|
4.6
|
0.3
|
1.0
|
|
N
|
D:ALA68
|
4.7
|
0.5
|
1.0
|
|
O3A
|
D:GDP202
|
4.7
|
89.9
|
1.0
|
|
C
|
D:SER20
|
4.8
|
0.4
|
1.0
|
|
CB
|
D:THR43
|
4.8
|
0.8
|
1.0
|
|
O
|
D:HOH302
|
4.8
|
37.2
|
1.0
|
|
N
|
D:SER20
|
4.9
|
0.8
|
1.0
|
|
Fluorine binding site 5 out
of 9 in 4fmb
Go back to
Fluorine Binding Sites List in 4fmb
Fluorine binding site 5 out
of 9 in the Vira-RAB1 Complex Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Vira-RAB1 Complex Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F201
b:89.9
occ:1.00
|
F2
|
D:AF3201
|
0.0
|
89.9
|
1.0
|
|
AL
|
D:AF3201
|
1.7
|
89.9
|
1.0
|
|
N
|
D:THR43
|
2.5
|
0.4
|
1.0
|
|
O1B
|
D:GDP202
|
2.5
|
89.9
|
1.0
|
|
MG
|
D:MG203
|
2.6
|
0.2
|
1.0
|
|
O
|
C:HOH501
|
2.7
|
89.9
|
1.0
|
|
F1
|
D:AF3201
|
2.8
|
89.9
|
1.0
|
|
CB
|
D:THR43
|
2.9
|
0.8
|
1.0
|
|
F3
|
D:AF3201
|
2.9
|
89.9
|
1.0
|
|
O
|
D:HOH302
|
3.0
|
37.2
|
1.0
|
|
CA
|
D:THR43
|
3.1
|
0.3
|
1.0
|
|
OG1
|
D:THR43
|
3.3
|
99.5
|
1.0
|
|
O
|
D:HOH301
|
3.5
|
49.0
|
1.0
|
|
C
|
D:SER42
|
3.6
|
0.4
|
1.0
|
|
O
|
D:THR43
|
3.6
|
0.2
|
1.0
|
|
NH1
|
C:ARG188
|
3.8
|
0.8
|
1.0
|
|
PB
|
D:GDP202
|
3.8
|
89.9
|
1.0
|
|
CA
|
D:SER42
|
3.8
|
0.8
|
1.0
|
|
C
|
D:THR43
|
3.9
|
0.3
|
1.0
|
|
O3B
|
D:GDP202
|
4.0
|
89.9
|
1.0
|
|
CG2
|
D:THR43
|
4.2
|
0.3
|
1.0
|
|
CB
|
D:SER42
|
4.3
|
0.1
|
1.0
|
|
O
|
D:THR67
|
4.5
|
0.8
|
1.0
|
|
O
|
D:SER42
|
4.6
|
0.1
|
1.0
|
|
NE2
|
C:GLN280
|
4.7
|
0.5
|
1.0
|
|
O2B
|
D:GDP202
|
4.7
|
89.9
|
1.0
|
|
CZ
|
C:ARG188
|
4.7
|
0.3
|
1.0
|
|
NH2
|
C:ARG188
|
4.8
|
0.4
|
1.0
|
|
OG
|
D:SER25
|
4.8
|
89.6
|
1.0
|
|
O3A
|
D:GDP202
|
5.0
|
89.9
|
1.0
|
|
CA
|
D:ALA68
|
5.0
|
0.7
|
1.0
|
|
O2A
|
D:GDP202
|
5.0
|
89.9
|
1.0
|
|
Fluorine binding site 6 out
of 9 in 4fmb
Go back to
Fluorine Binding Sites List in 4fmb
Fluorine binding site 6 out
of 9 in the Vira-RAB1 Complex Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Vira-RAB1 Complex Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F201
b:89.9
occ:1.00
|
F3
|
D:AF3201
|
0.0
|
89.9
|
1.0
|
|
AL
|
D:AF3201
|
1.7
|
89.9
|
1.0
|
|
O
|
C:HOH501
|
2.5
|
89.9
|
1.0
|
|
O1B
|
D:GDP202
|
2.6
|
89.9
|
1.0
|
|
NH2
|
C:ARG188
|
2.8
|
0.4
|
1.0
|
|
F2
|
D:AF3201
|
2.9
|
89.9
|
1.0
|
|
F1
|
D:AF3201
|
3.0
|
89.9
|
1.0
|
|
NH1
|
C:ARG188
|
3.2
|
0.8
|
1.0
|
|
NE2
|
C:GLN280
|
3.3
|
0.5
|
1.0
|
|
CZ
|
C:ARG188
|
3.5
|
0.3
|
1.0
|
|
N
|
D:GLY21
|
3.5
|
98.4
|
1.0
|
|
CB
|
D:SER20
|
3.6
|
0.3
|
1.0
|
|
CA
|
D:SER20
|
3.8
|
0.9
|
1.0
|
|
C
|
D:SER20
|
4.0
|
0.4
|
1.0
|
|
PB
|
D:GDP202
|
4.0
|
89.9
|
1.0
|
|
OE1
|
C:GLN280
|
4.1
|
0.8
|
1.0
|
|
CD
|
C:GLN280
|
4.1
|
0.5
|
1.0
|
|
O2B
|
D:GDP202
|
4.1
|
89.9
|
1.0
|
|
CA
|
D:GLY21
|
4.3
|
98.3
|
1.0
|
|
CB
|
D:SER42
|
4.5
|
0.1
|
1.0
|
|
N
|
D:THR43
|
4.6
|
0.4
|
1.0
|
|
CA
|
D:SER42
|
4.7
|
0.8
|
1.0
|
|
NE
|
C:ARG188
|
4.8
|
0.2
|
1.0
|
|
O3A
|
D:GDP202
|
4.8
|
89.9
|
1.0
|
|
OD1
|
C:ASP185
|
4.8
|
94.6
|
1.0
|
|
N
|
D:GLY69
|
4.8
|
0.6
|
1.0
|
|
O
|
D:HOH302
|
5.0
|
37.2
|
1.0
|
|
O
|
D:SER20
|
5.0
|
0.3
|
1.0
|
|
OG
|
D:SER20
|
5.0
|
0.1
|
1.0
|
|
Fluorine binding site 7 out
of 9 in 4fmb
Go back to
Fluorine Binding Sites List in 4fmb
Fluorine binding site 7 out
of 9 in the Vira-RAB1 Complex Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Vira-RAB1 Complex Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F201
b:0.8
occ:1.00
|
F1
|
F:AF3201
|
0.0
|
0.8
|
1.0
|
|
AL
|
F:AF3201
|
1.7
|
0.8
|
1.0
|
|
O2B
|
F:GDP202
|
2.6
|
0.8
|
1.0
|
|
O
|
E:HOH501
|
2.6
|
0.8
|
1.0
|
|
O1B
|
F:GDP202
|
2.7
|
0.8
|
1.0
|
|
NZ
|
F:LYS24
|
2.7
|
88.8
|
1.0
|
|
F2
|
F:AF3201
|
2.9
|
0.8
|
1.0
|
|
F3
|
F:AF3201
|
2.9
|
0.8
|
1.0
|
|
PB
|
F:GDP202
|
3.0
|
0.8
|
1.0
|
|
N
|
F:GLY69
|
3.1
|
0.1
|
1.0
|
|
CE
|
F:LYS24
|
3.1
|
91.6
|
1.0
|
|
O
|
F:THR67
|
3.6
|
0.4
|
1.0
|
|
O3B
|
F:GDP202
|
3.6
|
0.8
|
1.0
|
|
CA
|
F:SER20
|
3.7
|
0.5
|
1.0
|
|
CA
|
F:GLY69
|
3.7
|
0.0
|
1.0
|
|
N
|
F:GLY21
|
3.9
|
0.6
|
1.0
|
|
O
|
F:HOH301
|
4.0
|
49.0
|
1.0
|
|
C
|
F:ALA68
|
4.0
|
0.9
|
1.0
|
|
O
|
F:ASP19
|
4.1
|
0.3
|
1.0
|
|
CA
|
F:ALA68
|
4.2
|
0.9
|
1.0
|
|
MG
|
F:MG203
|
4.2
|
0.2
|
1.0
|
|
CB
|
F:SER20
|
4.3
|
0.9
|
1.0
|
|
C
|
F:SER20
|
4.3
|
1.0
|
1.0
|
|
N
|
F:SER20
|
4.4
|
0.5
|
1.0
|
|
O3A
|
F:GDP202
|
4.5
|
0.8
|
1.0
|
|
C
|
F:ASP19
|
4.5
|
0.2
|
1.0
|
|
CD
|
F:LYS24
|
4.6
|
92.9
|
1.0
|
|
C
|
F:THR67
|
4.6
|
0.3
|
1.0
|
|
O
|
F:GLY18
|
4.9
|
0.0
|
1.0
|
|
N
|
F:ALA68
|
4.9
|
0.8
|
1.0
|
|
Fluorine binding site 8 out
of 9 in 4fmb
Go back to
Fluorine Binding Sites List in 4fmb
Fluorine binding site 8 out
of 9 in the Vira-RAB1 Complex Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Vira-RAB1 Complex Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F201
b:0.8
occ:1.00
|
F2
|
F:AF3201
|
0.0
|
0.8
|
1.0
|
|
AL
|
F:AF3201
|
1.7
|
0.8
|
1.0
|
|
O1B
|
F:GDP202
|
2.6
|
0.8
|
1.0
|
|
O
|
E:HOH501
|
2.7
|
0.8
|
1.0
|
|
N
|
F:THR43
|
2.8
|
0.6
|
1.0
|
|
MG
|
F:MG203
|
2.8
|
0.2
|
1.0
|
|
CB
|
F:THR43
|
2.8
|
0.9
|
1.0
|
|
F1
|
F:AF3201
|
2.9
|
0.8
|
1.0
|
|
F3
|
F:AF3201
|
2.9
|
0.8
|
1.0
|
|
CA
|
F:THR43
|
3.2
|
0.5
|
1.0
|
|
O
|
F:THR43
|
3.3
|
0.3
|
1.0
|
|
O
|
F:HOH301
|
3.4
|
49.0
|
1.0
|
|
OG1
|
F:THR43
|
3.4
|
0.6
|
1.0
|
|
O
|
F:HOH302
|
3.5
|
37.2
|
1.0
|
|
C
|
F:THR43
|
3.7
|
0.5
|
1.0
|
|
C
|
F:SER42
|
3.9
|
0.1
|
1.0
|
|
PB
|
F:GDP202
|
3.9
|
0.8
|
1.0
|
|
CG2
|
F:THR43
|
4.0
|
0.3
|
1.0
|
|
O
|
F:THR67
|
4.1
|
0.4
|
1.0
|
|
O3B
|
F:GDP202
|
4.2
|
0.8
|
1.0
|
|
NH1
|
E:ARG188
|
4.3
|
0.7
|
1.0
|
|
CA
|
F:SER42
|
4.3
|
0.4
|
1.0
|
|
CA
|
F:ALA68
|
4.4
|
0.9
|
1.0
|
|
NE2
|
E:GLN280
|
4.4
|
0.4
|
1.0
|
|
O2B
|
F:GDP202
|
4.5
|
0.8
|
1.0
|
|
CB
|
F:SER42
|
4.7
|
0.3
|
1.0
|
|
N
|
F:GLY69
|
4.7
|
0.1
|
1.0
|
|
C
|
F:THR67
|
4.8
|
0.3
|
1.0
|
|
O
|
F:SER42
|
5.0
|
0.7
|
1.0
|
|
NH2
|
E:ARG188
|
5.0
|
0.2
|
1.0
|
|
Fluorine binding site 9 out
of 9 in 4fmb
Go back to
Fluorine Binding Sites List in 4fmb
Fluorine binding site 9 out
of 9 in the Vira-RAB1 Complex Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Vira-RAB1 Complex Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F201
b:0.8
occ:1.00
|
F3
|
F:AF3201
|
0.0
|
0.8
|
1.0
|
|
AL
|
F:AF3201
|
1.7
|
0.8
|
1.0
|
|
O1B
|
F:GDP202
|
2.5
|
0.8
|
1.0
|
|
O
|
E:HOH501
|
2.6
|
0.8
|
1.0
|
|
NH2
|
E:ARG188
|
2.8
|
0.2
|
1.0
|
|
F2
|
F:AF3201
|
2.9
|
0.8
|
1.0
|
|
F1
|
F:AF3201
|
2.9
|
0.8
|
1.0
|
|
NH1
|
E:ARG188
|
3.3
|
0.7
|
1.0
|
|
N
|
F:GLY21
|
3.4
|
0.6
|
1.0
|
|
CZ
|
E:ARG188
|
3.5
|
0.2
|
1.0
|
|
NE2
|
E:GLN280
|
3.5
|
0.4
|
1.0
|
|
PB
|
F:GDP202
|
3.7
|
0.8
|
1.0
|
|
O2B
|
F:GDP202
|
3.7
|
0.8
|
1.0
|
|
CB
|
F:SER20
|
3.8
|
0.9
|
1.0
|
|
CA
|
F:SER20
|
3.9
|
0.5
|
1.0
|
|
C
|
F:SER20
|
4.0
|
1.0
|
1.0
|
|
OE1
|
E:GLN280
|
4.2
|
0.6
|
1.0
|
|
CA
|
F:GLY21
|
4.2
|
0.5
|
1.0
|
|
CD
|
E:GLN280
|
4.3
|
0.3
|
1.0
|
|
O3A
|
F:GDP202
|
4.4
|
0.8
|
1.0
|
|
CB
|
F:SER42
|
4.5
|
0.3
|
1.0
|
|
N
|
F:THR43
|
4.6
|
0.6
|
1.0
|
|
CA
|
F:SER42
|
4.7
|
0.4
|
1.0
|
|
NE
|
E:ARG188
|
4.8
|
0.0
|
1.0
|
|
O3B
|
F:GDP202
|
4.9
|
0.8
|
1.0
|
|
O
|
F:HOH302
|
4.9
|
37.2
|
1.0
|
|
MG
|
F:MG203
|
4.9
|
0.2
|
1.0
|
|
OD1
|
E:ASP185
|
4.9
|
94.3
|
1.0
|
|
N
|
F:GLY69
|
5.0
|
0.1
|
1.0
|
|
O
|
F:SER20
|
5.0
|
0.9
|
1.0
|
|
Reference:
N.Dong,
Y.Zhu,
Q.Lu,
L.Hu,
Y.Zheng,
F.Shao.
Structurally Distinct Bacterial Tbc-Like Gaps Link Arf Gtpase to RAB1 Inactivation to Counteract Host Defenses. Cell(Cambridge,Mass.) V. 150 1029 2012.
ISSN: ISSN 0092-8674
PubMed: 22939626
DOI: 10.1016/J.CELL.2012.06.050
Page generated: Thu Aug 1 01:36:59 2024
|
