Fluorine in PDB 4fv1: Crystal Structure of the ERK2 Complexed with EK4
Enzymatic activity of Crystal Structure of the ERK2 Complexed with EK4
All present enzymatic activity of Crystal Structure of the ERK2 Complexed with EK4:
2.7.11.24;
Protein crystallography data
The structure of Crystal Structure of the ERK2 Complexed with EK4, PDB code: 4fv1
was solved by
Y.N.Kang,
J.A.Stuckey,
X.Xie,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.35 /
1.99
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.750,
70.070,
60.330,
90.00,
109.95,
90.00
|
R / Rfree (%)
|
18 /
22.5
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of the ERK2 Complexed with EK4
(pdb code 4fv1). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Crystal Structure of the ERK2 Complexed with EK4, PDB code: 4fv1:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 4fv1
Go back to
Fluorine Binding Sites List in 4fv1
Fluorine binding site 1 out
of 3 in the Crystal Structure of the ERK2 Complexed with EK4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of the ERK2 Complexed with EK4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:40.9
occ:1.00
|
F1
|
A:EK4401
|
0.0
|
40.9
|
1.0
|
C1
|
A:EK4401
|
1.3
|
38.9
|
1.0
|
F3
|
A:EK4401
|
2.1
|
40.2
|
1.0
|
F2
|
A:EK4401
|
2.1
|
39.3
|
1.0
|
C2
|
A:EK4401
|
2.4
|
34.3
|
1.0
|
H7
|
A:EK4401
|
2.4
|
33.2
|
0.0
|
C7
|
A:EK4401
|
2.7
|
33.1
|
1.0
|
C3
|
A:EK4401
|
3.6
|
31.8
|
1.0
|
O
|
A:HOH630
|
3.6
|
40.7
|
1.0
|
O
|
A:HOH629
|
3.7
|
35.3
|
1.0
|
O
|
A:HOH560
|
3.7
|
25.2
|
1.0
|
O
|
A:GLU31
|
3.8
|
59.0
|
1.0
|
H4
|
A:EK4401
|
4.0
|
32.0
|
0.0
|
C6
|
A:EK4401
|
4.1
|
31.9
|
1.0
|
CA
|
A:GLY30
|
4.2
|
48.6
|
1.0
|
N
|
A:GLU31
|
4.2
|
52.6
|
1.0
|
C
|
A:GLY30
|
4.2
|
53.6
|
1.0
|
O
|
A:HOH650
|
4.3
|
40.3
|
1.0
|
H19
|
A:EK4401
|
4.5
|
41.8
|
0.0
|
O
|
A:HOH679
|
4.5
|
37.9
|
1.0
|
C
|
A:GLU31
|
4.6
|
59.6
|
1.0
|
H12
|
A:EK4401
|
4.7
|
37.9
|
0.0
|
H6
|
A:EK4401
|
4.8
|
32.0
|
0.0
|
C4
|
A:EK4401
|
4.8
|
31.2
|
1.0
|
OD2
|
A:ASP109
|
4.8
|
33.8
|
1.0
|
O
|
A:GLY30
|
4.9
|
52.2
|
1.0
|
N
|
A:GLY30
|
4.9
|
47.9
|
1.0
|
H18
|
A:EK4401
|
4.9
|
42.9
|
0.0
|
CA
|
A:GLU31
|
5.0
|
53.9
|
1.0
|
C5
|
A:EK4401
|
5.0
|
32.1
|
1.0
|
H9
|
A:EK4401
|
5.0
|
26.0
|
0.0
|
|
Fluorine binding site 2 out
of 3 in 4fv1
Go back to
Fluorine Binding Sites List in 4fv1
Fluorine binding site 2 out
of 3 in the Crystal Structure of the ERK2 Complexed with EK4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of the ERK2 Complexed with EK4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:39.3
occ:1.00
|
F2
|
A:EK4401
|
0.0
|
39.3
|
1.0
|
C1
|
A:EK4401
|
1.3
|
38.9
|
1.0
|
F3
|
A:EK4401
|
2.1
|
40.2
|
1.0
|
F1
|
A:EK4401
|
2.1
|
40.9
|
1.0
|
C2
|
A:EK4401
|
2.4
|
34.3
|
1.0
|
H4
|
A:EK4401
|
2.9
|
32.0
|
0.0
|
C3
|
A:EK4401
|
3.0
|
31.8
|
1.0
|
C
|
A:GLY30
|
3.2
|
53.6
|
1.0
|
CA
|
A:GLY30
|
3.4
|
48.6
|
1.0
|
O
|
A:GLY30
|
3.4
|
52.2
|
1.0
|
CG2
|
A:VAL37
|
3.4
|
41.2
|
1.0
|
CB
|
A:VAL37
|
3.4
|
41.8
|
1.0
|
C7
|
A:EK4401
|
3.5
|
33.1
|
1.0
|
N
|
A:GLY30
|
3.7
|
47.9
|
1.0
|
H7
|
A:EK4401
|
3.7
|
33.2
|
0.0
|
N
|
A:GLU31
|
3.8
|
52.6
|
1.0
|
H19
|
A:EK4401
|
3.9
|
41.8
|
0.0
|
H18
|
A:EK4401
|
4.1
|
42.9
|
0.0
|
CG1
|
A:VAL37
|
4.3
|
41.5
|
1.0
|
C4
|
A:EK4401
|
4.3
|
31.2
|
1.0
|
O
|
A:GLU31
|
4.3
|
59.0
|
1.0
|
CG2
|
A:ILE29
|
4.4
|
47.7
|
1.0
|
CA
|
A:GLU31
|
4.5
|
53.9
|
1.0
|
CA
|
A:VAL37
|
4.5
|
38.2
|
1.0
|
C
|
A:ILE29
|
4.6
|
50.3
|
1.0
|
H9
|
A:EK4401
|
4.6
|
26.0
|
0.0
|
N
|
A:VAL37
|
4.6
|
39.2
|
1.0
|
C6
|
A:EK4401
|
4.7
|
31.9
|
1.0
|
C
|
A:GLU31
|
4.7
|
59.6
|
1.0
|
C23
|
A:EK4401
|
4.7
|
41.8
|
1.0
|
C22
|
A:EK4401
|
4.8
|
42.9
|
1.0
|
CB
|
A:ILE29
|
4.9
|
47.5
|
1.0
|
O
|
A:VAL37
|
5.0
|
42.7
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 4fv1
Go back to
Fluorine Binding Sites List in 4fv1
Fluorine binding site 3 out
of 3 in the Crystal Structure of the ERK2 Complexed with EK4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of the ERK2 Complexed with EK4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:40.2
occ:1.00
|
F3
|
A:EK4401
|
0.0
|
40.2
|
1.0
|
C1
|
A:EK4401
|
1.3
|
38.9
|
1.0
|
F1
|
A:EK4401
|
2.1
|
40.9
|
1.0
|
F2
|
A:EK4401
|
2.1
|
39.3
|
1.0
|
C2
|
A:EK4401
|
2.3
|
34.3
|
1.0
|
H19
|
A:EK4401
|
2.5
|
41.8
|
0.0
|
H4
|
A:EK4401
|
2.9
|
32.0
|
0.0
|
C3
|
A:EK4401
|
2.9
|
31.8
|
1.0
|
O
|
A:HOH679
|
3.2
|
37.9
|
1.0
|
H9
|
A:EK4401
|
3.3
|
26.0
|
0.0
|
C23
|
A:EK4401
|
3.4
|
41.8
|
1.0
|
H11
|
A:EK4401
|
3.4
|
28.5
|
0.0
|
C7
|
A:EK4401
|
3.4
|
33.1
|
1.0
|
H12
|
A:EK4401
|
3.4
|
37.9
|
0.0
|
H7
|
A:EK4401
|
3.7
|
33.2
|
0.0
|
O
|
A:HOH629
|
3.7
|
35.3
|
1.0
|
H18
|
A:EK4401
|
3.8
|
42.9
|
0.0
|
CG2
|
A:VAL37
|
3.8
|
41.2
|
1.0
|
O
|
A:HOH560
|
3.8
|
25.2
|
1.0
|
N4
|
A:EK4401
|
3.9
|
28.3
|
1.0
|
C22
|
A:EK4401
|
4.0
|
42.9
|
1.0
|
C12
|
A:EK4401
|
4.1
|
26.0
|
1.0
|
C4
|
A:EK4401
|
4.2
|
31.2
|
1.0
|
C17
|
A:EK4401
|
4.3
|
37.9
|
1.0
|
C18
|
A:EK4401
|
4.3
|
40.0
|
1.0
|
O
|
A:HOH630
|
4.4
|
40.7
|
1.0
|
C16
|
A:EK4401
|
4.4
|
35.5
|
1.0
|
CB
|
A:VAL37
|
4.5
|
41.8
|
1.0
|
C6
|
A:EK4401
|
4.6
|
31.9
|
1.0
|
O
|
A:GLU31
|
4.6
|
59.0
|
1.0
|
C13
|
A:EK4401
|
4.7
|
27.3
|
1.0
|
C15
|
A:EK4401
|
4.7
|
27.8
|
1.0
|
O2
|
A:EK4401
|
4.8
|
41.7
|
1.0
|
C5
|
A:EK4401
|
4.9
|
32.1
|
1.0
|
|
Reference:
Y.N.Kang,
J.A.Stuckey,
X.Xie.
Crystal Structure of the ERK2 Complexed with EK4 To Be Published.
Page generated: Thu Aug 1 01:41:40 2024
|