Fluorine in PDB 4g6o: Crystal Structure of the ERK2
Enzymatic activity of Crystal Structure of the ERK2
All present enzymatic activity of Crystal Structure of the ERK2:
2.7.11.24;
Protein crystallography data
The structure of Crystal Structure of the ERK2, PDB code: 4g6o
was solved by
Y.N.Kang,
J.A.Stuckey,
X.Xie,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.87 /
2.20
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.634,
70.262,
60.244,
90.00,
109.55,
90.00
|
R / Rfree (%)
|
18 /
22.6
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of the ERK2
(pdb code 4g6o). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Crystal Structure of the ERK2, PDB code: 4g6o:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 4g6o
Go back to
Fluorine Binding Sites List in 4g6o
Fluorine binding site 1 out
of 3 in the Crystal Structure of the ERK2
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of the ERK2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:59.1
occ:1.00
|
F1
|
A:E28401
|
0.0
|
59.1
|
1.0
|
C1
|
A:E28401
|
1.3
|
56.8
|
1.0
|
F3
|
A:E28401
|
2.1
|
55.7
|
1.0
|
F2
|
A:E28401
|
2.1
|
57.7
|
1.0
|
C2
|
A:E28401
|
2.4
|
53.1
|
1.0
|
C
|
A:GLY30
|
3.1
|
73.2
|
1.0
|
CA
|
A:GLY30
|
3.2
|
69.5
|
1.0
|
C7
|
A:E28401
|
3.2
|
53.7
|
1.0
|
H10
|
A:E28401
|
3.2
|
54.4
|
0.0
|
C3
|
A:E28401
|
3.2
|
50.1
|
1.0
|
H6
|
A:E28401
|
3.3
|
50.2
|
0.0
|
N
|
A:GLY30
|
3.4
|
70.1
|
1.0
|
N
|
A:GLU31
|
3.5
|
69.3
|
1.0
|
C8
|
A:E28401
|
3.5
|
54.4
|
1.0
|
O
|
A:GLY30
|
3.6
|
73.0
|
1.0
|
CB
|
A:VAL37
|
3.7
|
65.3
|
1.0
|
N1
|
A:E28401
|
3.7
|
55.8
|
1.0
|
CG2
|
A:VAL37
|
3.8
|
64.7
|
1.0
|
CG2
|
A:ILE29
|
4.1
|
73.2
|
1.0
|
H2
|
A:E28401
|
4.3
|
55.8
|
0.0
|
CG1
|
A:VAL37
|
4.3
|
64.8
|
1.0
|
CA
|
A:GLU31
|
4.3
|
87.2
|
1.0
|
C
|
A:ILE29
|
4.3
|
74.2
|
1.0
|
H17
|
A:E28401
|
4.4
|
60.4
|
0.0
|
H1
|
A:E28401
|
4.4
|
55.8
|
0.0
|
C6
|
A:E28401
|
4.5
|
52.6
|
1.0
|
C4
|
A:E28401
|
4.5
|
48.9
|
1.0
|
C
|
A:GLU31
|
4.5
|
97.3
|
1.0
|
H9
|
A:E28401
|
4.6
|
54.4
|
0.0
|
H18
|
A:E28401
|
4.7
|
61.5
|
0.0
|
CB
|
A:ILE29
|
4.7
|
73.0
|
1.0
|
CA
|
A:VAL37
|
4.9
|
62.4
|
1.0
|
O
|
A:ILE29
|
5.0
|
74.5
|
1.0
|
N
|
A:VAL37
|
5.0
|
64.5
|
1.0
|
C5
|
A:E28401
|
5.0
|
51.2
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 4g6o
Go back to
Fluorine Binding Sites List in 4g6o
Fluorine binding site 2 out
of 3 in the Crystal Structure of the ERK2
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of the ERK2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:57.7
occ:1.00
|
F2
|
A:E28401
|
0.0
|
57.7
|
1.0
|
C1
|
A:E28401
|
1.3
|
56.8
|
1.0
|
F3
|
A:E28401
|
2.1
|
55.7
|
1.0
|
F1
|
A:E28401
|
2.1
|
59.1
|
1.0
|
C2
|
A:E28401
|
2.4
|
53.1
|
1.0
|
H6
|
A:E28401
|
2.4
|
50.2
|
0.0
|
H17
|
A:E28401
|
2.7
|
60.4
|
0.0
|
C3
|
A:E28401
|
2.7
|
50.1
|
1.0
|
H14
|
A:E28401
|
3.1
|
55.5
|
0.0
|
CG2
|
A:VAL37
|
3.1
|
64.7
|
1.0
|
H12
|
A:E28401
|
3.5
|
46.5
|
0.0
|
C7
|
A:E28401
|
3.7
|
53.7
|
1.0
|
CB
|
A:VAL37
|
3.7
|
65.3
|
1.0
|
C19
|
A:E28401
|
3.7
|
60.3
|
1.0
|
N5
|
A:E28401
|
3.8
|
55.6
|
1.0
|
C13
|
A:E28401
|
3.9
|
46.5
|
1.0
|
C4
|
A:E28401
|
4.1
|
48.9
|
1.0
|
CG1
|
A:VAL37
|
4.1
|
64.8
|
1.0
|
H18
|
A:E28401
|
4.1
|
61.5
|
0.0
|
H10
|
A:E28401
|
4.1
|
54.4
|
0.0
|
C14
|
A:E28401
|
4.2
|
48.3
|
1.0
|
H19
|
A:E28401
|
4.3
|
61.5
|
0.0
|
C16
|
A:E28401
|
4.3
|
51.8
|
1.0
|
C8
|
A:E28401
|
4.4
|
54.4
|
1.0
|
C20
|
A:E28401
|
4.5
|
60.9
|
1.0
|
C21
|
A:E28401
|
4.5
|
61.6
|
1.0
|
C17
|
A:E28401
|
4.6
|
57.8
|
1.0
|
C18
|
A:E28401
|
4.7
|
59.3
|
1.0
|
C12
|
A:E28401
|
4.7
|
45.6
|
1.0
|
C6
|
A:E28401
|
4.8
|
52.6
|
1.0
|
H16
|
A:E28401
|
4.8
|
57.8
|
0.0
|
C
|
A:GLY30
|
4.9
|
73.2
|
1.0
|
C5
|
A:E28401
|
4.9
|
51.2
|
1.0
|
C9
|
A:E28401
|
5.0
|
44.0
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 4g6o
Go back to
Fluorine Binding Sites List in 4g6o
Fluorine binding site 3 out
of 3 in the Crystal Structure of the ERK2
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of the ERK2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:55.7
occ:1.00
|
F3
|
A:E28401
|
0.0
|
55.7
|
1.0
|
C1
|
A:E28401
|
1.3
|
56.8
|
1.0
|
F2
|
A:E28401
|
2.1
|
57.7
|
1.0
|
F1
|
A:E28401
|
2.1
|
59.1
|
1.0
|
H10
|
A:E28401
|
2.3
|
54.4
|
0.0
|
C2
|
A:E28401
|
2.4
|
53.1
|
1.0
|
C7
|
A:E28401
|
2.9
|
53.7
|
1.0
|
C8
|
A:E28401
|
3.0
|
54.4
|
1.0
|
C3
|
A:E28401
|
3.5
|
50.1
|
1.0
|
H17
|
A:E28401
|
3.6
|
60.4
|
0.0
|
H9
|
A:E28401
|
3.8
|
54.4
|
0.0
|
H6
|
A:E28401
|
3.9
|
50.2
|
0.0
|
H14
|
A:E28401
|
3.9
|
55.5
|
0.0
|
N1
|
A:E28401
|
3.9
|
55.8
|
1.0
|
C6
|
A:E28401
|
4.3
|
52.6
|
1.0
|
H2
|
A:E28401
|
4.4
|
55.8
|
0.0
|
N
|
A:GLU31
|
4.4
|
69.3
|
1.0
|
C
|
A:GLU31
|
4.5
|
97.3
|
1.0
|
C19
|
A:E28401
|
4.5
|
60.3
|
1.0
|
H12
|
A:E28401
|
4.5
|
46.5
|
0.0
|
H18
|
A:E28401
|
4.6
|
61.5
|
0.0
|
C
|
A:GLY30
|
4.6
|
73.2
|
1.0
|
C4
|
A:E28401
|
4.7
|
48.9
|
1.0
|
CA
|
A:GLY30
|
4.8
|
69.5
|
1.0
|
N5
|
A:E28401
|
4.8
|
55.6
|
1.0
|
H1
|
A:E28401
|
4.8
|
55.8
|
0.0
|
CA
|
A:GLU31
|
5.0
|
87.2
|
1.0
|
CG2
|
A:VAL37
|
5.0
|
64.7
|
1.0
|
H16
|
A:E28401
|
5.0
|
57.8
|
0.0
|
H8
|
A:E28401
|
5.0
|
52.6
|
0.0
|
|
Reference:
Y.N.Kang,
J.A.Stuckey,
X.Xie.
Crystal Structure of the ERK2 Complexed with E28 To Be Published.
Page generated: Thu Aug 1 01:46:47 2024
|