Fluorine in PDB 4gca: Complex of Aldose Reductase with Inhibitor Idd 1219
Enzymatic activity of Complex of Aldose Reductase with Inhibitor Idd 1219
All present enzymatic activity of Complex of Aldose Reductase with Inhibitor Idd 1219:
1.1.1.21;
Protein crystallography data
The structure of Complex of Aldose Reductase with Inhibitor Idd 1219, PDB code: 4gca
was solved by
A.D.Podjarny,
M.Van Zandt,
L.S.Geraci,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
14.74 /
0.90
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
47.102,
47.218,
39.953,
67.83,
76.96,
76.15
|
R / Rfree (%)
|
13.4 /
14.5
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Complex of Aldose Reductase with Inhibitor Idd 1219
(pdb code 4gca). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Complex of Aldose Reductase with Inhibitor Idd 1219, PDB code: 4gca:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 4gca
Go back to
Fluorine Binding Sites List in 4gca
Fluorine binding site 1 out
of 3 in the Complex of Aldose Reductase with Inhibitor Idd 1219
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Complex of Aldose Reductase with Inhibitor Idd 1219 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F402
b:9.1
occ:1.00
|
F4
|
A:2X9402
|
0.0
|
9.1
|
1.0
|
C33
|
A:2X9402
|
1.3
|
7.8
|
1.0
|
C36
|
A:2X9402
|
2.3
|
8.0
|
1.0
|
C37
|
A:2X9402
|
2.3
|
7.0
|
1.0
|
F13
|
A:2X9402
|
2.7
|
9.4
|
1.0
|
CD1
|
A:TYR309
|
3.4
|
9.7
|
1.0
|
CB
|
A:CYS303
|
3.5
|
12.1
|
1.0
|
C34
|
A:2X9402
|
3.6
|
6.6
|
1.0
|
C35
|
A:2X9402
|
3.6
|
6.9
|
1.0
|
CE1
|
A:TYR309
|
3.7
|
10.7
|
1.0
|
CD
|
A:PRO310
|
3.8
|
7.4
|
1.0
|
CG2
|
A:THR113
|
3.8
|
7.1
|
1.0
|
CE3
|
A:TRP111
|
3.9
|
6.1
|
1.0
|
OG1
|
A:THR113
|
4.0
|
6.6
|
1.0
|
C32
|
A:2X9402
|
4.1
|
6.5
|
1.0
|
SG
|
A:CYS303
|
4.2
|
12.7
|
1.0
|
CZ3
|
A:TRP111
|
4.2
|
7.0
|
1.0
|
CG
|
A:TYR309
|
4.5
|
9.1
|
1.0
|
CB
|
A:THR113
|
4.5
|
6.7
|
1.0
|
CG
|
A:PRO310
|
4.6
|
7.6
|
1.0
|
CA
|
A:TYR309
|
4.6
|
8.4
|
1.0
|
O
|
A:CYS303
|
4.6
|
11.2
|
1.0
|
F38
|
A:2X9402
|
4.7
|
6.9
|
1.0
|
CD2
|
A:TRP111
|
4.7
|
5.4
|
1.0
|
N29
|
A:2X9402
|
4.8
|
7.0
|
1.0
|
CA
|
A:CYS303
|
4.8
|
11.4
|
1.0
|
CB
|
A:TYR309
|
4.9
|
8.8
|
1.0
|
C
|
A:CYS303
|
4.9
|
11.4
|
1.0
|
N
|
A:PRO310
|
4.9
|
7.7
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 4gca
Go back to
Fluorine Binding Sites List in 4gca
Fluorine binding site 2 out
of 3 in the Complex of Aldose Reductase with Inhibitor Idd 1219
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Complex of Aldose Reductase with Inhibitor Idd 1219 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F402
b:9.4
occ:1.00
|
F13
|
A:2X9402
|
0.0
|
9.4
|
1.0
|
C36
|
A:2X9402
|
1.3
|
8.0
|
1.0
|
C35
|
A:2X9402
|
2.3
|
6.9
|
1.0
|
C33
|
A:2X9402
|
2.4
|
7.8
|
1.0
|
F4
|
A:2X9402
|
2.7
|
9.1
|
1.0
|
N29
|
A:2X9402
|
2.9
|
7.0
|
1.0
|
N
|
A:LEU300
|
3.2
|
11.6
|
1.0
|
CE1
|
A:TYR309
|
3.4
|
10.7
|
1.0
|
CA
|
A:ALA299
|
3.5
|
11.1
|
1.0
|
C32
|
A:2X9402
|
3.6
|
6.5
|
1.0
|
C37
|
A:2X9402
|
3.6
|
7.0
|
1.0
|
CZ3
|
A:TRP111
|
3.7
|
7.0
|
1.0
|
C
|
A:ALA299
|
3.8
|
11.6
|
1.0
|
CB
|
A:ALA299
|
3.9
|
11.7
|
1.0
|
CD1
|
A:TYR309
|
4.0
|
9.7
|
1.0
|
C34
|
A:2X9402
|
4.1
|
6.6
|
1.0
|
CH2
|
A:TRP111
|
4.1
|
7.1
|
1.0
|
O
|
A:LEU300
|
4.1
|
12.9
|
1.0
|
C28
|
A:2X9402
|
4.2
|
6.5
|
1.0
|
CA
|
A:LEU300
|
4.2
|
12.6
|
1.0
|
CE3
|
A:TRP111
|
4.2
|
6.1
|
1.0
|
CB
|
A:CYS303
|
4.2
|
12.1
|
1.0
|
CB
|
A:LEU300
|
4.2
|
13.7
|
1.0
|
CE2
|
A:PHE311
|
4.3
|
8.4
|
1.0
|
CZ
|
A:TYR309
|
4.3
|
11.2
|
1.0
|
OH
|
A:TYR309
|
4.5
|
12.5
|
1.0
|
CD2
|
A:PHE311
|
4.6
|
8.5
|
1.0
|
C
|
A:LEU300
|
4.6
|
13.0
|
1.0
|
N
|
A:ALA299
|
4.7
|
9.9
|
1.0
|
SG
|
A:CYS303
|
4.8
|
12.7
|
1.0
|
O
|
A:ALA299
|
4.9
|
13.2
|
1.0
|
O
|
A:CYS298
|
4.9
|
8.8
|
0.7
|
S30
|
A:2X9402
|
4.9
|
6.3
|
1.0
|
O
|
A:CYS298
|
5.0
|
9.8
|
0.3
|
CZ2
|
A:TRP111
|
5.0
|
6.4
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 4gca
Go back to
Fluorine Binding Sites List in 4gca
Fluorine binding site 3 out
of 3 in the Complex of Aldose Reductase with Inhibitor Idd 1219
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Complex of Aldose Reductase with Inhibitor Idd 1219 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F402
b:6.9
occ:1.00
|
F38
|
A:2X9402
|
0.0
|
6.9
|
1.0
|
C34
|
A:2X9402
|
1.3
|
6.6
|
1.0
|
C37
|
A:2X9402
|
2.4
|
7.0
|
1.0
|
C32
|
A:2X9402
|
2.4
|
6.5
|
1.0
|
S30
|
A:2X9402
|
3.1
|
6.3
|
1.0
|
CZ
|
A:PHE115
|
3.4
|
7.8
|
1.0
|
SG
|
A:CYS80
|
3.4
|
5.7
|
1.0
|
CH2
|
A:TRP79
|
3.4
|
6.6
|
1.0
|
CG
|
A:TRP111
|
3.5
|
5.1
|
1.0
|
CD1
|
A:TRP111
|
3.5
|
5.4
|
1.0
|
C33
|
A:2X9402
|
3.6
|
7.8
|
1.0
|
C35
|
A:2X9402
|
3.6
|
6.9
|
1.0
|
CE2
|
A:PHE115
|
3.7
|
7.7
|
1.0
|
CD2
|
A:TRP111
|
3.7
|
5.4
|
1.0
|
NE1
|
A:TRP111
|
3.8
|
5.7
|
1.0
|
CZ2
|
A:TRP79
|
3.9
|
6.4
|
1.0
|
CE2
|
A:TRP111
|
3.9
|
5.7
|
1.0
|
CB
|
A:TRP111
|
4.0
|
5.1
|
1.0
|
CE1
|
A:PHE122
|
4.0
|
9.0
|
1.0
|
C36
|
A:2X9402
|
4.1
|
8.0
|
1.0
|
OG1
|
A:THR113
|
4.1
|
6.6
|
1.0
|
CZ3
|
A:TRP79
|
4.2
|
6.0
|
1.0
|
CE1
|
A:PHE115
|
4.4
|
7.9
|
1.0
|
CE3
|
A:TRP111
|
4.5
|
6.1
|
1.0
|
C28
|
A:2X9402
|
4.6
|
6.5
|
1.0
|
CZ
|
A:PHE122
|
4.6
|
9.0
|
1.0
|
N29
|
A:2X9402
|
4.7
|
7.0
|
1.0
|
F4
|
A:2X9402
|
4.7
|
9.1
|
1.0
|
CB
|
A:CYS80
|
4.7
|
5.6
|
1.0
|
SG
|
A:CYS303
|
4.8
|
12.7
|
1.0
|
CZ2
|
A:TRP111
|
4.8
|
6.4
|
1.0
|
CD2
|
A:PHE115
|
4.9
|
7.1
|
1.0
|
CD1
|
A:PHE122
|
4.9
|
8.8
|
1.0
|
CE2
|
A:TRP79
|
4.9
|
6.0
|
1.0
|
|
Reference:
A.D.Podjarny,
M.Van Zandt,
L.S.Geraci.
Complex of Aldose Reductase with Inhibitor Idd 1219 To Be Published.
Page generated: Thu Aug 1 01:48:55 2024
|