Atomistry » Fluorine » PDB 4fxq-4goa » 4gca
Atomistry »
  Fluorine »
    PDB 4fxq-4goa »
      4gca »

Fluorine in PDB 4gca: Complex of Aldose Reductase with Inhibitor Idd 1219

Enzymatic activity of Complex of Aldose Reductase with Inhibitor Idd 1219

All present enzymatic activity of Complex of Aldose Reductase with Inhibitor Idd 1219:
1.1.1.21;

Protein crystallography data

The structure of Complex of Aldose Reductase with Inhibitor Idd 1219, PDB code: 4gca was solved by A.D.Podjarny, M.Van Zandt, L.S.Geraci, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.74 / 0.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 47.102, 47.218, 39.953, 67.83, 76.96, 76.15
R / Rfree (%) 13.4 / 14.5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Complex of Aldose Reductase with Inhibitor Idd 1219 (pdb code 4gca). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Complex of Aldose Reductase with Inhibitor Idd 1219, PDB code: 4gca:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 4gca

Go back to Fluorine Binding Sites List in 4gca
Fluorine binding site 1 out of 3 in the Complex of Aldose Reductase with Inhibitor Idd 1219


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Complex of Aldose Reductase with Inhibitor Idd 1219 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:9.1
occ:1.00
F4 A:2X9402 0.0 9.1 1.0
C33 A:2X9402 1.3 7.8 1.0
C36 A:2X9402 2.3 8.0 1.0
C37 A:2X9402 2.3 7.0 1.0
F13 A:2X9402 2.7 9.4 1.0
CD1 A:TYR309 3.4 9.7 1.0
CB A:CYS303 3.5 12.1 1.0
C34 A:2X9402 3.6 6.6 1.0
C35 A:2X9402 3.6 6.9 1.0
CE1 A:TYR309 3.7 10.7 1.0
CD A:PRO310 3.8 7.4 1.0
CG2 A:THR113 3.8 7.1 1.0
CE3 A:TRP111 3.9 6.1 1.0
OG1 A:THR113 4.0 6.6 1.0
C32 A:2X9402 4.1 6.5 1.0
SG A:CYS303 4.2 12.7 1.0
CZ3 A:TRP111 4.2 7.0 1.0
CG A:TYR309 4.5 9.1 1.0
CB A:THR113 4.5 6.7 1.0
CG A:PRO310 4.6 7.6 1.0
CA A:TYR309 4.6 8.4 1.0
O A:CYS303 4.6 11.2 1.0
F38 A:2X9402 4.7 6.9 1.0
CD2 A:TRP111 4.7 5.4 1.0
N29 A:2X9402 4.8 7.0 1.0
CA A:CYS303 4.8 11.4 1.0
CB A:TYR309 4.9 8.8 1.0
C A:CYS303 4.9 11.4 1.0
N A:PRO310 4.9 7.7 1.0

Fluorine binding site 2 out of 3 in 4gca

Go back to Fluorine Binding Sites List in 4gca
Fluorine binding site 2 out of 3 in the Complex of Aldose Reductase with Inhibitor Idd 1219


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Complex of Aldose Reductase with Inhibitor Idd 1219 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:9.4
occ:1.00
F13 A:2X9402 0.0 9.4 1.0
C36 A:2X9402 1.3 8.0 1.0
C35 A:2X9402 2.3 6.9 1.0
C33 A:2X9402 2.4 7.8 1.0
F4 A:2X9402 2.7 9.1 1.0
N29 A:2X9402 2.9 7.0 1.0
N A:LEU300 3.2 11.6 1.0
CE1 A:TYR309 3.4 10.7 1.0
CA A:ALA299 3.5 11.1 1.0
C32 A:2X9402 3.6 6.5 1.0
C37 A:2X9402 3.6 7.0 1.0
CZ3 A:TRP111 3.7 7.0 1.0
C A:ALA299 3.8 11.6 1.0
CB A:ALA299 3.9 11.7 1.0
CD1 A:TYR309 4.0 9.7 1.0
C34 A:2X9402 4.1 6.6 1.0
CH2 A:TRP111 4.1 7.1 1.0
O A:LEU300 4.1 12.9 1.0
C28 A:2X9402 4.2 6.5 1.0
CA A:LEU300 4.2 12.6 1.0
CE3 A:TRP111 4.2 6.1 1.0
CB A:CYS303 4.2 12.1 1.0
CB A:LEU300 4.2 13.7 1.0
CE2 A:PHE311 4.3 8.4 1.0
CZ A:TYR309 4.3 11.2 1.0
OH A:TYR309 4.5 12.5 1.0
CD2 A:PHE311 4.6 8.5 1.0
C A:LEU300 4.6 13.0 1.0
N A:ALA299 4.7 9.9 1.0
SG A:CYS303 4.8 12.7 1.0
O A:ALA299 4.9 13.2 1.0
O A:CYS298 4.9 8.8 0.7
S30 A:2X9402 4.9 6.3 1.0
O A:CYS298 5.0 9.8 0.3
CZ2 A:TRP111 5.0 6.4 1.0

Fluorine binding site 3 out of 3 in 4gca

Go back to Fluorine Binding Sites List in 4gca
Fluorine binding site 3 out of 3 in the Complex of Aldose Reductase with Inhibitor Idd 1219


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Complex of Aldose Reductase with Inhibitor Idd 1219 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:6.9
occ:1.00
F38 A:2X9402 0.0 6.9 1.0
C34 A:2X9402 1.3 6.6 1.0
C37 A:2X9402 2.4 7.0 1.0
C32 A:2X9402 2.4 6.5 1.0
S30 A:2X9402 3.1 6.3 1.0
CZ A:PHE115 3.4 7.8 1.0
SG A:CYS80 3.4 5.7 1.0
CH2 A:TRP79 3.4 6.6 1.0
CG A:TRP111 3.5 5.1 1.0
CD1 A:TRP111 3.5 5.4 1.0
C33 A:2X9402 3.6 7.8 1.0
C35 A:2X9402 3.6 6.9 1.0
CE2 A:PHE115 3.7 7.7 1.0
CD2 A:TRP111 3.7 5.4 1.0
NE1 A:TRP111 3.8 5.7 1.0
CZ2 A:TRP79 3.9 6.4 1.0
CE2 A:TRP111 3.9 5.7 1.0
CB A:TRP111 4.0 5.1 1.0
CE1 A:PHE122 4.0 9.0 1.0
C36 A:2X9402 4.1 8.0 1.0
OG1 A:THR113 4.1 6.6 1.0
CZ3 A:TRP79 4.2 6.0 1.0
CE1 A:PHE115 4.4 7.9 1.0
CE3 A:TRP111 4.5 6.1 1.0
C28 A:2X9402 4.6 6.5 1.0
CZ A:PHE122 4.6 9.0 1.0
N29 A:2X9402 4.7 7.0 1.0
F4 A:2X9402 4.7 9.1 1.0
CB A:CYS80 4.7 5.6 1.0
SG A:CYS303 4.8 12.7 1.0
CZ2 A:TRP111 4.8 6.4 1.0
CD2 A:PHE115 4.9 7.1 1.0
CD1 A:PHE122 4.9 8.8 1.0
CE2 A:TRP79 4.9 6.0 1.0

Reference:

A.D.Podjarny, M.Van Zandt, L.S.Geraci. Complex of Aldose Reductase with Inhibitor Idd 1219 To Be Published.
Page generated: Thu Aug 1 01:48:55 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy