Atomistry » Fluorine » PDB 4gpb-4hw7 » 4hqh
Atomistry »
  Fluorine »
    PDB 4gpb-4hw7 »
      4hqh »

Fluorine in PDB 4hqh: Decamer Fluoro Carbocyclic Lna (R-F-Clna) Crystal Structure

Protein crystallography data

The structure of Decamer Fluoro Carbocyclic Lna (R-F-Clna) Crystal Structure, PDB code: 4hqh was solved by P.P.Seth, P.S.Pallan, E.E.Swayze, M.Egli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.67 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 26.115, 43.859, 45.787, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Decamer Fluoro Carbocyclic Lna (R-F-Clna) Crystal Structure (pdb code 4hqh). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Decamer Fluoro Carbocyclic Lna (R-F-Clna) Crystal Structure, PDB code: 4hqh:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 4hqh

Go back to Fluorine Binding Sites List in 4hqh
Fluorine binding site 1 out of 2 in the Decamer Fluoro Carbocyclic Lna (R-F-Clna) Crystal Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Decamer Fluoro Carbocyclic Lna (R-F-Clna) Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F6

b:22.7
occ:1.00
F7' A:ULF6 0.0 22.7 1.0
C6' A:ULF6 1.4 19.7 1.0
C8' A:ULF6 2.3 21.8 1.0
C2' A:ULF6 2.4 20.2 1.0
C1' A:ULF6 2.8 17.9 1.0
C4' A:ULF6 3.3 20.9 1.0
O4' A:ULF6 3.3 19.4 1.0
O A:HOH133 3.4 31.3 1.0
C3' A:ULF6 3.5 21.5 1.0
O3' A:ULF6 4.0 24.0 1.0
O2 A:ULF6 4.1 14.8 1.0
N1 A:ULF6 4.2 17.2 1.0
O4' A:DA7 4.4 16.9 1.0
C2 A:ULF6 4.6 15.3 1.0
C5' A:ULF6 4.6 22.0 1.0
O A:HOH121 4.8 24.8 1.0

Fluorine binding site 2 out of 2 in 4hqh

Go back to Fluorine Binding Sites List in 4hqh
Fluorine binding site 2 out of 2 in the Decamer Fluoro Carbocyclic Lna (R-F-Clna) Crystal Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Decamer Fluoro Carbocyclic Lna (R-F-Clna) Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F16

b:18.4
occ:1.00
F7' B:ULF16 0.0 18.4 1.0
C6' B:ULF16 1.4 18.4 1.0
C2' B:ULF16 2.3 16.6 1.0
C8' B:ULF16 2.4 16.9 1.0
C1' B:ULF16 2.6 16.1 1.0
O B:HOH121 3.2 28.7 1.0
O4' B:ULF16 3.2 16.9 1.0
C4' B:ULF16 3.3 17.0 1.0
C3' B:ULF16 3.5 16.4 1.0
O B:HOH111 3.5 26.5 1.0
O2 B:ULF16 3.9 15.5 1.0
N1 B:ULF16 4.0 14.3 1.0
O3' B:ULF16 4.1 19.0 1.0
O4' B:DA17 4.4 16.8 1.0
C2 B:ULF16 4.4 14.6 1.0
C5' B:ULF16 4.7 20.0 1.0
C5' B:DA17 5.0 18.3 1.0

Reference:

P.P.Seth, P.S.Pallan, E.E.Swayze, M.Egli. Properties of A Fluorinated Carbocyclic Lna Analog To Be Published.
Page generated: Sun Dec 13 12:03:52 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy