Fluorine in PDB 4hy6: Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1
Protein crystallography data
The structure of Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1, PDB code: 4hy6
was solved by
M.Yang,
J.Li,
J.H.He,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
33.53 /
1.65
|
Space group
|
I 2 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
67.061,
91.034,
99.177,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20 /
21.6
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1
(pdb code 4hy6). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1, PDB code: 4hy6:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 4hy6
Go back to
Fluorine Binding Sites List in 4hy6
Fluorine binding site 1 out
of 3 in the Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:27.2
occ:1.00
|
F14
|
A:FJ1501
|
0.0
|
27.2
|
1.0
|
C13
|
A:FJ1501
|
1.3
|
26.0
|
1.0
|
F16
|
A:FJ1501
|
2.2
|
31.7
|
1.0
|
F15
|
A:FJ1501
|
2.2
|
29.9
|
1.0
|
C09
|
A:FJ1501
|
2.3
|
20.3
|
1.0
|
C05
|
A:FJ1501
|
3.2
|
20.3
|
1.0
|
N08
|
A:FJ1501
|
3.3
|
21.7
|
1.0
|
O12
|
A:FJ1501
|
3.4
|
24.6
|
1.0
|
CE2
|
A:TYR139
|
3.4
|
20.2
|
1.0
|
C04
|
A:FJ1501
|
3.7
|
21.3
|
1.0
|
CD2
|
A:TYR139
|
3.7
|
16.9
|
1.0
|
O
|
A:HOH624
|
3.8
|
19.2
|
1.0
|
CA
|
A:VAL136
|
3.8
|
17.8
|
1.0
|
CB
|
A:ALA111
|
3.9
|
29.9
|
1.0
|
O
|
A:GLY135
|
3.9
|
21.3
|
1.0
|
CG1
|
A:VAL136
|
4.0
|
21.1
|
1.0
|
CB
|
A:VAL136
|
4.1
|
17.7
|
1.0
|
C06
|
A:FJ1501
|
4.3
|
20.0
|
1.0
|
CB
|
A:PHE138
|
4.3
|
15.2
|
1.0
|
N07
|
A:FJ1501
|
4.3
|
22.1
|
1.0
|
C
|
A:VAL136
|
4.4
|
16.5
|
1.0
|
O
|
A:VAL136
|
4.6
|
16.8
|
1.0
|
CZ
|
A:TYR139
|
4.6
|
19.5
|
1.0
|
C
|
A:GLY135
|
4.8
|
19.2
|
1.0
|
N
|
A:VAL136
|
4.8
|
19.2
|
1.0
|
CD2
|
A:PHE138
|
5.0
|
16.1
|
1.0
|
N
|
A:PHE138
|
5.0
|
15.0
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 4hy6
Go back to
Fluorine Binding Sites List in 4hy6
Fluorine binding site 2 out
of 3 in the Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:29.9
occ:1.00
|
F15
|
A:FJ1501
|
0.0
|
29.9
|
1.0
|
C13
|
A:FJ1501
|
1.3
|
26.0
|
1.0
|
F16
|
A:FJ1501
|
2.2
|
31.7
|
1.0
|
F14
|
A:FJ1501
|
2.2
|
27.2
|
1.0
|
C09
|
A:FJ1501
|
2.3
|
20.3
|
1.0
|
O12
|
A:FJ1501
|
3.0
|
24.6
|
1.0
|
O
|
A:LEU107
|
3.0
|
25.0
|
1.0
|
C05
|
A:FJ1501
|
3.1
|
20.3
|
1.0
|
CB
|
A:ALA111
|
3.4
|
29.9
|
1.0
|
N08
|
A:FJ1501
|
3.4
|
21.7
|
1.0
|
C04
|
A:FJ1501
|
3.5
|
21.3
|
1.0
|
C
|
A:LEU107
|
3.6
|
21.4
|
1.0
|
CB
|
A:LEU107
|
3.7
|
22.4
|
1.0
|
CA
|
A:LEU107
|
4.1
|
21.9
|
1.0
|
C06
|
A:FJ1501
|
4.3
|
20.0
|
1.0
|
N
|
A:GLY108
|
4.4
|
21.9
|
1.0
|
N07
|
A:FJ1501
|
4.4
|
22.1
|
1.0
|
CA
|
A:ALA111
|
4.4
|
30.0
|
1.0
|
N
|
A:ALA111
|
4.6
|
28.9
|
1.0
|
O
|
A:GLY135
|
4.7
|
21.3
|
1.0
|
CG
|
A:LEU107
|
4.7
|
24.6
|
1.0
|
CA
|
A:GLY108
|
4.8
|
24.4
|
1.0
|
CE2
|
A:TYR139
|
4.8
|
20.2
|
1.0
|
CD2
|
A:LEU107
|
4.9
|
28.4
|
1.0
|
C01
|
A:FJ1501
|
4.9
|
18.2
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 4hy6
Go back to
Fluorine Binding Sites List in 4hy6
Fluorine binding site 3 out
of 3 in the Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:31.7
occ:1.00
|
F16
|
A:FJ1501
|
0.0
|
31.7
|
1.0
|
C13
|
A:FJ1501
|
1.3
|
26.0
|
1.0
|
F14
|
A:FJ1501
|
2.2
|
27.2
|
1.0
|
F15
|
A:FJ1501
|
2.2
|
29.9
|
1.0
|
C09
|
A:FJ1501
|
2.3
|
20.3
|
1.0
|
N08
|
A:FJ1501
|
2.6
|
21.7
|
1.0
|
O
|
A:GLY135
|
2.9
|
21.3
|
1.0
|
O
|
A:HOH624
|
3.2
|
19.2
|
1.0
|
C05
|
A:FJ1501
|
3.7
|
20.3
|
1.0
|
N07
|
A:FJ1501
|
3.9
|
22.1
|
1.0
|
C
|
A:GLY135
|
4.1
|
19.2
|
1.0
|
CA
|
A:VAL136
|
4.3
|
17.8
|
1.0
|
C06
|
A:FJ1501
|
4.5
|
20.0
|
1.0
|
CB
|
A:ALA111
|
4.6
|
29.9
|
1.0
|
N
|
A:VAL136
|
4.7
|
19.2
|
1.0
|
O12
|
A:FJ1501
|
4.7
|
24.6
|
1.0
|
C04
|
A:FJ1501
|
4.7
|
21.3
|
1.0
|
CG1
|
A:VAL136
|
4.8
|
21.1
|
1.0
|
O
|
A:LEU107
|
4.8
|
25.0
|
1.0
|
|
Reference:
M.Yang,
J.Li,
J.H.He.
Crystal Structure of the Human HSP90-Alpha N-Domain Bound to the HSP90 Inhibitor FJ1 To Be Published.
Page generated: Thu Aug 1 02:14:12 2024
|