Atomistry » Fluorine » PDB 4hxn-4ijh » 4iae
Atomistry »
  Fluorine »
    PDB 4hxn-4ijh »
      4iae »

Fluorine in PDB 4iae: Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain

Enzymatic activity of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain

All present enzymatic activity of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain:
4.6.1.2;

Protein crystallography data

The structure of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain, PDB code: 4iae was solved by V.Kumar, F.Van Den Akker, F.Martin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 86.20 / 2.05
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 121.913, 121.913, 121.913, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 19.5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain (pdb code 4iae). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain, PDB code: 4iae:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 4iae

Go back to Fluorine Binding Sites List in 4iae
Fluorine binding site 1 out of 8 in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:29.9
occ:1.00
 FAA A:1DX201 0.0 29.9 1.0
CAC A:1DX201 1.3 33.8 1.0
CAB A:1DX201 2.4 29.7 1.0
CAD A:1DX201 2.4 31.4 1.0
CB A:LEU148 3.5 25.9 1.0
CD2 A:LEU101 3.6 30.0 1.0
CAE A:1DX201 3.6 28.7 1.0
CBN A:1DX201 3.7 37.1 1.0
SD A:MET98 3.8 32.1 1.0
CD1 A:LEU152 3.8 25.3 1.0
CE A:MET98 4.0 31.1 1.0
CBO A:1DX201 4.1 35.3 1.0
CD1 A:LEU148 4.2 27.3 1.0
CG A:LEU148 4.3 24.2 1.0
C A:LEU148 4.5 26.6 1.0
CD2 A:LEU148 4.6 27.0 1.0
CG A:LEU152 4.6 26.2 1.0
CA A:LEU148 4.6 23.7 1.0
N A:LEU149 4.7 26.1 1.0
CE2 A:PHE97 4.7 28.1 1.0
O A:LEU148 4.8 24.1 1.0
CZ A:PHE120 4.9 27.1 1.0
CBA A:1DX201 4.9 27.2 1.0

Fluorine binding site 2 out of 8 in 4iae

Go back to Fluorine Binding Sites List in 4iae
Fluorine binding site 2 out of 8 in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:36.0
occ:1.00
 FAE A:1DX201 0.0 36.0 1.0
CAI A:1DX201 1.3 36.9 1.0
FAK A:1DX201 2.1 35.4 1.0
FAJ A:1DX201 2.1 37.0 1.0
CAH A:1DX201 2.3 36.4 1.0
CZD A:1DX201 3.0 35.5 1.0
O A:GLY39 3.1 27.1 1.0
CB A:TYR2 3.1 24.8 1.0
CAG A:1DX201 3.3 32.0 1.0
CG A:TYR2 3.5 28.1 1.0
CD2 A:TYR2 3.9 27.1 1.0
CB A:LEU4 3.9 19.6 1.0
C A:GLY39 4.1 27.2 1.0
CA A:MET40 4.2 26.5 1.0
CD1 A:TYR2 4.2 35.8 1.0
CAK A:1DX201 4.3 38.2 1.0
CD2 A:LEU4 4.3 26.5 1.0
CAJ A:1DX201 4.5 33.7 1.0
CA A:TYR2 4.5 25.5 1.0
N A:MET40 4.6 26.2 1.0
CG A:MET40 4.6 26.0 1.0
N A:LEU4 4.6 26.1 1.0
O A:HOH321 4.6 51.4 1.0
CB A:MET40 4.8 28.2 1.0
CG A:LEU4 4.8 25.7 1.0
C A:TYR2 4.8 28.7 1.0
OH A:TYR83 4.8 34.4 1.0
CE2 A:TYR2 4.8 34.9 1.0
CBI A:1DX201 4.9 29.3 1.0
CA A:LEU4 5.0 25.4 1.0

Fluorine binding site 3 out of 8 in 4iae

Go back to Fluorine Binding Sites List in 4iae
Fluorine binding site 3 out of 8 in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:37.0
occ:1.00
 FAJ A:1DX201 0.0 37.0 1.0
CAI A:1DX201 1.3 36.9 1.0
FAE A:1DX201 2.1 36.0 1.0
FAK A:1DX201 2.2 35.4 1.0
CAH A:1DX201 2.3 36.4 1.0
CZD A:1DX201 2.7 35.5 1.0
CG A:PHE112 3.3 43.4 1.0
CD2 A:PHE112 3.3 44.0 1.0
CG A:TYR2 3.4 28.1 1.0
CD1 A:TYR2 3.5 35.8 1.0
CAG A:1DX201 3.5 32.0 1.0
CD1 A:PHE112 3.7 46.2 1.0
CB A:PHE112 3.7 50.3 1.0
CE2 A:PHE112 3.8 52.2 1.0
CD2 A:TYR2 3.8 27.1 1.0
CB A:TYR2 3.9 24.8 1.0
CE1 A:TYR2 3.9 43.2 1.0
CAK A:1DX201 4.1 38.2 1.0
CE1 A:PHE112 4.1 45.5 1.0
CZ A:PHE112 4.2 49.3 1.0
CG1 A:VAL108 4.2 35.8 1.0
CE2 A:TYR2 4.2 34.9 1.0
CZ A:TYR2 4.3 42.6 1.0
CD1 A:LEU115 4.5 31.2 1.0
CAJ A:1DX201 4.6 33.7 1.0
CBI A:1DX201 4.9 29.3 1.0
O A:GLY39 4.9 27.1 1.0
CA A:MET40 5.0 26.5 1.0

Fluorine binding site 4 out of 8 in 4iae

Go back to Fluorine Binding Sites List in 4iae
Fluorine binding site 4 out of 8 in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:35.4
occ:1.00
 FAK A:1DX201 0.0 35.4 1.0
CAI A:1DX201 1.3 36.9 1.0
FAE A:1DX201 2.1 36.0 1.0
FAJ A:1DX201 2.2 37.0 1.0
CAH A:1DX201 2.3 36.4 1.0
CAG A:1DX201 2.8 32.0 1.0
CZ A:PHE112 3.3 49.3 1.0
CE2 A:PHE112 3.3 52.2 1.0
OH A:TYR83 3.4 34.4 1.0
CZD A:1DX201 3.6 35.5 1.0
CE1 A:PHE112 3.7 45.5 1.0
CD2 A:PHE112 3.7 44.0 1.0
CG A:MET40 3.8 26.0 1.0
CD1 A:PHE112 4.0 46.2 1.0
CG A:PHE112 4.1 43.4 1.0
O A:HOH321 4.1 51.4 1.0
CAJ A:1DX201 4.2 33.7 1.0
O A:GLY39 4.4 27.1 1.0
CB A:MET40 4.4 28.2 1.0
CZ A:TYR83 4.4 32.5 1.0
CA A:MET40 4.5 26.5 1.0
CE A:MET40 4.6 33.1 1.0
CAK A:1DX201 4.7 38.2 1.0
SD A:MET40 4.8 31.3 1.0
CD2 A:LEU4 4.9 26.5 1.0
CE1 A:TYR83 5.0 26.6 1.0
CBI A:1DX201 5.0 29.3 1.0

Fluorine binding site 5 out of 8 in 4iae

Go back to Fluorine Binding Sites List in 4iae
Fluorine binding site 5 out of 8 in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F201

b:27.0
occ:1.00
 FAA B:1DX201 0.0 27.0 1.0
CAC B:1DX201 1.3 34.6 1.0
CAB B:1DX201 2.4 26.4 1.0
CAD B:1DX201 2.4 26.6 1.0
CAE B:1DX201 3.6 24.2 1.0
CB B:LEU148 3.6 21.9 1.0
CD1 B:LEU101 3.6 29.3 1.0
CBN B:1DX201 3.7 25.9 1.0
CD1 B:LEU152 3.8 24.1 1.0
SD B:MET98 3.9 24.7 1.0
CE B:MET98 4.0 23.2 1.0
CBO B:1DX201 4.1 24.1 1.0
CG B:LEU148 4.3 20.1 1.0
CD1 B:LEU148 4.4 23.5 1.0
CG B:LEU152 4.6 23.2 1.0
CE2 B:PHE97 4.6 20.3 1.0
C B:LEU148 4.6 22.7 1.0
CD2 B:LEU148 4.6 19.9 1.0
CG B:LEU101 4.7 31.2 1.0
CA B:LEU148 4.8 22.5 1.0
O B:LEU148 4.8 24.1 1.0
N B:LEU149 4.8 20.8 1.0
CZ B:PHE120 4.9 23.2 1.0
CBA B:1DX201 4.9 23.8 1.0
CD2 B:LEU149 4.9 22.2 1.0

Fluorine binding site 6 out of 8 in 4iae

Go back to Fluorine Binding Sites List in 4iae
Fluorine binding site 6 out of 8 in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F201

b:38.7
occ:1.00
 FAE B:1DX201 0.0 38.7 1.0
CAI B:1DX201 1.3 40.3 1.0
FAK B:1DX201 2.1 40.5 1.0
FAJ B:1DX201 2.1 39.4 1.0
CAH B:1DX201 2.3 33.9 1.0
CZD B:1DX201 3.0 36.9 1.0
O B:GLY39 3.1 24.1 1.0
CB B:TYR2 3.2 26.6 1.0
CAG B:1DX201 3.3 30.9 1.0
CG B:TYR2 3.5 26.4 1.0
CD2 B:TYR2 3.7 31.6 1.0
CB B:LEU4 3.8 27.6 1.0
C B:GLY39 4.1 28.5 1.0
O B:HOH350 4.1 42.4 1.0
CD1 B:TYR2 4.2 29.0 1.0
CA B:MET40 4.2 26.2 1.0
CD2 B:LEU4 4.2 28.1 1.0
CAK B:1DX201 4.3 29.7 1.0
CAJ B:1DX201 4.5 30.1 1.0
N B:LEU4 4.5 26.6 1.0
CA B:TYR2 4.6 27.8 1.0
CG B:LEU4 4.6 30.2 1.0
CE2 B:TYR2 4.6 27.4 1.0
N B:MET40 4.6 24.6 1.0
CG B:MET40 4.7 30.5 1.0
OH B:TYR83 4.7 26.9 1.0
CA B:LEU4 4.8 27.3 1.0
C B:TYR2 4.9 29.9 1.0
CBI B:1DX201 4.9 33.2 1.0
CB B:MET40 5.0 28.5 1.0

Fluorine binding site 7 out of 8 in 4iae

Go back to Fluorine Binding Sites List in 4iae
Fluorine binding site 7 out of 8 in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F201

b:39.4
occ:1.00
 FAJ B:1DX201 0.0 39.4 1.0
CAI B:1DX201 1.3 40.3 1.0
FAE B:1DX201 2.1 38.7 1.0
FAK B:1DX201 2.2 40.5 1.0
CAH B:1DX201 2.3 33.9 1.0
CZD B:1DX201 2.8 36.9 1.0
CD1 B:PHE112 3.3 51.2 1.0
CG B:TYR2 3.4 26.4 1.0
CG B:PHE112 3.4 53.4 1.0
CAG B:1DX201 3.4 30.9 1.0
CD1 B:TYR2 3.5 29.0 1.0
CD2 B:TYR2 3.6 31.6 1.0
CE1 B:PHE112 3.7 57.1 1.0
CE1 B:TYR2 3.9 41.4 1.0
CD2 B:PHE112 3.9 44.1 1.0
CB B:PHE112 3.9 53.8 1.0
CE2 B:TYR2 3.9 27.4 1.0
CB B:TYR2 3.9 26.6 1.0
CZ B:TYR2 4.1 37.8 1.0
CZ B:PHE112 4.2 52.8 1.0
CAK B:1DX201 4.2 29.7 1.0
CE2 B:PHE112 4.2 52.5 1.0
CG1 B:VAL108 4.4 31.5 1.0
CAJ B:1DX201 4.6 30.1 1.0
CD1 B:LEU115 4.7 22.4 1.0
O B:GLY39 4.8 24.1 1.0
CBI B:1DX201 4.9 33.2 1.0
OH B:TYR2 5.0 37.1 1.0
CA B:MET40 5.0 26.2 1.0

Fluorine binding site 8 out of 8 in 4iae

Go back to Fluorine Binding Sites List in 4iae
Fluorine binding site 8 out of 8 in the Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of Bay 60-2770 Bound to Nostoc H-Nox Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F201

b:40.5
occ:1.00
 FAK B:1DX201 0.0 40.5 1.0
CAI B:1DX201 1.3 40.3 1.0
FAE B:1DX201 2.1 38.7 1.0
FAJ B:1DX201 2.2 39.4 1.0
CAH B:1DX201 2.3 33.9 1.0
CAG B:1DX201 2.7 30.9 1.0
OH B:TYR83 3.2 26.9 1.0
CE1 B:PHE112 3.3 57.1 1.0
CZ B:PHE112 3.5 52.8 1.0
O B:HOH350 3.5 42.4 1.0
CZD B:1DX201 3.6 36.9 1.0
CD1 B:PHE112 3.7 51.2 1.0
CG B:MET40 3.8 30.5 1.0
CE2 B:PHE112 4.0 52.5 1.0
CAJ B:1DX201 4.0 30.1 1.0
CZ B:TYR83 4.2 27.9 1.0
CG B:PHE112 4.3 53.4 1.0
O B:GLY39 4.4 24.1 1.0
CD2 B:PHE112 4.4 44.1 1.0
CA B:MET40 4.5 26.2 1.0
CB B:MET40 4.6 28.5 1.0
CE B:MET40 4.7 32.3 1.0
CAK B:1DX201 4.7 29.7 1.0
CD2 B:LEU4 4.7 28.1 1.0
CE1 B:TYR83 4.9 22.8 1.0
CBI B:1DX201 4.9 33.2 1.0
CE2 B:TYR83 5.0 24.7 1.0
CD2 B:TYR2 5.0 31.6 1.0

Reference:

V.Kumar, F.Martin, M.G.Hahn, M.Schaefer, J.S.Stamler, J.P.Stasch, F.Van Den Akker. Insights Into Bay 60-2770 Activation and S-Nitrosylation-Dependent Desensitization of Soluble Guanylyl Cyclase Via Crystal Structures of Homologous Nostoc H-Nox Domain Complexes. Biochemistry V. 52 3601 2013.
ISSN: ISSN 0006-2960
PubMed: 23614626
DOI: 10.1021/BI301657W
Page generated: Thu Aug 1 02:19:12 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy