Fluorine in PDB 4ido: Human Atlastin-1 1-446, C-HIS6, GDPALF4-
Protein crystallography data
The structure of Human Atlastin-1 1-446, C-HIS6, GDPALF4-, PDB code: 4ido
was solved by
L.J.Byrnes,
A.Singh,
K.Szeto,
N.M.Benvin,
J.P.O'donnell,
W.R.Zipfel,
H.Sondermann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
43.74 /
2.09
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.610,
116.430,
185.400,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
19.9 /
24.9
|
Other elements in 4ido:
The structure of Human Atlastin-1 1-446, C-HIS6, GDPALF4- also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Human Atlastin-1 1-446, C-HIS6, GDPALF4-
(pdb code 4ido). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Human Atlastin-1 1-446, C-HIS6, GDPALF4-, PDB code: 4ido:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 4ido
Go back to
Fluorine Binding Sites List in 4ido
Fluorine binding site 1 out
of 8 in the Human Atlastin-1 1-446, C-HIS6, GDPALF4-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Human Atlastin-1 1-446, C-HIS6, GDPALF4- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:22.9
occ:1.00
|
F1
|
A:ALF502
|
0.0
|
22.9
|
1.0
|
|
AL
|
A:ALF502
|
1.8
|
20.3
|
1.0
|
|
F4
|
A:ALF502
|
2.5
|
17.7
|
1.0
|
|
N
|
A:GLU119
|
2.5
|
16.0
|
1.0
|
|
F3
|
A:ALF502
|
2.5
|
17.6
|
1.0
|
|
O3B
|
A:GDP501
|
2.7
|
20.1
|
1.0
|
|
NH2
|
A:ARG77
|
2.9
|
16.2
|
1.0
|
|
O
|
A:HOH697
|
2.9
|
12.8
|
1.0
|
|
N
|
A:THR120
|
3.0
|
13.1
|
1.0
|
|
O
|
A:HOH601
|
3.2
|
14.9
|
1.0
|
|
CA
|
A:GLU119
|
3.2
|
21.8
|
1.0
|
|
CB
|
A:GLU119
|
3.3
|
16.9
|
1.0
|
|
C
|
A:GLU119
|
3.6
|
16.0
|
1.0
|
|
F2
|
A:ALF502
|
3.6
|
14.8
|
1.0
|
|
C
|
A:ARG118
|
3.6
|
21.7
|
1.0
|
|
NE
|
A:ARG77
|
3.6
|
15.0
|
1.0
|
|
CZ
|
A:ARG77
|
3.6
|
13.3
|
1.0
|
|
MG
|
A:MG503
|
3.7
|
14.1
|
1.0
|
|
CA
|
A:ARG118
|
3.8
|
23.1
|
1.0
|
|
PB
|
A:GDP501
|
3.9
|
14.6
|
1.0
|
|
O1B
|
A:GDP501
|
4.1
|
11.2
|
1.0
|
|
OG1
|
A:THR120
|
4.1
|
18.2
|
1.0
|
|
CA
|
A:THR120
|
4.1
|
20.9
|
1.0
|
|
CB
|
A:THR120
|
4.3
|
18.5
|
1.0
|
|
CB
|
A:ARG118
|
4.3
|
19.9
|
1.0
|
|
O
|
A:THR120
|
4.4
|
24.3
|
1.0
|
|
CG
|
A:GLU119
|
4.5
|
15.3
|
1.0
|
|
O2A
|
A:GDP501
|
4.5
|
14.2
|
1.0
|
|
O3A
|
A:GDP501
|
4.7
|
13.9
|
1.0
|
|
O
|
A:ARG118
|
4.7
|
17.0
|
1.0
|
|
O
|
A:GLU119
|
4.7
|
15.5
|
1.0
|
|
C
|
A:THR120
|
4.8
|
20.9
|
1.0
|
|
N
|
A:ARG77
|
4.9
|
12.5
|
1.0
|
|
NH1
|
A:ARG77
|
4.9
|
15.7
|
1.0
|
|
CD
|
A:ARG77
|
4.9
|
17.6
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 4ido
Go back to
Fluorine Binding Sites List in 4ido
Fluorine binding site 2 out
of 8 in the Human Atlastin-1 1-446, C-HIS6, GDPALF4-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Human Atlastin-1 1-446, C-HIS6, GDPALF4- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:14.8
occ:1.00
|
F2
|
A:ALF502
|
0.0
|
14.8
|
1.0
|
|
AL
|
A:ALF502
|
1.8
|
20.3
|
1.0
|
|
F3
|
A:ALF502
|
2.5
|
17.6
|
1.0
|
|
F4
|
A:ALF502
|
2.6
|
17.7
|
1.0
|
|
NZ
|
A:LYS80
|
2.6
|
8.8
|
1.0
|
|
O3B
|
A:GDP501
|
2.7
|
20.1
|
1.0
|
|
O
|
A:HOH697
|
2.8
|
12.8
|
1.0
|
|
N
|
A:GLY149
|
2.9
|
19.1
|
1.0
|
|
CA
|
A:GLY149
|
3.0
|
8.8
|
1.0
|
|
CA
|
A:PHE76
|
3.2
|
19.8
|
1.0
|
|
CB
|
A:PHE76
|
3.5
|
15.2
|
1.0
|
|
N
|
A:ARG77
|
3.5
|
12.5
|
1.0
|
|
PB
|
A:GDP501
|
3.6
|
14.6
|
1.0
|
|
O2B
|
A:GDP501
|
3.6
|
17.1
|
1.0
|
|
F1
|
A:ALF502
|
3.6
|
22.9
|
1.0
|
|
CE
|
A:LYS80
|
3.6
|
16.1
|
1.0
|
|
C
|
A:PHE76
|
3.9
|
12.1
|
1.0
|
|
O1B
|
A:GDP501
|
4.0
|
11.2
|
1.0
|
|
O
|
A:HOH625
|
4.0
|
9.9
|
1.0
|
|
C
|
A:GLN148
|
4.2
|
20.9
|
1.0
|
|
MG
|
A:MG503
|
4.2
|
14.1
|
1.0
|
|
C
|
A:GLY149
|
4.3
|
10.3
|
1.0
|
|
N
|
A:PHE76
|
4.3
|
13.6
|
1.0
|
|
O
|
A:HOH920
|
4.3
|
10.3
|
1.0
|
|
O
|
A:THR147
|
4.4
|
15.5
|
1.0
|
|
O
|
A:ALA75
|
4.4
|
13.9
|
1.0
|
|
C
|
A:ALA75
|
4.7
|
14.9
|
1.0
|
|
O
|
A:GLY149
|
4.7
|
10.8
|
1.0
|
|
CA
|
A:ARG77
|
4.7
|
14.3
|
1.0
|
|
CA
|
A:GLN148
|
4.8
|
22.8
|
1.0
|
|
CG
|
A:PHE76
|
4.8
|
17.0
|
1.0
|
|
O3A
|
A:GDP501
|
5.0
|
13.9
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 4ido
Go back to
Fluorine Binding Sites List in 4ido
Fluorine binding site 3 out
of 8 in the Human Atlastin-1 1-446, C-HIS6, GDPALF4-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Human Atlastin-1 1-446, C-HIS6, GDPALF4- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:17.6
occ:1.00
|
F3
|
A:ALF502
|
0.0
|
17.6
|
1.0
|
|
AL
|
A:ALF502
|
1.8
|
20.3
|
1.0
|
|
MG
|
A:MG503
|
2.0
|
14.1
|
1.0
|
|
F2
|
A:ALF502
|
2.5
|
14.8
|
1.0
|
|
F1
|
A:ALF502
|
2.5
|
22.9
|
1.0
|
|
O3B
|
A:GDP501
|
2.7
|
20.1
|
1.0
|
|
O1B
|
A:GDP501
|
2.8
|
11.2
|
1.0
|
|
O
|
A:HOH920
|
2.8
|
10.3
|
1.0
|
|
OG1
|
A:THR120
|
2.9
|
18.2
|
1.0
|
|
O
|
A:HOH697
|
3.0
|
12.8
|
1.0
|
|
CB
|
A:THR120
|
3.0
|
18.5
|
1.0
|
|
O
|
A:HOH601
|
3.1
|
14.9
|
1.0
|
|
PB
|
A:GDP501
|
3.3
|
14.6
|
1.0
|
|
F4
|
A:ALF502
|
3.5
|
17.7
|
1.0
|
|
N
|
A:THR120
|
3.6
|
13.1
|
1.0
|
|
O
|
A:THR147
|
3.8
|
15.5
|
1.0
|
|
CA
|
A:THR120
|
3.8
|
20.9
|
1.0
|
|
NZ
|
A:LYS80
|
4.0
|
8.8
|
1.0
|
|
O2B
|
A:GDP501
|
4.0
|
17.1
|
1.0
|
|
N
|
A:GLY149
|
4.1
|
19.1
|
1.0
|
|
OG
|
A:SER81
|
4.1
|
13.0
|
1.0
|
|
O
|
A:THR120
|
4.2
|
24.3
|
1.0
|
|
CG2
|
A:THR120
|
4.3
|
15.1
|
1.0
|
|
C
|
A:THR120
|
4.5
|
20.9
|
1.0
|
|
CE
|
A:LYS80
|
4.5
|
16.1
|
1.0
|
|
O3A
|
A:GDP501
|
4.7
|
13.9
|
1.0
|
|
C
|
A:GLU119
|
4.7
|
16.0
|
1.0
|
|
CA
|
A:GLN148
|
4.7
|
22.8
|
1.0
|
|
NH2
|
A:ARG77
|
4.7
|
16.2
|
1.0
|
|
N
|
A:GLU119
|
4.8
|
16.0
|
1.0
|
|
C
|
A:THR147
|
4.8
|
15.7
|
1.0
|
|
C
|
A:GLN148
|
4.9
|
20.9
|
1.0
|
|
CA
|
A:GLY149
|
4.9
|
8.8
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 4ido
Go back to
Fluorine Binding Sites List in 4ido
Fluorine binding site 4 out
of 8 in the Human Atlastin-1 1-446, C-HIS6, GDPALF4-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Human Atlastin-1 1-446, C-HIS6, GDPALF4- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:17.7
occ:1.00
|
F4
|
A:ALF502
|
0.0
|
17.7
|
1.0
|
|
AL
|
A:ALF502
|
1.8
|
20.3
|
1.0
|
|
F1
|
A:ALF502
|
2.5
|
22.9
|
1.0
|
|
F2
|
A:ALF502
|
2.6
|
14.8
|
1.0
|
|
O3B
|
A:GDP501
|
2.7
|
20.1
|
1.0
|
|
O
|
A:HOH697
|
2.8
|
12.8
|
1.0
|
|
N
|
A:ARG77
|
2.8
|
12.5
|
1.0
|
|
NE
|
A:ARG77
|
2.9
|
15.0
|
1.0
|
|
CB
|
A:PHE76
|
3.3
|
15.2
|
1.0
|
|
CD2
|
A:PHE76
|
3.5
|
17.8
|
1.0
|
|
F3
|
A:ALF502
|
3.5
|
17.6
|
1.0
|
|
CA
|
A:ARG118
|
3.6
|
23.1
|
1.0
|
|
CA
|
A:PHE76
|
3.6
|
19.8
|
1.0
|
|
C
|
A:PHE76
|
3.6
|
12.1
|
1.0
|
|
CA
|
A:ARG77
|
3.7
|
14.3
|
1.0
|
|
NH2
|
A:ARG77
|
3.7
|
16.2
|
1.0
|
|
CB
|
A:ARG118
|
3.8
|
19.9
|
1.0
|
|
CZ
|
A:ARG77
|
3.8
|
13.3
|
1.0
|
|
CD
|
A:ARG77
|
3.8
|
17.6
|
1.0
|
|
CG
|
A:ARG77
|
3.8
|
29.4
|
1.0
|
|
CG
|
A:PHE76
|
3.9
|
17.0
|
1.0
|
|
O
|
A:HOH625
|
3.9
|
9.9
|
1.0
|
|
N
|
A:GLU119
|
4.0
|
16.0
|
1.0
|
|
PB
|
A:GDP501
|
4.1
|
14.6
|
1.0
|
|
CB
|
A:ARG77
|
4.3
|
18.2
|
1.0
|
|
C
|
A:ARG118
|
4.3
|
21.7
|
1.0
|
|
N
|
A:ARG118
|
4.6
|
18.6
|
1.0
|
|
O2B
|
A:GDP501
|
4.7
|
17.1
|
1.0
|
|
CE2
|
A:PHE76
|
4.7
|
23.9
|
1.0
|
|
O
|
A:PHE76
|
4.8
|
15.2
|
1.0
|
|
N
|
A:GLY149
|
4.8
|
19.1
|
1.0
|
|
NZ
|
A:LYS80
|
4.9
|
8.8
|
1.0
|
|
CA
|
A:GLY149
|
4.9
|
8.8
|
1.0
|
|
O1B
|
A:GDP501
|
4.9
|
11.2
|
1.0
|
|
O3A
|
A:GDP501
|
5.0
|
13.9
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 4ido
Go back to
Fluorine Binding Sites List in 4ido
Fluorine binding site 5 out
of 8 in the Human Atlastin-1 1-446, C-HIS6, GDPALF4-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Human Atlastin-1 1-446, C-HIS6, GDPALF4- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F502
b:20.4
occ:1.00
|
F1
|
B:ALF502
|
0.0
|
20.4
|
1.0
|
|
AL
|
B:ALF502
|
1.8
|
17.7
|
1.0
|
|
F4
|
B:ALF502
|
2.5
|
21.4
|
1.0
|
|
F3
|
B:ALF502
|
2.5
|
21.2
|
1.0
|
|
O3B
|
B:GDP501
|
2.6
|
10.6
|
1.0
|
|
N
|
B:ARG77
|
2.8
|
15.0
|
1.0
|
|
NE
|
B:ARG77
|
2.8
|
22.8
|
1.0
|
|
O
|
B:HOH789
|
2.9
|
12.2
|
1.0
|
|
CB
|
B:PHE76
|
3.4
|
21.4
|
1.0
|
|
CA
|
B:ARG77
|
3.5
|
16.7
|
1.0
|
|
CA
|
B:ARG118
|
3.5
|
23.0
|
1.0
|
|
F2
|
B:ALF502
|
3.6
|
22.8
|
1.0
|
|
NH2
|
B:ARG77
|
3.6
|
16.3
|
1.0
|
|
CD2
|
B:PHE76
|
3.7
|
22.0
|
1.0
|
|
CZ
|
B:ARG77
|
3.7
|
20.4
|
1.0
|
|
C
|
B:PHE76
|
3.7
|
19.8
|
1.0
|
|
CD
|
B:ARG77
|
3.7
|
16.1
|
1.0
|
|
CA
|
B:PHE76
|
3.7
|
16.9
|
1.0
|
|
CG
|
B:ARG77
|
3.7
|
31.6
|
1.0
|
|
CB
|
B:ARG118
|
3.8
|
25.9
|
1.0
|
|
N
|
B:GLU119
|
3.9
|
23.3
|
1.0
|
|
CG
|
B:PHE76
|
3.9
|
18.6
|
1.0
|
|
PB
|
B:GDP501
|
4.1
|
16.4
|
1.0
|
|
O
|
B:HOH911
|
4.1
|
14.5
|
1.0
|
|
CB
|
B:ARG77
|
4.2
|
15.8
|
1.0
|
|
C
|
B:ARG118
|
4.3
|
21.1
|
1.0
|
|
N
|
B:ARG118
|
4.5
|
19.0
|
1.0
|
|
O1B
|
B:GDP501
|
4.6
|
27.4
|
1.0
|
|
O
|
B:PHE76
|
4.8
|
12.4
|
1.0
|
|
O2B
|
B:GDP501
|
4.8
|
13.8
|
1.0
|
|
CE2
|
B:PHE76
|
4.8
|
17.6
|
1.0
|
|
C
|
B:ARG77
|
4.8
|
13.0
|
1.0
|
|
O3A
|
B:GDP501
|
4.9
|
19.4
|
1.0
|
|
NH1
|
B:ARG77
|
4.9
|
21.7
|
1.0
|
|
NZ
|
B:LYS80
|
5.0
|
11.2
|
1.0
|
|
O
|
B:GLU117
|
5.0
|
21.2
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 4ido
Go back to
Fluorine Binding Sites List in 4ido
Fluorine binding site 6 out
of 8 in the Human Atlastin-1 1-446, C-HIS6, GDPALF4-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Human Atlastin-1 1-446, C-HIS6, GDPALF4- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F502
b:22.8
occ:1.00
|
F2
|
B:ALF502
|
0.0
|
22.8
|
1.0
|
|
AL
|
B:ALF502
|
1.8
|
17.7
|
1.0
|
|
MG
|
B:MG503
|
2.1
|
17.5
|
1.0
|
|
F3
|
B:ALF502
|
2.5
|
21.2
|
1.0
|
|
F4
|
B:ALF502
|
2.5
|
21.4
|
1.0
|
|
O
|
B:HOH789
|
2.7
|
12.2
|
1.0
|
|
O3B
|
B:GDP501
|
2.8
|
10.6
|
1.0
|
|
O2B
|
B:GDP501
|
2.8
|
13.8
|
1.0
|
|
OG1
|
B:THR120
|
2.8
|
17.8
|
1.0
|
|
O
|
B:HOH938
|
2.9
|
15.5
|
1.0
|
|
CB
|
B:THR120
|
3.0
|
21.3
|
1.0
|
|
O
|
B:HOH601
|
3.2
|
18.9
|
1.0
|
|
PB
|
B:GDP501
|
3.4
|
16.4
|
1.0
|
|
F1
|
B:ALF502
|
3.6
|
20.4
|
1.0
|
|
N
|
B:THR120
|
3.6
|
15.2
|
1.0
|
|
O
|
B:THR147
|
3.8
|
17.1
|
1.0
|
|
CA
|
B:THR120
|
3.8
|
19.1
|
1.0
|
|
O1B
|
B:GDP501
|
4.0
|
27.4
|
1.0
|
|
N
|
B:GLY149
|
4.1
|
17.7
|
1.0
|
|
O
|
B:THR120
|
4.1
|
13.8
|
1.0
|
|
CG2
|
B:THR120
|
4.2
|
18.6
|
1.0
|
|
OG
|
B:SER81
|
4.2
|
13.8
|
1.0
|
|
NZ
|
B:LYS80
|
4.2
|
11.2
|
1.0
|
|
C
|
B:THR120
|
4.4
|
23.6
|
1.0
|
|
CE
|
B:LYS80
|
4.6
|
12.7
|
1.0
|
|
CA
|
B:GLN148
|
4.7
|
27.1
|
1.0
|
|
C
|
B:GLU119
|
4.7
|
23.9
|
1.0
|
|
C
|
B:THR147
|
4.8
|
16.8
|
1.0
|
|
N
|
B:GLU119
|
4.8
|
23.3
|
1.0
|
|
O3A
|
B:GDP501
|
4.8
|
19.4
|
1.0
|
|
CA
|
B:GLY149
|
4.8
|
12.7
|
1.0
|
|
C
|
B:GLN148
|
4.8
|
20.6
|
1.0
|
|
NH2
|
B:ARG77
|
4.9
|
16.3
|
1.0
|
|
O1A
|
B:GDP501
|
4.9
|
25.6
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 4ido
Go back to
Fluorine Binding Sites List in 4ido
Fluorine binding site 7 out
of 8 in the Human Atlastin-1 1-446, C-HIS6, GDPALF4-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Human Atlastin-1 1-446, C-HIS6, GDPALF4- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F502
b:21.2
occ:1.00
|
F3
|
B:ALF502
|
0.0
|
21.2
|
1.0
|
|
AL
|
B:ALF502
|
1.8
|
17.7
|
1.0
|
|
F2
|
B:ALF502
|
2.5
|
22.8
|
1.0
|
|
F1
|
B:ALF502
|
2.5
|
20.4
|
1.0
|
|
O
|
B:HOH789
|
2.7
|
12.2
|
1.0
|
|
O3B
|
B:GDP501
|
2.7
|
10.6
|
1.0
|
|
NZ
|
B:LYS80
|
2.7
|
11.2
|
1.0
|
|
N
|
B:GLY149
|
3.0
|
17.7
|
1.0
|
|
CA
|
B:GLY149
|
3.1
|
12.7
|
1.0
|
|
CA
|
B:PHE76
|
3.2
|
16.9
|
1.0
|
|
N
|
B:ARG77
|
3.4
|
15.0
|
1.0
|
|
CB
|
B:PHE76
|
3.4
|
21.4
|
1.0
|
|
O1B
|
B:GDP501
|
3.5
|
27.4
|
1.0
|
|
PB
|
B:GDP501
|
3.6
|
16.4
|
1.0
|
|
F4
|
B:ALF502
|
3.6
|
21.4
|
1.0
|
|
CE
|
B:LYS80
|
3.7
|
12.7
|
1.0
|
|
C
|
B:PHE76
|
3.8
|
19.8
|
1.0
|
|
O
|
B:HOH911
|
3.9
|
14.5
|
1.0
|
|
O2B
|
B:GDP501
|
4.0
|
13.8
|
1.0
|
|
MG
|
B:MG503
|
4.3
|
17.5
|
1.0
|
|
C
|
B:GLN148
|
4.3
|
20.6
|
1.0
|
|
C
|
B:GLY149
|
4.3
|
14.6
|
1.0
|
|
N
|
B:PHE76
|
4.3
|
17.0
|
1.0
|
|
O
|
B:ALA75
|
4.4
|
12.1
|
1.0
|
|
O
|
B:HOH938
|
4.4
|
15.5
|
1.0
|
|
O
|
B:THR147
|
4.5
|
17.1
|
1.0
|
|
CA
|
B:ARG77
|
4.6
|
16.7
|
1.0
|
|
O
|
B:GLY149
|
4.7
|
11.9
|
1.0
|
|
C
|
B:ALA75
|
4.7
|
15.6
|
1.0
|
|
CG
|
B:PHE76
|
4.7
|
18.6
|
1.0
|
|
CA
|
B:GLN148
|
4.9
|
27.1
|
1.0
|
|
O3A
|
B:GDP501
|
5.0
|
19.4
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 4ido
Go back to
Fluorine Binding Sites List in 4ido
Fluorine binding site 8 out
of 8 in the Human Atlastin-1 1-446, C-HIS6, GDPALF4-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Human Atlastin-1 1-446, C-HIS6, GDPALF4- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F502
b:21.4
occ:1.00
|
F4
|
B:ALF502
|
0.0
|
21.4
|
1.0
|
|
AL
|
B:ALF502
|
1.8
|
17.7
|
1.0
|
|
N
|
B:GLU119
|
2.5
|
23.3
|
1.0
|
|
F1
|
B:ALF502
|
2.5
|
20.4
|
1.0
|
|
F2
|
B:ALF502
|
2.5
|
22.8
|
1.0
|
|
O
|
B:HOH789
|
2.8
|
12.2
|
1.0
|
|
O3B
|
B:GDP501
|
2.8
|
10.6
|
1.0
|
|
N
|
B:THR120
|
2.9
|
15.2
|
1.0
|
|
NH2
|
B:ARG77
|
3.0
|
16.3
|
1.0
|
|
O
|
B:HOH601
|
3.1
|
18.9
|
1.0
|
|
CA
|
B:GLU119
|
3.2
|
22.0
|
1.0
|
|
CB
|
B:GLU119
|
3.2
|
20.9
|
1.0
|
|
C
|
B:GLU119
|
3.5
|
23.9
|
1.0
|
|
F3
|
B:ALF502
|
3.6
|
21.2
|
1.0
|
|
C
|
B:ARG118
|
3.6
|
21.1
|
1.0
|
|
MG
|
B:MG503
|
3.7
|
17.5
|
1.0
|
|
NE
|
B:ARG77
|
3.7
|
22.8
|
1.0
|
|
CZ
|
B:ARG77
|
3.8
|
20.4
|
1.0
|
|
CA
|
B:ARG118
|
3.8
|
23.0
|
1.0
|
|
OG1
|
B:THR120
|
3.9
|
17.8
|
1.0
|
|
PB
|
B:GDP501
|
4.0
|
16.4
|
1.0
|
|
O2B
|
B:GDP501
|
4.0
|
13.8
|
1.0
|
|
CA
|
B:THR120
|
4.0
|
19.1
|
1.0
|
|
CB
|
B:THR120
|
4.1
|
21.3
|
1.0
|
|
O1A
|
B:GDP501
|
4.2
|
25.6
|
1.0
|
|
CB
|
B:ARG118
|
4.3
|
25.9
|
1.0
|
|
O
|
B:THR120
|
4.3
|
13.8
|
1.0
|
|
CG
|
B:GLU119
|
4.4
|
19.4
|
1.0
|
|
O
|
B:GLU119
|
4.7
|
22.7
|
1.0
|
|
C
|
B:THR120
|
4.7
|
23.6
|
1.0
|
|
O
|
B:ARG118
|
4.7
|
17.5
|
1.0
|
|
O3A
|
B:GDP501
|
4.8
|
19.4
|
1.0
|
|
N
|
B:ARG77
|
5.0
|
15.0
|
1.0
|
|
Reference:
L.J.Byrnes,
A.Singh,
K.Szeto,
N.M.Benvin,
J.P.O'donnell,
W.R.Zipfel,
H.Sondermann.
Structural Basis For Conformational Switching and Gtp Loading of the Large G Protein Atlastin. Embo J. V. 32 369 2013.
ISSN: ISSN 0261-4189
PubMed: 23334294
DOI: 10.1038/EMBOJ.2012.353
Page generated: Thu Aug 1 02:21:24 2024
|
