Fluorine in PDB 4ijv: Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine
Enzymatic activity of Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine
All present enzymatic activity of Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine:
1.1.1.146;
Protein crystallography data
The structure of Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine, PDB code: 4ijv
was solved by
S.Sheriff,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.98 /
2.35
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.400,
94.000,
167.800,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.9 /
21.3
|
Other elements in 4ijv:
The structure of Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine
(pdb code 4ijv). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine, PDB code: 4ijv:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 4ijv
Go back to
Fluorine Binding Sites List in 4ijv
Fluorine binding site 1 out
of 4 in the Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F302
b:41.2
occ:1.00
|
F27
|
A:1EN302
|
0.0
|
41.2
|
1.0
|
C22
|
A:1EN302
|
1.3
|
37.9
|
1.0
|
C23
|
A:1EN302
|
2.4
|
37.6
|
1.0
|
C21
|
A:1EN302
|
2.4
|
33.1
|
1.0
|
O20
|
A:1EN302
|
2.7
|
28.8
|
1.0
|
O2N
|
A:NAP301
|
2.8
|
17.6
|
1.0
|
N7N
|
A:NAP301
|
3.4
|
20.4
|
1.0
|
PN
|
A:NAP301
|
3.6
|
19.3
|
1.0
|
O3
|
A:NAP301
|
3.6
|
17.8
|
1.0
|
C5
|
A:1EN302
|
3.6
|
28.2
|
1.0
|
C24
|
A:1EN302
|
3.6
|
38.9
|
1.0
|
C26
|
A:1EN302
|
3.7
|
32.5
|
1.0
|
O5D
|
A:NAP301
|
3.7
|
18.6
|
1.0
|
CB
|
A:ALA223
|
3.7
|
24.5
|
1.0
|
C6
|
A:1EN302
|
3.8
|
27.9
|
1.0
|
C7N
|
A:NAP301
|
4.0
|
23.0
|
1.0
|
C2N
|
A:NAP301
|
4.0
|
20.2
|
1.0
|
CD1
|
A:ILE121
|
4.1
|
18.6
|
1.0
|
C25
|
A:1EN302
|
4.1
|
37.6
|
1.0
|
CA
|
A:ALA223
|
4.2
|
24.2
|
1.0
|
C3N
|
A:NAP301
|
4.3
|
21.4
|
1.0
|
OG1
|
A:THR220
|
4.3
|
22.1
|
1.0
|
N
|
A:ALA223
|
4.3
|
24.8
|
1.0
|
C2D
|
A:NAP301
|
4.6
|
19.0
|
1.0
|
O2A
|
A:NAP301
|
4.7
|
15.6
|
1.0
|
PA
|
A:NAP301
|
4.8
|
18.4
|
1.0
|
O7N
|
A:NAP301
|
4.8
|
23.9
|
1.0
|
C4
|
A:1EN302
|
4.9
|
27.5
|
1.0
|
N1N
|
A:NAP301
|
4.9
|
20.3
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 4ijv
Go back to
Fluorine Binding Sites List in 4ijv
Fluorine binding site 2 out
of 4 in the Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F302
b:41.1
occ:1.00
|
F27
|
B:1EN302
|
0.0
|
41.1
|
1.0
|
C22
|
B:1EN302
|
1.3
|
36.1
|
1.0
|
C21
|
B:1EN302
|
2.4
|
29.8
|
1.0
|
C23
|
B:1EN302
|
2.4
|
34.3
|
1.0
|
O20
|
B:1EN302
|
2.7
|
29.2
|
1.0
|
O2N
|
B:NAP301
|
2.7
|
17.1
|
1.0
|
N7N
|
B:NAP301
|
3.4
|
12.7
|
1.0
|
PN
|
B:NAP301
|
3.6
|
19.2
|
1.0
|
O3
|
B:NAP301
|
3.6
|
21.8
|
1.0
|
O5D
|
B:NAP301
|
3.7
|
18.0
|
1.0
|
C24
|
B:1EN302
|
3.7
|
32.2
|
1.0
|
C26
|
B:1EN302
|
3.7
|
26.1
|
1.0
|
C5
|
B:1EN302
|
3.7
|
23.4
|
1.0
|
CB
|
B:ALA223
|
3.9
|
19.7
|
1.0
|
CD1
|
B:ILE121
|
3.9
|
25.4
|
1.0
|
C7N
|
B:NAP301
|
4.0
|
14.9
|
1.0
|
C2N
|
B:NAP301
|
4.0
|
15.3
|
1.0
|
C6
|
B:1EN302
|
4.0
|
20.7
|
1.0
|
C25
|
B:1EN302
|
4.1
|
29.5
|
1.0
|
C3N
|
B:NAP301
|
4.2
|
13.5
|
1.0
|
CA
|
B:ALA223
|
4.4
|
19.4
|
1.0
|
C2D
|
B:NAP301
|
4.4
|
22.2
|
1.0
|
OG1
|
B:THR220
|
4.4
|
20.9
|
1.0
|
N
|
B:ALA223
|
4.4
|
19.6
|
1.0
|
O7N
|
B:NAP301
|
4.8
|
16.4
|
1.0
|
O2A
|
B:NAP301
|
4.8
|
23.1
|
1.0
|
C4
|
B:1EN302
|
4.9
|
20.3
|
1.0
|
PA
|
B:NAP301
|
4.9
|
22.8
|
1.0
|
N1N
|
B:NAP301
|
4.9
|
16.6
|
1.0
|
CG2
|
B:THR222
|
5.0
|
37.6
|
1.0
|
O2D
|
B:NAP301
|
5.0
|
23.5
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 4ijv
Go back to
Fluorine Binding Sites List in 4ijv
Fluorine binding site 3 out
of 4 in the Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F302
b:38.3
occ:1.00
|
F27
|
D:1EN302
|
0.0
|
38.3
|
1.0
|
C22
|
D:1EN302
|
1.3
|
27.4
|
1.0
|
C21
|
D:1EN302
|
2.3
|
21.6
|
1.0
|
C23
|
D:1EN302
|
2.4
|
22.5
|
1.0
|
O2N
|
D:NAP301
|
2.6
|
13.7
|
1.0
|
O20
|
D:1EN302
|
2.7
|
20.2
|
1.0
|
N7N
|
D:NAP301
|
3.2
|
12.2
|
1.0
|
O5D
|
D:NAP301
|
3.5
|
16.3
|
1.0
|
PN
|
D:NAP301
|
3.5
|
16.0
|
1.0
|
C2N
|
D:NAP301
|
3.5
|
10.8
|
1.0
|
C5
|
D:1EN302
|
3.5
|
17.7
|
1.0
|
C26
|
D:1EN302
|
3.6
|
16.9
|
1.0
|
C24
|
D:1EN302
|
3.7
|
20.6
|
1.0
|
C7N
|
D:NAP301
|
3.7
|
14.5
|
1.0
|
O3
|
D:NAP301
|
3.8
|
14.5
|
1.0
|
C6
|
D:1EN302
|
3.8
|
17.4
|
1.0
|
CB
|
D:ALA223
|
3.8
|
16.5
|
1.0
|
C3N
|
D:NAP301
|
3.8
|
15.6
|
1.0
|
C25
|
D:1EN302
|
4.1
|
18.3
|
1.0
|
CD1
|
D:ILE121
|
4.2
|
11.2
|
1.0
|
C2D
|
D:NAP301
|
4.3
|
15.2
|
1.0
|
OG1
|
D:THR220
|
4.3
|
14.9
|
1.0
|
CA
|
D:ALA223
|
4.4
|
16.1
|
1.0
|
N1N
|
D:NAP301
|
4.5
|
12.6
|
1.0
|
O7N
|
D:NAP301
|
4.6
|
13.0
|
1.0
|
N
|
D:ALA223
|
4.6
|
16.0
|
1.0
|
C4
|
D:1EN302
|
4.6
|
16.5
|
1.0
|
C5D
|
D:NAP301
|
4.8
|
14.2
|
1.0
|
C1D
|
D:NAP301
|
4.9
|
14.0
|
1.0
|
O2A
|
D:NAP301
|
4.9
|
13.0
|
1.0
|
O1N
|
D:NAP301
|
4.9
|
15.8
|
1.0
|
C4N
|
D:NAP301
|
5.0
|
15.1
|
1.0
|
O4D
|
D:NAP301
|
5.0
|
15.5
|
1.0
|
PA
|
D:NAP301
|
5.0
|
11.9
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 4ijv
Go back to
Fluorine Binding Sites List in 4ijv
Fluorine binding site 4 out
of 4 in the Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of 11B-HSD1 Double Mutant (L262R, F278E) in Complex with 3-[1-(4-Chlorophenyl)Cyclopropyl]-8-(2-Fluorophenoxy)[1,2, 4]Triazolo[4,3-A]Pyridine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F302
b:38.2
occ:1.00
|
F27
|
E:1EN302
|
0.0
|
38.2
|
1.0
|
C22
|
E:1EN302
|
1.3
|
31.8
|
1.0
|
C21
|
E:1EN302
|
2.4
|
25.3
|
1.0
|
C23
|
E:1EN302
|
2.4
|
28.7
|
1.0
|
O20
|
E:1EN302
|
2.7
|
22.4
|
1.0
|
O2N
|
E:NAP301
|
2.7
|
23.6
|
1.0
|
N7N
|
E:NAP301
|
3.4
|
12.9
|
1.0
|
O5D
|
E:NAP301
|
3.4
|
20.6
|
1.0
|
PN
|
E:NAP301
|
3.4
|
24.0
|
1.0
|
O3
|
E:NAP301
|
3.5
|
20.5
|
1.0
|
C5
|
E:1EN302
|
3.6
|
20.8
|
1.0
|
C24
|
E:1EN302
|
3.7
|
25.6
|
1.0
|
C26
|
E:1EN302
|
3.7
|
20.1
|
1.0
|
C2N
|
E:NAP301
|
3.8
|
16.4
|
1.0
|
C6
|
E:1EN302
|
3.9
|
22.9
|
1.0
|
C7N
|
E:NAP301
|
3.9
|
15.4
|
1.0
|
CB
|
E:ALA223
|
3.9
|
20.9
|
1.0
|
CD1
|
E:ILE121
|
4.0
|
17.4
|
1.0
|
C3N
|
E:NAP301
|
4.1
|
14.9
|
1.0
|
C25
|
E:1EN302
|
4.1
|
23.1
|
1.0
|
C2D
|
E:NAP301
|
4.3
|
18.1
|
1.0
|
OG1
|
E:THR220
|
4.4
|
22.2
|
1.0
|
CA
|
E:ALA223
|
4.5
|
20.7
|
1.0
|
N
|
E:ALA223
|
4.6
|
21.2
|
1.0
|
O
|
E:HOH436
|
4.6
|
34.7
|
1.0
|
O7N
|
E:NAP301
|
4.7
|
18.1
|
1.0
|
N1N
|
E:NAP301
|
4.7
|
17.2
|
1.0
|
O2A
|
E:NAP301
|
4.8
|
16.3
|
1.0
|
C4
|
E:1EN302
|
4.8
|
21.8
|
1.0
|
C5D
|
E:NAP301
|
4.8
|
19.4
|
1.0
|
PA
|
E:NAP301
|
4.8
|
19.3
|
1.0
|
O1N
|
E:NAP301
|
4.9
|
25.9
|
1.0
|
|
Reference:
J.Li,
L.J.Kennedy,
H.Wang,
J.J.Li,
S.J.Walker,
Z.Hong,
S.P.O'connor,
A.Nayeem,
D.M.Camac,
P.E.Morin,
S.Sheriff,
M.Wang,
T.Harper,
R.Golla,
R.Seethala,
T.Harrity,
R.P.Ponticiello,
N.N.Morgan,
J.R.Taylor,
R.Zebo,
D.A.Gordon,
J.A.Robl.
Optimization of 1,2,4-Triazolopyridines As Inhibitors of Human 11 Beta-Hydroxysteroid Dehydrogenase Type 1 (11 Beta-Hsd-1). Acs Med Chem Lett V. 5 803 2014.
ISSN: ISSN 1464-3405
PubMed: 25050169
DOI: 10.1021/ML500144H
Page generated: Thu Aug 1 02:31:49 2024
|