Fluorine in PDB 4iw8: Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Protein crystallography data
The structure of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A, PDB code: 4iw8
was solved by
J.C.Nwachukwu,
S.Srinivasan,
A.A.Parent,
V.Cavett,
J.Nowak,
T.S.Hughes,
D.J.Kojetin,
J.A.Katzenellenbogen,
K.W.Nettles,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.73 /
2.04
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.170,
81.094,
58.119,
90.00,
109.49,
90.00
|
R / Rfree (%)
|
20.8 /
24.7
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
(pdb code 4iw8). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 9 binding sites of Fluorine where determined in the
Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A, PDB code: 4iw8:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Fluorine binding site 1 out
of 9 in 4iw8
Go back to
Fluorine Binding Sites List in 4iw8
Fluorine binding site 1 out
of 9 in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F601
b:48.0
occ:1.00
|
FAX
|
A:KN3601
|
0.0
|
48.0
|
1.0
|
CAW
|
A:KN3601
|
1.4
|
49.3
|
1.0
|
HAKA
|
A:KN3601
|
2.1
|
56.4
|
1.0
|
FAY
|
A:KN3601
|
2.3
|
51.9
|
1.0
|
FAZ
|
A:KN3601
|
2.3
|
48.4
|
1.0
|
CAF
|
A:KN3601
|
2.4
|
37.0
|
1.0
|
CAK
|
A:KN3601
|
3.0
|
47.0
|
1.0
|
CAE
|
A:KN3601
|
3.1
|
33.9
|
1.0
|
CA
|
A:GLY521
|
3.3
|
41.1
|
1.0
|
NAI
|
A:KN3601
|
3.3
|
40.9
|
1.0
|
O
|
A:GLY521
|
3.5
|
36.4
|
1.0
|
CAA
|
A:KN3601
|
3.6
|
46.5
|
1.0
|
HAL
|
A:KN3601
|
3.7
|
91.7
|
1.0
|
C
|
A:GLY521
|
3.7
|
39.3
|
1.0
|
CAL
|
A:KN3601
|
3.7
|
76.5
|
1.0
|
HAK
|
A:KN3601
|
3.7
|
56.4
|
1.0
|
HAA
|
A:KN3601
|
3.8
|
55.7
|
1.0
|
CAD
|
A:KN3601
|
4.4
|
40.1
|
1.0
|
CB
|
A:HIS524
|
4.5
|
51.0
|
1.0
|
CE
|
A:MET388
|
4.6
|
32.7
|
1.0
|
N
|
A:GLY521
|
4.6
|
41.4
|
1.0
|
CD2
|
A:LEU384
|
4.6
|
32.6
|
1.0
|
CD1
|
A:ILE424
|
4.6
|
58.6
|
1.0
|
NAH
|
A:KN3601
|
4.7
|
43.3
|
1.0
|
SD
|
A:MET421
|
4.8
|
0.1
|
1.0
|
CAB
|
A:KN3601
|
4.8
|
47.1
|
1.0
|
N
|
A:MET522
|
4.9
|
40.4
|
1.0
|
CE
|
A:MET421
|
4.9
|
0.1
|
1.0
|
|
Fluorine binding site 2 out
of 9 in 4iw8
Go back to
Fluorine Binding Sites List in 4iw8
Fluorine binding site 2 out
of 9 in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F601
b:51.9
occ:1.00
|
FAY
|
A:KN3601
|
0.0
|
51.9
|
1.0
|
CAW
|
A:KN3601
|
1.4
|
49.3
|
1.0
|
FAX
|
A:KN3601
|
2.3
|
48.0
|
1.0
|
FAZ
|
A:KN3601
|
2.3
|
48.4
|
1.0
|
HAA
|
A:KN3601
|
2.4
|
55.7
|
1.0
|
CAF
|
A:KN3601
|
2.4
|
37.0
|
1.0
|
CAA
|
A:KN3601
|
2.7
|
46.5
|
1.0
|
O
|
A:GLY521
|
3.3
|
36.4
|
1.0
|
N
|
A:LEU525
|
3.6
|
39.0
|
1.0
|
CA
|
A:LEU525
|
3.8
|
44.7
|
1.0
|
CAE
|
A:KN3601
|
3.8
|
33.9
|
1.0
|
CB
|
A:LEU525
|
3.8
|
43.8
|
1.0
|
CB
|
A:HIS524
|
4.0
|
51.0
|
1.0
|
HAKA
|
A:KN3601
|
4.1
|
56.4
|
1.0
|
C
|
A:HIS524
|
4.2
|
39.4
|
1.0
|
SD
|
A:MET528
|
4.2
|
56.7
|
1.0
|
C
|
A:GLY521
|
4.2
|
39.3
|
1.0
|
CAB
|
A:KN3601
|
4.2
|
47.1
|
1.0
|
CD1
|
A:LEU525
|
4.4
|
49.6
|
1.0
|
HAL
|
A:KN3601
|
4.5
|
91.7
|
1.0
|
CE
|
A:MET343
|
4.5
|
42.0
|
1.0
|
CA
|
A:GLY521
|
4.5
|
41.1
|
1.0
|
CA
|
A:HIS524
|
4.7
|
43.4
|
1.0
|
NAI
|
A:KN3601
|
4.7
|
40.9
|
1.0
|
CG
|
A:LEU525
|
4.7
|
49.5
|
1.0
|
CAK
|
A:KN3601
|
4.7
|
47.0
|
1.0
|
O
|
A:HIS524
|
4.8
|
42.8
|
1.0
|
HAB
|
A:KN3601
|
4.8
|
56.4
|
1.0
|
CE
|
A:MET421
|
4.9
|
0.1
|
1.0
|
CAD
|
A:KN3601
|
5.0
|
40.1
|
1.0
|
CE
|
A:MET528
|
5.0
|
52.7
|
1.0
|
|
Fluorine binding site 3 out
of 9 in 4iw8
Go back to
Fluorine Binding Sites List in 4iw8
Fluorine binding site 3 out
of 9 in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F601
b:48.4
occ:1.00
|
FAZ
|
A:KN3601
|
0.0
|
48.4
|
1.0
|
CAW
|
A:KN3601
|
1.4
|
49.3
|
1.0
|
HAL
|
A:KN3601
|
2.2
|
91.7
|
1.0
|
FAY
|
A:KN3601
|
2.3
|
51.9
|
1.0
|
FAX
|
A:KN3601
|
2.3
|
48.0
|
1.0
|
CAF
|
A:KN3601
|
2.4
|
37.0
|
1.0
|
HAKA
|
A:KN3601
|
2.8
|
56.4
|
1.0
|
CAL
|
A:KN3601
|
2.9
|
76.5
|
1.0
|
CAK
|
A:KN3601
|
3.1
|
47.0
|
1.0
|
CE
|
A:MET343
|
3.2
|
42.0
|
1.0
|
CAE
|
A:KN3601
|
3.2
|
33.9
|
1.0
|
NAI
|
A:KN3601
|
3.5
|
40.9
|
1.0
|
CAA
|
A:KN3601
|
3.5
|
46.5
|
1.0
|
SD
|
A:MET421
|
3.6
|
0.1
|
1.0
|
CE
|
A:MET421
|
3.7
|
0.1
|
1.0
|
HAA
|
A:KN3601
|
3.7
|
55.7
|
1.0
|
HAK
|
A:KN3601
|
4.1
|
56.4
|
1.0
|
SD
|
A:MET343
|
4.2
|
71.1
|
1.0
|
CAM
|
A:KN3601
|
4.3
|
75.6
|
1.0
|
CAD
|
A:KN3601
|
4.5
|
40.1
|
1.0
|
HANA
|
A:KN3601
|
4.7
|
84.1
|
1.0
|
CB
|
A:HIS524
|
4.7
|
51.0
|
1.0
|
SD
|
A:MET528
|
4.7
|
56.7
|
1.0
|
CAB
|
A:KN3601
|
4.8
|
47.1
|
1.0
|
NAH
|
A:KN3601
|
4.8
|
43.3
|
1.0
|
HANB
|
A:KN3601
|
4.9
|
84.1
|
1.0
|
CAN
|
A:KN3601
|
4.9
|
70.2
|
1.0
|
|
Fluorine binding site 4 out
of 9 in 4iw8
Go back to
Fluorine Binding Sites List in 4iw8
Fluorine binding site 4 out
of 9 in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:47.0
occ:0.46
|
FAX
|
B:KN3601
|
0.0
|
47.0
|
0.5
|
CAW
|
B:KN3601
|
1.4
|
48.5
|
0.5
|
FAZ
|
B:KN3601
|
2.1
|
48.5
|
0.5
|
HAKA
|
B:KN3601
|
2.2
|
50.3
|
0.5
|
FAY
|
B:KN3601
|
2.3
|
47.5
|
0.5
|
FAZ
|
B:KN3601
|
2.3
|
49.5
|
0.5
|
FAX
|
B:KN3601
|
2.3
|
48.3
|
0.5
|
HAA
|
B:KN3601
|
2.4
|
51.3
|
0.5
|
CAF
|
B:KN3601
|
2.4
|
41.8
|
0.5
|
CAW
|
B:KN3601
|
2.7
|
46.6
|
0.5
|
CAA
|
B:KN3601
|
2.8
|
42.9
|
0.5
|
CAK
|
B:KN3601
|
3.1
|
42.0
|
0.5
|
CAL
|
B:KN3601
|
3.3
|
44.2
|
0.5
|
FAY
|
B:KN3601
|
3.3
|
44.7
|
0.5
|
CD1
|
B:ILE424
|
3.4
|
47.1
|
0.7
|
HAL
|
B:KN3601
|
3.6
|
52.9
|
0.5
|
ND1
|
B:HIS524
|
3.6
|
51.1
|
0.7
|
HAK
|
B:KN3601
|
3.7
|
50.3
|
0.5
|
HAOA
|
B:KN3601
|
3.7
|
0.7
|
0.5
|
CB
|
B:HIS524
|
3.8
|
40.8
|
0.7
|
CAE
|
B:KN3601
|
3.8
|
41.5
|
0.5
|
CG
|
B:HIS524
|
3.9
|
48.8
|
0.7
|
CAF
|
B:KN3601
|
4.0
|
43.5
|
0.5
|
CAM
|
B:KN3601
|
4.1
|
44.7
|
0.5
|
N
|
B:MET421
|
4.1
|
96.9
|
0.8
|
HAK
|
B:KN3601
|
4.2
|
51.8
|
0.5
|
NAI
|
B:KN3601
|
4.2
|
41.2
|
0.5
|
CAB
|
B:KN3601
|
4.2
|
41.8
|
0.5
|
CA
|
B:GLY521
|
4.3
|
28.6
|
0.8
|
CAO
|
B:KN3601
|
4.3
|
1.0
|
0.5
|
HAKA
|
B:KN3601
|
4.4
|
51.8
|
0.5
|
CAE
|
B:KN3601
|
4.5
|
41.6
|
0.5
|
CE1
|
B:HIS524
|
4.5
|
53.2
|
0.7
|
O
|
B:GLY420
|
4.5
|
1.0
|
1.0
|
O
|
B:GLY521
|
4.5
|
30.2
|
0.8
|
CG1
|
B:ILE424
|
4.5
|
45.8
|
0.7
|
CAK
|
B:KN3601
|
4.6
|
43.2
|
0.5
|
CB
|
B:MET421
|
4.6
|
95.4
|
1.0
|
CB
|
B:ILE424
|
4.6
|
41.3
|
0.7
|
NAI
|
B:KN3601
|
4.6
|
42.4
|
0.5
|
HAO
|
B:KN3601
|
4.7
|
0.7
|
0.5
|
C
|
B:GLY420
|
4.7
|
0.5
|
1.0
|
CG2
|
B:ILE424
|
4.7
|
41.6
|
0.7
|
CD2
|
B:HIS524
|
4.8
|
53.8
|
0.7
|
HAB
|
B:KN3601
|
4.8
|
50.0
|
0.5
|
CE
|
B:MET343
|
4.9
|
64.9
|
0.8
|
C
|
B:GLY521
|
4.9
|
30.7
|
0.8
|
CAD
|
B:KN3601
|
5.0
|
40.3
|
0.5
|
CA
|
B:MET421
|
5.0
|
92.2
|
0.7
|
|
Fluorine binding site 5 out
of 9 in 4iw8
Go back to
Fluorine Binding Sites List in 4iw8
Fluorine binding site 5 out
of 9 in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:48.3
occ:0.54
|
FAX
|
B:KN3601
|
0.0
|
48.3
|
0.5
|
FAY
|
B:KN3601
|
0.6
|
47.5
|
0.5
|
CAW
|
B:KN3601
|
1.4
|
46.6
|
0.5
|
CAW
|
B:KN3601
|
1.5
|
48.5
|
0.5
|
HAKA
|
B:KN3601
|
2.1
|
50.3
|
0.5
|
CAF
|
B:KN3601
|
2.2
|
41.8
|
0.5
|
FAY
|
B:KN3601
|
2.3
|
44.7
|
0.5
|
FAZ
|
B:KN3601
|
2.3
|
48.5
|
0.5
|
FAX
|
B:KN3601
|
2.3
|
47.0
|
0.5
|
HAKA
|
B:KN3601
|
2.3
|
51.8
|
0.5
|
CAF
|
B:KN3601
|
2.4
|
43.5
|
0.5
|
FAZ
|
B:KN3601
|
2.7
|
49.5
|
0.5
|
CAE
|
B:KN3601
|
2.8
|
41.5
|
0.5
|
CAK
|
B:KN3601
|
2.9
|
43.2
|
0.5
|
HAK
|
B:KN3601
|
2.9
|
51.8
|
0.5
|
CAK
|
B:KN3601
|
3.1
|
42.0
|
0.5
|
O
|
B:GLY521
|
3.1
|
30.2
|
0.8
|
NAI
|
B:KN3601
|
3.1
|
42.4
|
0.5
|
CAE
|
B:KN3601
|
3.1
|
41.6
|
0.5
|
CA
|
B:GLY521
|
3.2
|
28.6
|
0.8
|
CAA
|
B:KN3601
|
3.3
|
42.9
|
0.5
|
NAI
|
B:KN3601
|
3.4
|
41.2
|
0.5
|
C
|
B:GLY521
|
3.5
|
30.7
|
0.8
|
CAA
|
B:KN3601
|
3.5
|
43.5
|
0.5
|
HAK
|
B:KN3601
|
3.6
|
50.3
|
0.5
|
HAA
|
B:KN3601
|
3.7
|
51.3
|
0.5
|
HAA
|
B:KN3601
|
3.7
|
52.1
|
0.5
|
CAL
|
B:KN3601
|
4.1
|
44.2
|
0.5
|
CAD
|
B:KN3601
|
4.1
|
40.3
|
0.5
|
HAL
|
B:KN3601
|
4.3
|
52.9
|
0.5
|
CAL
|
B:KN3601
|
4.4
|
44.6
|
0.5
|
NAH
|
B:KN3601
|
4.4
|
41.9
|
0.5
|
CB
|
B:HIS524
|
4.4
|
40.8
|
0.7
|
CAD
|
B:KN3601
|
4.5
|
41.5
|
0.5
|
CD1
|
B:ILE424
|
4.5
|
47.1
|
0.7
|
CAB
|
B:KN3601
|
4.5
|
41.8
|
0.5
|
N
|
B:LEU525
|
4.6
|
34.6
|
0.8
|
N
|
B:GLY521
|
4.6
|
31.2
|
0.8
|
CE
|
B:MET388
|
4.6
|
20.4
|
0.8
|
N
|
B:MET522
|
4.7
|
27.7
|
0.9
|
HANB
|
B:KN3601
|
4.7
|
0.5
|
0.5
|
NAH
|
B:KN3601
|
4.8
|
40.9
|
0.5
|
CD2
|
B:LEU384
|
4.8
|
19.3
|
0.7
|
CAB
|
B:KN3601
|
4.8
|
44.5
|
0.5
|
CAC
|
B:KN3601
|
4.8
|
40.4
|
0.5
|
HAL
|
B:KN3601
|
4.9
|
53.4
|
0.5
|
ND1
|
B:HIS524
|
4.9
|
51.1
|
0.7
|
CAG
|
B:KN3601
|
4.9
|
40.0
|
0.5
|
CB
|
B:LEU525
|
4.9
|
36.2
|
0.8
|
|
Fluorine binding site 6 out
of 9 in 4iw8
Go back to
Fluorine Binding Sites List in 4iw8
Fluorine binding site 6 out
of 9 in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:47.5
occ:0.46
|
FAY
|
B:KN3601
|
0.0
|
47.5
|
0.5
|
FAX
|
B:KN3601
|
0.6
|
48.3
|
0.5
|
CAW
|
B:KN3601
|
1.0
|
46.6
|
0.5
|
CAW
|
B:KN3601
|
1.4
|
48.5
|
0.5
|
FAY
|
B:KN3601
|
1.7
|
44.7
|
0.5
|
FAZ
|
B:KN3601
|
2.0
|
48.5
|
0.5
|
HAKA
|
B:KN3601
|
2.2
|
51.8
|
0.5
|
FAX
|
B:KN3601
|
2.3
|
47.0
|
0.5
|
FAZ
|
B:KN3601
|
2.3
|
49.5
|
0.5
|
CAF
|
B:KN3601
|
2.3
|
43.5
|
0.5
|
CAF
|
B:KN3601
|
2.4
|
41.8
|
0.5
|
HAKA
|
B:KN3601
|
2.5
|
50.3
|
0.5
|
HAK
|
B:KN3601
|
2.6
|
51.8
|
0.5
|
CAK
|
B:KN3601
|
2.7
|
43.2
|
0.5
|
O
|
B:GLY521
|
3.0
|
30.2
|
0.8
|
CAE
|
B:KN3601
|
3.0
|
41.5
|
0.5
|
NAI
|
B:KN3601
|
3.1
|
42.4
|
0.5
|
CAE
|
B:KN3601
|
3.3
|
41.6
|
0.5
|
CAA
|
B:KN3601
|
3.3
|
43.5
|
0.5
|
CAK
|
B:KN3601
|
3.4
|
42.0
|
0.5
|
HAA
|
B:KN3601
|
3.4
|
52.1
|
0.5
|
CA
|
B:GLY521
|
3.5
|
28.6
|
0.8
|
C
|
B:GLY521
|
3.6
|
30.7
|
0.8
|
CAA
|
B:KN3601
|
3.6
|
42.9
|
0.5
|
NAI
|
B:KN3601
|
3.7
|
41.2
|
0.5
|
HAA
|
B:KN3601
|
3.9
|
51.3
|
0.5
|
HAK
|
B:KN3601
|
4.1
|
50.3
|
0.5
|
CB
|
B:HIS524
|
4.1
|
40.8
|
0.7
|
N
|
B:LEU525
|
4.1
|
34.6
|
0.8
|
CAL
|
B:KN3601
|
4.2
|
44.6
|
0.5
|
CAL
|
B:KN3601
|
4.2
|
44.2
|
0.5
|
HAL
|
B:KN3601
|
4.4
|
52.9
|
0.5
|
CAD
|
B:KN3601
|
4.4
|
40.3
|
0.5
|
HANB
|
B:KN3601
|
4.4
|
0.5
|
0.5
|
ND1
|
B:HIS524
|
4.4
|
51.1
|
0.7
|
NAH
|
B:KN3601
|
4.5
|
41.9
|
0.5
|
CB
|
B:LEU525
|
4.6
|
36.2
|
0.8
|
CAD
|
B:KN3601
|
4.6
|
41.5
|
0.5
|
CG
|
B:HIS524
|
4.7
|
48.8
|
0.7
|
CA
|
B:LEU525
|
4.7
|
37.4
|
0.8
|
CAB
|
B:KN3601
|
4.7
|
44.5
|
0.5
|
C
|
B:HIS524
|
4.7
|
35.8
|
0.7
|
CD1
|
B:ILE424
|
4.7
|
47.1
|
0.7
|
HAL
|
B:KN3601
|
4.7
|
53.4
|
0.5
|
CAB
|
B:KN3601
|
4.9
|
41.8
|
0.5
|
HAN
|
B:KN3601
|
4.9
|
0.5
|
0.5
|
N
|
B:MET522
|
4.9
|
27.7
|
0.9
|
CA
|
B:HIS524
|
4.9
|
33.3
|
0.7
|
N
|
B:GLY521
|
4.9
|
31.2
|
0.8
|
CAN
|
B:KN3601
|
5.0
|
0.5
|
0.5
|
|
Fluorine binding site 7 out
of 9 in 4iw8
Go back to
Fluorine Binding Sites List in 4iw8
Fluorine binding site 7 out
of 9 in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:44.7
occ:0.54
|
FAY
|
B:KN3601
|
0.0
|
44.7
|
0.5
|
CAW
|
B:KN3601
|
1.4
|
46.6
|
0.5
|
FAY
|
B:KN3601
|
1.7
|
47.5
|
0.5
|
HAK
|
B:KN3601
|
1.8
|
51.8
|
0.5
|
HAKA
|
B:KN3601
|
2.1
|
51.8
|
0.5
|
FAZ
|
B:KN3601
|
2.2
|
49.5
|
0.5
|
FAX
|
B:KN3601
|
2.3
|
48.3
|
0.5
|
FAZ
|
B:KN3601
|
2.3
|
48.5
|
0.5
|
CAK
|
B:KN3601
|
2.4
|
43.2
|
0.5
|
HAA
|
B:KN3601
|
2.4
|
52.1
|
0.5
|
CAW
|
B:KN3601
|
2.4
|
48.5
|
0.5
|
CAF
|
B:KN3601
|
2.4
|
43.5
|
0.5
|
CAA
|
B:KN3601
|
2.7
|
43.5
|
0.5
|
N
|
B:LEU525
|
3.3
|
34.6
|
0.8
|
FAX
|
B:KN3601
|
3.3
|
47.0
|
0.5
|
O
|
B:GLY521
|
3.4
|
30.2
|
0.8
|
CA
|
B:LEU525
|
3.4
|
37.4
|
0.8
|
CAL
|
B:KN3601
|
3.4
|
44.6
|
0.5
|
HAN
|
B:KN3601
|
3.4
|
0.5
|
0.5
|
NAI
|
B:KN3601
|
3.5
|
42.4
|
0.5
|
HANB
|
B:KN3601
|
3.5
|
0.5
|
0.5
|
CB
|
B:LEU525
|
3.5
|
36.2
|
0.8
|
CAF
|
B:KN3601
|
3.6
|
41.8
|
0.5
|
SD
|
B:MET528
|
3.7
|
0.2
|
0.9
|
CAN
|
B:KN3601
|
3.8
|
0.5
|
0.5
|
CAE
|
B:KN3601
|
3.8
|
41.6
|
0.5
|
CAE
|
B:KN3601
|
3.8
|
41.5
|
0.5
|
C
|
B:HIS524
|
3.9
|
35.8
|
0.7
|
HAKA
|
B:KN3601
|
3.9
|
50.3
|
0.5
|
ND1
|
B:HIS524
|
3.9
|
51.1
|
0.7
|
CAM
|
B:KN3601
|
4.1
|
42.9
|
0.5
|
CB
|
B:HIS524
|
4.1
|
40.8
|
0.7
|
HAL
|
B:KN3601
|
4.2
|
53.4
|
0.5
|
CD1
|
B:LEU525
|
4.2
|
40.0
|
0.8
|
CAB
|
B:KN3601
|
4.2
|
44.5
|
0.5
|
O
|
B:HIS524
|
4.4
|
39.1
|
0.7
|
C
|
B:GLY521
|
4.4
|
30.7
|
0.8
|
CG
|
B:LEU525
|
4.5
|
38.5
|
0.8
|
CG
|
B:HIS524
|
4.5
|
48.8
|
0.7
|
CA
|
B:HIS524
|
4.6
|
33.3
|
0.7
|
CAK
|
B:KN3601
|
4.7
|
42.0
|
0.5
|
NAI
|
B:KN3601
|
4.7
|
41.2
|
0.5
|
CA
|
B:GLY521
|
4.8
|
28.6
|
0.8
|
HANA
|
B:KN3601
|
4.8
|
0.5
|
0.5
|
HAB
|
B:KN3601
|
4.8
|
53.3
|
0.5
|
NAH
|
B:KN3601
|
4.8
|
41.9
|
0.5
|
CG
|
B:MET528
|
4.8
|
61.9
|
0.9
|
SD
|
B:MET343
|
4.9
|
83.5
|
0.8
|
C
|
B:LEU525
|
4.9
|
43.1
|
0.8
|
CAA
|
B:KN3601
|
4.9
|
42.9
|
0.5
|
CAD
|
B:KN3601
|
5.0
|
41.5
|
0.5
|
CE
|
B:MET343
|
5.0
|
64.9
|
0.8
|
|
Fluorine binding site 8 out
of 9 in 4iw8
Go back to
Fluorine Binding Sites List in 4iw8
Fluorine binding site 8 out
of 9 in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:49.5
occ:0.46
|
FAZ
|
B:KN3601
|
0.0
|
49.5
|
0.5
|
FAZ
|
B:KN3601
|
0.6
|
48.5
|
0.5
|
CAW
|
B:KN3601
|
1.4
|
48.5
|
0.5
|
CAW
|
B:KN3601
|
1.7
|
46.6
|
0.5
|
FAY
|
B:KN3601
|
2.2
|
44.7
|
0.5
|
FAX
|
B:KN3601
|
2.3
|
47.0
|
0.5
|
FAY
|
B:KN3601
|
2.3
|
47.5
|
0.5
|
CAF
|
B:KN3601
|
2.4
|
41.8
|
0.5
|
HAK
|
B:KN3601
|
2.4
|
51.8
|
0.5
|
FAX
|
B:KN3601
|
2.7
|
48.3
|
0.5
|
CAF
|
B:KN3601
|
2.8
|
43.5
|
0.5
|
HAKA
|
B:KN3601
|
2.9
|
50.3
|
0.5
|
HAL
|
B:KN3601
|
3.1
|
52.9
|
0.5
|
CAE
|
B:KN3601
|
3.2
|
41.5
|
0.5
|
CAK
|
B:KN3601
|
3.2
|
43.2
|
0.5
|
HANB
|
B:KN3601
|
3.3
|
0.5
|
0.5
|
HAKA
|
B:KN3601
|
3.4
|
51.8
|
0.5
|
CAL
|
B:KN3601
|
3.4
|
44.2
|
0.5
|
CAA
|
B:KN3601
|
3.5
|
42.9
|
0.5
|
CAK
|
B:KN3601
|
3.5
|
42.0
|
0.5
|
CE
|
B:MET343
|
3.5
|
64.9
|
0.8
|
NAI
|
B:KN3601
|
3.5
|
42.4
|
0.5
|
CAE
|
B:KN3601
|
3.6
|
41.6
|
0.5
|
ND1
|
B:HIS524
|
3.6
|
51.1
|
0.7
|
HAA
|
B:KN3601
|
3.6
|
51.3
|
0.5
|
SD
|
B:MET343
|
3.7
|
83.5
|
0.8
|
CAA
|
B:KN3601
|
3.8
|
43.5
|
0.5
|
HAA
|
B:KN3601
|
3.8
|
52.1
|
0.5
|
NAI
|
B:KN3601
|
3.9
|
41.2
|
0.5
|
HAN
|
B:KN3601
|
4.0
|
0.5
|
0.5
|
SD
|
B:MET528
|
4.1
|
0.2
|
0.9
|
CAN
|
B:KN3601
|
4.1
|
0.5
|
0.5
|
CE1
|
B:HIS524
|
4.4
|
53.2
|
0.7
|
HAK
|
B:KN3601
|
4.4
|
50.3
|
0.5
|
O
|
B:GLY420
|
4.4
|
1.0
|
1.0
|
CG
|
B:HIS524
|
4.5
|
48.8
|
0.7
|
CAD
|
B:KN3601
|
4.5
|
40.3
|
0.5
|
CAL
|
B:KN3601
|
4.6
|
44.6
|
0.5
|
CB
|
B:HIS524
|
4.6
|
40.8
|
0.7
|
CAM
|
B:KN3601
|
4.7
|
44.7
|
0.5
|
CD1
|
B:LEU346
|
4.7
|
49.6
|
0.8
|
CAB
|
B:KN3601
|
4.7
|
41.8
|
0.5
|
HANA
|
B:KN3601
|
4.8
|
0.5
|
0.5
|
CAM
|
B:KN3601
|
4.9
|
42.9
|
0.5
|
CAD
|
B:KN3601
|
4.9
|
41.5
|
0.5
|
NAH
|
B:KN3601
|
4.9
|
41.9
|
0.5
|
O
|
B:GLY521
|
5.0
|
30.2
|
0.8
|
|
Fluorine binding site 9 out
of 9 in 4iw8
Go back to
Fluorine Binding Sites List in 4iw8
Fluorine binding site 9 out
of 9 in the Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Crystal Structure of the Estrogen Receptor Alpha Ligand-Binding Domain in Complex with Dynamic Way-Derivative, 9A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:48.5
occ:0.54
|
FAZ
|
B:KN3601
|
0.0
|
48.5
|
0.5
|
FAZ
|
B:KN3601
|
0.6
|
49.5
|
0.5
|
CAW
|
B:KN3601
|
1.0
|
48.5
|
0.5
|
CAW
|
B:KN3601
|
1.4
|
46.6
|
0.5
|
CAF
|
B:KN3601
|
1.9
|
41.8
|
0.5
|
FAY
|
B:KN3601
|
2.0
|
47.5
|
0.5
|
FAX
|
B:KN3601
|
2.1
|
47.0
|
0.5
|
FAY
|
B:KN3601
|
2.3
|
44.7
|
0.5
|
FAX
|
B:KN3601
|
2.3
|
48.3
|
0.5
|
HAK
|
B:KN3601
|
2.3
|
51.8
|
0.5
|
HAKA
|
B:KN3601
|
2.4
|
50.3
|
0.5
|
CAF
|
B:KN3601
|
2.4
|
43.5
|
0.5
|
CAE
|
B:KN3601
|
2.7
|
41.5
|
0.5
|
HAL
|
B:KN3601
|
2.8
|
52.9
|
0.5
|
CAK
|
B:KN3601
|
2.9
|
42.0
|
0.5
|
CAA
|
B:KN3601
|
3.0
|
42.9
|
0.5
|
CAK
|
B:KN3601
|
3.0
|
43.2
|
0.5
|
CAL
|
B:KN3601
|
3.0
|
44.2
|
0.5
|
CAE
|
B:KN3601
|
3.1
|
41.6
|
0.5
|
NAI
|
B:KN3601
|
3.1
|
42.4
|
0.5
|
HAKA
|
B:KN3601
|
3.2
|
51.8
|
0.5
|
HAA
|
B:KN3601
|
3.3
|
51.3
|
0.5
|
NAI
|
B:KN3601
|
3.3
|
41.2
|
0.5
|
HANB
|
B:KN3601
|
3.4
|
0.5
|
0.5
|
CAA
|
B:KN3601
|
3.6
|
43.5
|
0.5
|
HAA
|
B:KN3601
|
3.8
|
52.1
|
0.5
|
HAK
|
B:KN3601
|
3.9
|
50.3
|
0.5
|
CE
|
B:MET343
|
4.0
|
64.9
|
0.8
|
CAD
|
B:KN3601
|
4.0
|
40.3
|
0.5
|
ND1
|
B:HIS524
|
4.0
|
51.1
|
0.7
|
SD
|
B:MET343
|
4.1
|
83.5
|
0.8
|
HAN
|
B:KN3601
|
4.2
|
0.5
|
0.5
|
CAN
|
B:KN3601
|
4.2
|
0.5
|
0.5
|
CAB
|
B:KN3601
|
4.2
|
41.8
|
0.5
|
CAM
|
B:KN3601
|
4.4
|
44.7
|
0.5
|
CAL
|
B:KN3601
|
4.4
|
44.6
|
0.5
|
CAD
|
B:KN3601
|
4.4
|
41.5
|
0.5
|
NAH
|
B:KN3601
|
4.5
|
41.9
|
0.5
|
SD
|
B:MET528
|
4.5
|
0.2
|
0.9
|
CD1
|
B:LEU346
|
4.6
|
49.6
|
0.8
|
O
|
B:GLY420
|
4.6
|
1.0
|
1.0
|
CAC
|
B:KN3601
|
4.6
|
40.4
|
0.5
|
NAH
|
B:KN3601
|
4.7
|
40.9
|
0.5
|
CG
|
B:HIS524
|
4.8
|
48.8
|
0.7
|
CAB
|
B:KN3601
|
4.8
|
44.5
|
0.5
|
CE1
|
B:HIS524
|
4.8
|
53.2
|
0.7
|
CB
|
B:HIS524
|
4.8
|
40.8
|
0.7
|
CAM
|
B:KN3601
|
4.8
|
42.9
|
0.5
|
O
|
B:GLY521
|
4.9
|
30.2
|
0.8
|
CAG
|
B:KN3601
|
4.9
|
40.0
|
0.5
|
HAOA
|
B:KN3601
|
4.9
|
0.7
|
0.5
|
HANA
|
B:KN3601
|
5.0
|
0.5
|
0.5
|
|
Reference:
S.Srinivasan,
J.C.Nwachukwu,
A.A.Parent,
V.Cavett,
J.Nowak,
T.S.Hughes,
D.J.Kojetin,
J.A.Katzenellenbogen,
K.W.Nettles.
Ligand Binding Dynamics Rewire Cellular Signaling Via Estrogen Receptor-Alpha Nat.Chem.Biol. V. 9 326 2013.
ISSN: ISSN 1552-4450
PubMed: 23524984
DOI: 10.1038/NCHEMBIO.1214
Page generated: Thu Aug 1 02:39:49 2024
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