Atomistry » Fluorine » PDB 4j0v-4jps » 4j6a
Atomistry »
  Fluorine »
    PDB 4j0v-4jps »
      4j6a »

Fluorine in PDB 4j6a: Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set

Enzymatic activity of Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set

All present enzymatic activity of Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set:
3.1.27.5;

Protein crystallography data

The structure of Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set, PDB code: 4j6a was solved by B.M.Kearney, M.Dechene, P.D.Swartz, C.Mattos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.71 / 2.04
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 63.579, 63.579, 63.903, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 20.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set (pdb code 4j6a). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set, PDB code: 4j6a:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 4j6a

Go back to Fluorine Binding Sites List in 4j6a
Fluorine binding site 1 out of 6 in the Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:51.3
occ:1.00
F1 A:ETF202 0.0 51.3 1.0
C1 A:ETF202 1.3 43.7 1.0
F3 A:ETF202 2.2 41.7 1.0
F2 A:ETF202 2.2 52.2 1.0
C2 A:ETF202 2.3 47.2 1.0
O A:ETF202 3.5 45.2 1.0

Fluorine binding site 2 out of 6 in 4j6a

Go back to Fluorine Binding Sites List in 4j6a
Fluorine binding site 2 out of 6 in the Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:52.2
occ:1.00
F2 A:ETF202 0.0 52.2 1.0
C1 A:ETF202 1.3 43.7 1.0
F3 A:ETF202 2.1 41.7 1.0
F1 A:ETF202 2.2 51.3 1.0
C2 A:ETF202 2.3 47.2 1.0
O A:ETF202 2.7 45.2 1.0
OG A:SER23 3.8 33.1 1.0
CB A:SER23 4.3 31.7 1.0

Fluorine binding site 3 out of 6 in 4j6a

Go back to Fluorine Binding Sites List in 4j6a
Fluorine binding site 3 out of 6 in the Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:41.7
occ:1.00
F3 A:ETF202 0.0 41.7 1.0
C1 A:ETF202 1.3 43.7 1.0
F2 A:ETF202 2.1 52.2 1.0
F1 A:ETF202 2.2 51.3 1.0
C2 A:ETF202 2.3 47.2 1.0
O A:ETF202 2.8 45.2 1.0
F2 A:ETF205 3.7 48.3 1.0
CB A:SER23 3.9 31.7 1.0
OG A:SER23 4.1 33.1 1.0
N A:SER23 4.3 27.1 1.0
CA A:SER23 4.6 27.0 1.0
C1 A:ETF205 4.8 47.2 1.0
F3 A:ETF205 4.8 45.8 1.0

Fluorine binding site 4 out of 6 in 4j6a

Go back to Fluorine Binding Sites List in 4j6a
Fluorine binding site 4 out of 6 in the Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F205

b:51.6
occ:1.00
F1 A:ETF205 0.0 51.6 1.0
C1 A:ETF205 1.3 47.2 1.0
F2 A:ETF205 2.2 48.3 1.0
F3 A:ETF205 2.2 45.8 1.0
C2 A:ETF205 2.3 38.4 1.0
O A:SER21 3.4 43.7 1.0
CA A:SER22 3.4 33.5 1.0
N A:SER22 3.4 34.5 1.0
C A:SER21 3.4 38.4 1.0
O A:ETF205 3.5 40.7 1.0
O A:ALA20 3.6 30.7 1.0
C A:SER22 3.8 31.6 1.0
O A:SER22 4.2 24.6 1.0
C A:ALA20 4.3 26.9 1.0
CA A:SER21 4.3 37.1 1.0
N A:SER23 4.3 27.1 1.0
N A:SER21 4.6 33.0 1.0
CB A:SER22 4.8 30.8 1.0
C2 A:ETF202 4.8 47.2 1.0

Fluorine binding site 5 out of 6 in 4j6a

Go back to Fluorine Binding Sites List in 4j6a
Fluorine binding site 5 out of 6 in the Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F205

b:48.3
occ:1.00
F2 A:ETF205 0.0 48.3 1.0
C1 A:ETF205 1.3 47.2 1.0
F3 A:ETF205 2.2 45.8 1.0
F1 A:ETF205 2.2 51.6 1.0
C2 A:ETF205 2.3 38.4 1.0
O A:ETF205 2.7 40.7 1.0
N A:SER23 3.1 27.1 1.0
C A:SER22 3.1 31.6 1.0
CA A:SER22 3.6 33.5 1.0
O A:SER22 3.6 24.6 1.0
F3 A:ETF202 3.7 41.7 1.0
CA A:SER23 3.7 27.0 1.0
O A:ETF202 3.9 45.2 1.0
C2 A:ETF202 4.0 47.2 1.0
N A:SER22 4.2 34.5 1.0
CB A:SER23 4.3 31.7 1.0
C1 A:ETF202 4.5 43.7 1.0
C A:SER21 4.8 38.4 1.0
O A:SER21 4.9 43.7 1.0
CB A:SER22 4.9 30.8 1.0

Fluorine binding site 6 out of 6 in 4j6a

Go back to Fluorine Binding Sites List in 4j6a
Fluorine binding site 6 out of 6 in the Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Ribonuclease A Soaked in 40% 2,2,2- Trifluoroethanol: One of Twelve in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F205

b:45.8
occ:1.00
F3 A:ETF205 0.0 45.8 1.0
C1 A:ETF205 1.3 47.2 1.0
F2 A:ETF205 2.2 48.3 1.0
F1 A:ETF205 2.2 51.6 1.0
C2 A:ETF205 2.3 38.4 1.0
O A:ETF205 2.6 40.7 1.0
O A:HOH318 4.3 31.8 1.0
F3 A:ETF202 4.8 41.7 1.0
O A:ALA20 4.9 30.7 1.0

Reference:

B.M.Kearney, D.Roberts, M.Dechene, P.D.Swartz, C.Mattos. Drop: A Program For Analysis of Water Structure on Protein Surfaces To Be Published.
Page generated: Sun Dec 13 12:05:14 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy