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Fluorine in PDB 4juo: A Low-Resolution Three-Gate Structure of Topoisomerase IV From Streptococcus Pneumoniae in Space Group H32

Enzymatic activity of A Low-Resolution Three-Gate Structure of Topoisomerase IV From Streptococcus Pneumoniae in Space Group H32

All present enzymatic activity of A Low-Resolution Three-Gate Structure of Topoisomerase IV From Streptococcus Pneumoniae in Space Group H32:
5.99.1.3;

Protein crystallography data

The structure of A Low-Resolution Three-Gate Structure of Topoisomerase IV From Streptococcus Pneumoniae in Space Group H32, PDB code: 4juo was solved by I.Laponogov, D.A.Veselkov, X.-S.Pan, I.Crevel, L.M.Fisher, M.R.Sanderson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.44 / 6.53
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 213.580, 213.580, 211.830, 90.00, 90.00, 120.00
R / Rfree (%) 24.7 / 29.8

Other elements in 4juo:

The structure of A Low-Resolution Three-Gate Structure of Topoisomerase IV From Streptococcus Pneumoniae in Space Group H32 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the A Low-Resolution Three-Gate Structure of Topoisomerase IV From Streptococcus Pneumoniae in Space Group H32 (pdb code 4juo). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the A Low-Resolution Three-Gate Structure of Topoisomerase IV From Streptococcus Pneumoniae in Space Group H32, PDB code: 4juo:

Fluorine binding site 1 out of 1 in 4juo

Go back to Fluorine Binding Sites List in 4juo
Fluorine binding site 1 out of 1 in the A Low-Resolution Three-Gate Structure of Topoisomerase IV From Streptococcus Pneumoniae in Space Group H32


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of A Low-Resolution Three-Gate Structure of Topoisomerase IV From Streptococcus Pneumoniae in Space Group H32 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F101

b:0.4
occ:1.00
 F F:LFX101 0.0 0.4 1.0
C11 F:LFX101 1.4 0.4 1.0
H01 F:LFX101 2.2 0.6 1.0
C04 F:LFX101 2.3 89.4 1.0
C13 F:LFX101 2.3 0.3 1.0
H13 F:LFX101 2.5 0.6 1.0
H01A F:LFX101 2.5 0.6 1.0
C01 F:LFX101 2.6 0.8 1.0
N3 H:DT4 2.7 97.6 0.5
N01 F:LFX101 2.8 95.5 1.0
C2 H:DT4 2.8 84.4 0.5
C2 F:DC4 3.0 86.3 0.5
N1 F:DC4 3.1 86.5 0.5
C4 H:DT4 3.2 0.4 0.5
N3 F:DC4 3.2 0.5 0.5
N7 F:DA5 3.2 88.2 0.5
O2 H:DT4 3.2 78.9 0.5
N1 H:DT4 3.3 85.1 0.5
C6 F:DC4 3.3 93.6 0.5
C5 F:DA5 3.3 79.5 0.5
N7 H:DA5 3.3 86.8 0.5
C4 F:DC4 3.4 0.5 0.5
C5 F:DC4 3.5 99.5 0.5
C8 F:DA5 3.5 92.4 0.5
C5 H:DA5 3.5 78.3 0.5
C06 F:LFX101 3.6 75.2 1.0
O2 F:DC4 3.6 79.3 0.5
C10 F:LFX101 3.6 88.3 1.0
C5 H:DT4 3.6 97.3 0.5
C6 H:DT4 3.7 90.0 0.5
C4 F:DA5 3.7 78.5 0.5
C8 H:DA5 3.8 93.2 0.5
O4 H:DT4 3.8 0.7 0.5
N9 F:DA5 3.8 91.6 0.5
H02A F:LFX101 3.8 96.2 1.0
C6 F:DA5 3.9 72.4 0.5
C1' F:DC4 3.9 85.0 0.5
C02 F:LFX101 3.9 80.2 1.0
C2' F:DC4 3.9 86.6 0.5
C6 H:DA5 3.9 70.4 0.5
C4 H:DA5 4.0 78.8 0.5
C05 F:LFX101 4.1 81.8 1.0
C07 F:LFX101 4.1 0.4 1.0
N4 F:DC4 4.2 0.6 0.5
N9 H:DA5 4.2 97.0 0.5
C1' H:DT4 4.2 82.6 0.5
C2' H:DT4 4.2 87.1 0.5
N6 F:DA5 4.2 78.4 0.5
N6 H:DA5 4.2 74.8 0.5
H07A F:LFX101 4.4 0.1 1.0
H02 F:LFX101 4.4 96.2 1.0
N3 F:DA5 4.5 65.9 0.5
O4' F:DA5 4.6 0.1 0.5
N1 F:DA5 4.6 61.1 0.5
O01 F:LFX101 4.6 63.8 1.0
H07 F:LFX101 4.7 0.1 1.0
N1 H:DA5 4.7 61.8 0.5
N F:LFX101 4.8 0.9 1.0
C7 H:DT4 4.8 97.2 0.5
C1' F:DA5 4.8 0.6 0.5
C2 F:DA5 4.8 60.4 0.5
N3 H:DA5 4.9 63.4 0.5
C15 F:LFX101 4.9 77.0 1.0
C08 F:LFX101 4.9 86.1 1.0
O4' H:DA5 5.0 0.5 0.5

Reference:

I.Laponogov, D.A.Veselkov, I.M.Crevel, X.S.Pan, L.M.Fisher, M.R.Sanderson. Structure of An 'Open' Clamp Type II Topoisomerase-Dna Complex Provides A Mechanism For Dna Capture and Transport. Nucleic Acids Res. V. 41 9911 2013.
ISSN: ISSN 0305-1048
PubMed: 23965305
DOI: 10.1093/NAR/GKT749
Page generated: Thu Aug 1 03:00:41 2024

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