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Fluorine in PDB 4ovz: X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases

Enzymatic activity of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases

All present enzymatic activity of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases:
3.4.19.12; 3.4.22.69;

Protein crystallography data

The structure of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases, PDB code: 4ovz was solved by Y.M.Baez-Santos, A.Mesecar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.75 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 119.772, 73.508, 98.269, 90.00, 103.66, 90.00
R / Rfree (%) 18.2 / 24.3

Other elements in 4ovz:

The structure of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Sodium (Na) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases (pdb code 4ovz). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases, PDB code: 4ovz:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 4ovz

Go back to Fluorine Binding Sites List in 4ovz
Fluorine binding site 1 out of 2 in the X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F902

b:25.7
occ:1.00
F55 A:P85902 0.0 25.7 1.0
C26 A:P85902 1.3 30.0 1.0
HA2 B:GLY210 2.4 17.4 1.0
C27 A:P85902 2.4 21.7 1.0
C25 A:P85902 2.4 23.9 1.0
H251 A:P85902 2.6 28.6 1.0
H271 A:P85902 2.6 26.0 1.0
HD3 B:PRO248 2.7 17.4 1.0
HD2 B:PRO248 3.0 17.4 1.0
HG3 A:GLN270 3.1 42.0 1.0
HA B:ALA247 3.1 17.7 1.0
CA B:GLY210 3.2 14.5 1.0
CD B:PRO248 3.3 14.6 1.0
N B:GLY210 3.4 16.3 1.0
H B:GLY210 3.5 19.6 1.0
SD B:MET209 3.6 41.5 1.0
C28 A:P85902 3.6 25.2 1.0
C24 A:P85902 3.7 15.2 1.0
HA3 B:GLY210 3.8 17.4 1.0
HG2 A:GLN270 3.8 42.0 1.0
CG A:GLN270 3.9 35.0 1.0
C B:MET209 4.0 13.6 1.0
CA B:ALA247 4.1 14.8 1.0
C23 A:P85902 4.2 22.9 1.0
C B:GLY210 4.2 15.9 1.0
HG2 B:PRO248 4.2 19.8 1.0
CG B:PRO248 4.3 16.5 1.0
HA A:GLN270 4.3 27.7 1.0
HG3 B:MET209 4.3 36.3 1.0
HB1 B:ALA247 4.4 13.7 1.0
H281 A:P85902 4.4 30.2 1.0
HE21 A:GLN270 4.4 41.7 1.0
N B:PRO248 4.4 11.2 1.0
HD2 A:TYR269 4.4 19.2 1.0
HG3 B:PRO248 4.5 19.8 1.0
CG B:MET209 4.5 30.3 1.0
H241 A:P85902 4.5 18.3 1.0
O B:MET209 4.5 15.3 1.0
HB3 B:MET209 4.5 19.5 1.0
O B:GLY210 4.5 20.7 1.0
O B:SER246 4.6 17.3 1.0
CB B:ALA247 4.6 11.4 1.0
HB2 B:ALA247 4.7 13.7 1.0
CE B:MET209 4.7 29.3 1.0
HA B:MET209 4.7 14.6 1.0
HE2 B:MET209 4.7 35.1 1.0
HE3 B:MET209 4.7 35.1 1.0
HE2 A:TYR269 4.8 23.1 1.0
CA B:MET209 4.8 12.2 1.0
C B:ALA247 4.8 12.9 1.0
CD A:GLN270 4.8 43.2 1.0
CB B:MET209 4.8 16.3 1.0
NE2 A:GLN270 4.9 34.8 1.0
CB A:GLN270 4.9 29.3 1.0
HB3 A:GLN270 4.9 35.1 1.0

Fluorine binding site 2 out of 2 in 4ovz

Go back to Fluorine Binding Sites List in 4ovz
Fluorine binding site 2 out of 2 in the X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F902

b:27.9
occ:1.00
F55 B:P85902 0.0 27.9 1.0
C26 B:P85902 1.3 32.2 1.0
C27 B:P85902 2.4 30.2 1.0
HA2 A:GLY210 2.4 23.6 1.0
C25 B:P85902 2.4 34.1 1.0
HD3 A:PRO248 2.7 15.9 1.0
HG3 A:MET209 2.8 36.8 1.0
HG3 B:GLN270 3.3 34.0 1.0
CA A:GLY210 3.3 19.7 1.0
CD A:PRO248 3.5 13.3 1.0
HA A:ALA247 3.6 21.5 1.0
HD2 A:PRO248 3.6 15.9 1.0
CG A:MET209 3.6 30.7 1.0
C28 B:P85902 3.7 32.5 1.0
N A:GLY210 3.7 20.1 1.0
C24 B:P85902 3.7 31.0 1.0
HA3 A:GLY210 3.7 23.6 1.0
SD A:MET209 3.8 38.7 1.0
HG2 A:MET209 4.0 36.8 1.0
H A:GLY210 4.0 24.1 1.0
HG2 B:GLN270 4.0 34.0 1.0
HG3 A:PRO248 4.1 16.7 1.0
CG B:GLN270 4.1 28.3 1.0
C A:MET209 4.1 18.5 1.0
CG A:PRO248 4.2 13.9 1.0
C23 B:P85902 4.2 28.2 1.0
HG2 A:PRO248 4.2 16.7 1.0
C A:GLY210 4.3 21.6 1.0
O A:MET209 4.3 21.0 1.0
HB1 A:ALA247 4.4 17.1 1.0
HA B:GLN270 4.4 27.1 1.0
CA A:ALA247 4.5 17.9 1.0
HE21 B:GLN270 4.6 31.8 1.0
HD1 B:TYR269 4.6 17.2 1.0
O A:GLY210 4.6 15.1 1.0
N A:PRO248 4.6 11.0 1.0
HE1 B:TYR269 4.7 16.0 1.0
HB2 A:ALA247 4.8 17.1 1.0
CB A:ALA247 4.8 14.2 1.0
CB A:MET209 4.8 21.5 1.0
HE3 A:MET209 4.9 41.5 1.0
HB3 B:GLN270 4.9 28.5 1.0
O A:SER246 4.9 19.0 1.0
CB B:GLN270 5.0 23.7 1.0
CA A:MET209 5.0 16.9 1.0

Reference:

Y.M.Baez-Santos, S.J.Barraza, M.W.Wilson, M.P.Agius, A.M.Mielech, N.M.Davis, S.C.Baker, S.D.Larsen, A.D.Mesecar. X-Ray Structural and Biological Evaluation of A Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases. J.Med.Chem. V. 57 2393 2014.
ISSN: ISSN 1520-4804
PubMed: 24568342
DOI: 10.1021/JM401712T
Page generated: Thu Aug 1 04:41:30 2024

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