Atomistry » Fluorine » PDB 4olm-4pa0 » 4owo
Atomistry »
  Fluorine »
    PDB 4olm-4pa0 »
      4owo »

Fluorine in PDB 4owo: Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium

Enzymatic activity of Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium

All present enzymatic activity of Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium:
2.4.2.18;

Protein crystallography data

The structure of Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium, PDB code: 4owo was solved by A.Castell, T.V.M.Cookson, F.L.Short, J.S.Lott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 73.35 / 1.99
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.409, 92.099, 121.294, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 19.4

Other elements in 4owo:

The structure of Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium (pdb code 4owo). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium, PDB code: 4owo:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 4owo

Go back to Fluorine Binding Sites List in 4owo
Fluorine binding site 1 out of 4 in the Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:41.4
occ:1.00
 FAD A:6F0404 0.0 41.4 1.0
CAJ A:6F0404 1.3 39.6 1.0
CAG A:6F0404 2.3 38.9 1.0
CAK A:6F0404 2.4 40.5 1.0
OAB A:6F0404 2.6 40.9 1.0
CAH A:6F0404 2.9 42.4 1.0
O A:HIS183 3.0 15.4 1.0
O A:HOH672 3.2 33.6 1.0
CAE A:6F0404 3.6 36.6 1.0
CAI A:6F0404 3.7 38.1 1.0
N A:ARG187 3.7 20.4 1.0
C A:HIS183 3.9 16.2 1.0
CA A:ARG187 3.9 22.4 1.0
CA A:PRO180 4.0 21.3 1.0
C A:TYR186 4.0 18.8 1.0
O A:PRO184 4.1 18.0 1.0
CB A:TYR186 4.1 17.7 1.0
OAC A:6F0404 4.1 42.8 1.0
CAF A:6F0404 4.1 37.7 1.0
CA A:PRO184 4.2 18.1 1.0
CB A:ARG187 4.2 24.6 1.0
O A:PRO180 4.3 21.7 1.0
C A:PRO184 4.3 18.1 1.0
CA A:TYR186 4.4 17.8 1.0
CB A:PRO180 4.5 22.1 1.0
N A:TYR186 4.5 17.5 1.0
N A:PRO184 4.5 17.4 1.0
O A:TYR186 4.5 18.6 1.0
O A:HOH683 4.6 38.0 1.0
C A:PRO180 4.6 21.4 1.0
CD2 A:TYR186 4.7 19.0 1.0
NAA A:6F0404 4.8 38.3 1.0
CB A:HIS183 4.8 15.6 1.0
CB A:ALA190 4.8 20.0 1.0
O A:ALA179 4.9 20.2 1.0
N A:PRO180 4.9 20.7 1.0
CA A:HIS183 4.9 16.1 1.0
CG A:TYR186 4.9 17.7 1.0

Fluorine binding site 2 out of 4 in 4owo

Go back to Fluorine Binding Sites List in 4owo
Fluorine binding site 2 out of 4 in the Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F405

b:22.9
occ:1.00
 FAD A:6F0405 0.0 22.9 1.0
CAJ A:6F0405 1.3 22.6 1.0
CAG A:6F0405 2.4 22.2 1.0
CAK A:6F0405 2.4 22.3 1.0
OAB A:6F0405 2.7 20.2 1.0
CAH A:6F0405 2.8 23.0 1.0
CB A:ALA179 3.1 19.8 1.0
ND2 A:ASN138 3.4 20.7 1.0
CAE A:6F0405 3.6 22.4 1.0
CAI A:6F0405 3.6 22.4 1.0
CB A:ASN138 3.7 22.0 1.0
OAC A:6F0405 4.0 22.1 1.0
CG A:ASN138 4.0 22.6 1.0
CAF A:6F0404 4.1 37.7 1.0
CAF A:6F0405 4.1 22.9 1.0
CA A:GLY206 4.2 18.2 1.0
CAE A:6F0404 4.3 36.6 1.0
O A:GLY137 4.5 20.7 1.0
CA A:ALA179 4.6 19.7 1.0
CE1 A:HIS136 4.7 18.6 1.0
NE2 A:HIS136 4.7 19.2 1.0
NAA A:6F0405 4.7 23.0 1.0
C A:GLY137 4.8 21.2 1.0
CA A:ASN138 4.9 22.2 1.0

Fluorine binding site 3 out of 4 in 4owo

Go back to Fluorine Binding Sites List in 4owo
Fluorine binding site 3 out of 4 in the Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F404

b:33.5
occ:1.00
 FAD B:6F0404 0.0 33.5 1.0
CAJ B:6F0404 1.4 32.7 1.0
CAG B:6F0404 2.4 32.1 1.0
CAK B:6F0404 2.4 32.6 1.0
OAC B:6F0404 2.5 32.5 1.0
CAH B:6F0404 2.8 33.0 1.0
O B:HIS183 3.0 16.4 1.0
CAE B:6F0404 3.7 31.1 1.0
CAI B:6F0404 3.7 31.7 1.0
N B:ARG187 3.8 20.2 1.0
CA B:ARG187 3.9 22.2 1.0
C B:HIS183 4.0 16.4 1.0
CA B:PRO180 4.0 20.5 1.0
C B:TYR186 4.1 18.3 1.0
OAB B:6F0404 4.1 32.1 1.0
O B:PRO184 4.1 18.1 1.0
CAF B:6F0404 4.2 32.5 1.0
CB B:ARG187 4.2 23.9 1.0
CB B:TYR186 4.2 17.6 1.0
CA B:PRO184 4.3 17.9 1.0
O B:PRO180 4.4 20.2 1.0
C B:PRO184 4.4 18.2 1.0
CB B:PRO180 4.5 21.4 1.0
O B:TYR186 4.5 16.9 1.0
CA B:TYR186 4.5 17.6 1.0
N B:PRO184 4.5 16.9 1.0
O B:HOH614 4.6 35.8 1.0
N B:TYR186 4.6 18.1 1.0
CD2 B:TYR186 4.7 18.1 1.0
C B:PRO180 4.7 20.7 1.0
NAA B:6F0404 4.8 31.7 1.0
CB B:HIS183 4.8 15.1 1.0
CB B:ALA190 4.8 19.1 1.0
N B:PRO180 4.9 19.9 1.0
O B:ALA179 4.9 19.6 1.0
CA B:HIS183 5.0 15.5 1.0
CG B:TYR186 5.0 17.8 1.0
CG B:PRO180 5.0 21.1 1.0

Fluorine binding site 4 out of 4 in 4owo

Go back to Fluorine Binding Sites List in 4owo
Fluorine binding site 4 out of 4 in the Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Anthranilate Phosphoribosyl Transferase From Mycobacterium Tuberculosis in Complex with 6-Fluoroanthranilate, Prpp and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F405

b:24.4
occ:1.00
 FAD B:6F0405 0.0 24.4 1.0
CAJ B:6F0405 1.4 25.9 1.0
CAG B:6F0405 2.4 24.7 1.0
CAK B:6F0405 2.4 25.0 1.0
OAC B:6F0405 2.7 25.2 1.0
CAH B:6F0405 2.8 26.4 1.0
CB B:ALA179 3.0 19.3 1.0
ND2 B:ASN138 3.5 23.2 1.0
CAE B:6F0405 3.6 24.7 1.0
CAI B:6F0405 3.7 26.2 1.0
CAF B:6F0404 3.7 32.5 1.0
CAE B:6F0404 3.9 31.1 1.0
OAB B:6F0405 3.9 24.2 1.0
CB B:ASN138 4.0 22.1 1.0
CA B:GLY206 4.1 19.6 1.0
CAF B:6F0405 4.1 25.9 1.0
CG B:ASN138 4.2 22.3 1.0
CA B:ALA179 4.6 19.3 1.0
O B:GLY137 4.6 20.4 1.0
CE1 B:HIS136 4.7 16.2 1.0
NAA B:6F0405 4.8 26.8 1.0
NE2 B:HIS136 4.8 17.0 1.0
O B:HOH620 5.0 31.2 1.0
C B:GLY137 5.0 20.9 1.0

Reference:

T.V.Cookson, A.Castell, E.M.Bulloch, G.L.Evans, F.L.Short, E.N.Baker, J.S.Lott, E.J.Parker. Alternative Substrates Reveal Catalytic Cycle and Key Binding Events in the Reaction Catalysed By Anthranilate Phosphoribosyltransferase From Mycobacterium Tuberculosis. Biochem.J. V. 461 87 2014.
ISSN: ESSN 1470-8728
PubMed: 24712732
DOI: 10.1042/BJ20140209
Page generated: Thu Aug 1 04:43:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy