Fluorine in PDB 4uaa: Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Protein crystallography data
The structure of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution, PDB code: 4uaa
was solved by
D.A.Nichols,
Y.Chen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
0.86
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
44.968,
106.692,
47.664,
90.00,
102.08,
90.00
|
R / Rfree (%)
|
12.1 /
13.4
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
(pdb code 4uaa). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution, PDB code: 4uaa:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 4uaa
Go back to
Fluorine Binding Sites List in 4uaa
Fluorine binding site 1 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:13.1
occ:1.00
|
F27
|
A:3GK301
|
0.0
|
13.1
|
1.0
|
C24
|
A:3GK301
|
1.4
|
10.0
|
1.0
|
F26
|
A:3GK301
|
2.1
|
10.3
|
1.0
|
F25
|
A:3GK301
|
2.1
|
16.3
|
1.0
|
C19
|
A:3GK301
|
2.4
|
8.8
|
1.0
|
HG22
|
A:THR171
|
2.9
|
12.4
|
1.0
|
HA
|
A:THR168
|
3.0
|
8.7
|
1.0
|
HG23
|
A:THR171
|
3.0
|
12.4
|
1.0
|
HA
|
A:THR171
|
3.1
|
8.4
|
1.0
|
C20
|
A:3GK301
|
3.1
|
8.1
|
1.0
|
C18
|
A:3GK301
|
3.2
|
8.9
|
1.0
|
O
|
A:PRO167
|
3.2
|
7.3
|
1.0
|
HB2
|
A:ASN170
|
3.2
|
8.7
|
1.0
|
N
|
A:THR171
|
3.4
|
6.8
|
1.0
|
CG2
|
A:THR171
|
3.4
|
8.3
|
1.0
|
C
|
A:ASN170
|
3.5
|
6.8
|
1.0
|
H
|
A:THR171
|
3.6
|
8.2
|
1.0
|
CA
|
A:THR171
|
3.7
|
7.0
|
1.0
|
H
|
A:ASN170
|
3.7
|
8.0
|
1.0
|
O
|
A:ASN170
|
3.9
|
7.2
|
1.0
|
CA
|
A:THR168
|
3.9
|
7.2
|
1.0
|
CB
|
A:ASN170
|
4.0
|
7.2
|
1.0
|
C
|
A:PRO167
|
4.1
|
6.8
|
1.0
|
O
|
A:THR168
|
4.1
|
7.5
|
1.0
|
CA
|
A:ASN170
|
4.1
|
6.7
|
1.0
|
CB
|
A:THR171
|
4.2
|
7.3
|
1.0
|
N
|
A:ASN170
|
4.2
|
6.6
|
1.0
|
HB2
|
A:PRO167
|
4.2
|
9.9
|
1.0
|
HG21
|
A:THR171
|
4.2
|
12.4
|
1.0
|
C
|
A:THR168
|
4.2
|
6.9
|
1.0
|
C17
|
A:3GK301
|
4.4
|
8.2
|
1.0
|
HD22
|
A:ASN170
|
4.4
|
9.9
|
1.0
|
C15
|
A:3GK301
|
4.4
|
7.6
|
1.0
|
N
|
A:THR168
|
4.4
|
6.8
|
1.0
|
HB3
|
A:ASN170
|
4.5
|
8.7
|
1.0
|
HG23
|
A:THR168
|
4.6
|
13.0
|
1.0
|
HG2
|
A:PRO167
|
4.8
|
10.4
|
1.0
|
HB
|
A:THR171
|
4.8
|
8.8
|
1.0
|
C16
|
A:3GK301
|
4.9
|
7.6
|
1.0
|
O
|
A:HOH468
|
4.9
|
14.8
|
1.0
|
HB
|
A:THR168
|
4.9
|
9.2
|
1.0
|
CB
|
A:THR168
|
5.0
|
7.7
|
1.0
|
CB
|
A:PRO167
|
5.0
|
8.2
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 4uaa
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Fluorine Binding Sites List in 4uaa
Fluorine binding site 2 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:16.3
occ:1.00
|
F25
|
A:3GK301
|
0.0
|
16.3
|
1.0
|
C24
|
A:3GK301
|
1.3
|
10.0
|
1.0
|
F26
|
A:3GK301
|
2.1
|
10.3
|
1.0
|
F27
|
A:3GK301
|
2.1
|
13.1
|
1.0
|
C19
|
A:3GK301
|
2.3
|
8.8
|
1.0
|
C18
|
A:3GK301
|
2.7
|
8.9
|
1.0
|
O
|
A:HOH468
|
3.1
|
14.8
|
1.0
|
HG23
|
A:THR171
|
3.6
|
12.4
|
1.0
|
C20
|
A:3GK301
|
3.6
|
8.1
|
1.0
|
O
|
A:HOH539
|
3.6
|
17.5
|
1.0
|
C17
|
A:3GK301
|
4.1
|
8.2
|
1.0
|
HA
|
A:THR171
|
4.2
|
8.4
|
1.0
|
OD2
|
A:ASP240
|
4.2
|
10.6
|
1.0
|
HG22
|
A:THR171
|
4.3
|
12.4
|
1.0
|
CG2
|
A:THR171
|
4.4
|
8.3
|
1.0
|
HA
|
A:THR168
|
4.5
|
8.7
|
1.0
|
CG
|
A:ASP240
|
4.8
|
8.5
|
1.0
|
HB2
|
A:PRO167
|
4.8
|
9.9
|
1.0
|
C15
|
A:3GK301
|
4.8
|
7.6
|
1.0
|
O
|
A:HOH501
|
4.8
|
14.1
|
1.0
|
O
|
A:PRO167
|
4.9
|
7.3
|
1.0
|
HB2
|
A:ASN170
|
4.9
|
8.7
|
1.0
|
N5
|
A:3GK302
|
4.9
|
10.3
|
0.8
|
C16
|
A:3GK301
|
5.0
|
7.6
|
1.0
|
OD1
|
A:ASP240
|
5.0
|
9.2
|
1.0
|
HG21
|
A:THR171
|
5.0
|
12.4
|
1.0
|
CA
|
A:THR171
|
5.0
|
7.0
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 4uaa
Go back to
Fluorine Binding Sites List in 4uaa
Fluorine binding site 3 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:10.3
occ:1.00
|
F26
|
A:3GK301
|
0.0
|
10.3
|
1.0
|
C24
|
A:3GK301
|
1.3
|
10.0
|
1.0
|
F27
|
A:3GK301
|
2.1
|
13.1
|
1.0
|
F25
|
A:3GK301
|
2.1
|
16.3
|
1.0
|
C19
|
A:3GK301
|
2.3
|
8.8
|
1.0
|
HB2
|
A:PRO167
|
2.7
|
9.9
|
1.0
|
C20
|
A:3GK301
|
2.8
|
8.1
|
1.0
|
O
|
A:PRO167
|
3.2
|
7.3
|
1.0
|
HG2
|
A:PRO167
|
3.2
|
10.4
|
1.0
|
HA
|
A:THR168
|
3.4
|
8.7
|
1.0
|
CB
|
A:PRO167
|
3.5
|
8.2
|
1.0
|
C18
|
A:3GK301
|
3.6
|
8.9
|
1.0
|
C
|
A:PRO167
|
3.6
|
6.8
|
1.0
|
CG
|
A:PRO167
|
3.7
|
8.7
|
1.0
|
HG3
|
A:PRO167
|
4.1
|
10.4
|
1.0
|
O
|
A:HOH501
|
4.1
|
14.1
|
1.0
|
HB2
|
A:ASN170
|
4.2
|
8.7
|
1.0
|
C15
|
A:3GK301
|
4.2
|
7.6
|
1.0
|
N
|
A:THR168
|
4.2
|
6.8
|
1.0
|
CA
|
A:PRO167
|
4.2
|
7.4
|
1.0
|
CA
|
A:THR168
|
4.2
|
7.2
|
1.0
|
HB3
|
A:PRO167
|
4.2
|
9.9
|
1.0
|
HG23
|
A:THR168
|
4.3
|
13.0
|
1.0
|
HD21
|
A:ASN104
|
4.3
|
10.7
|
1.0
|
HD22
|
A:ASN104
|
4.4
|
10.7
|
1.0
|
HD22
|
A:ASN170
|
4.5
|
9.9
|
1.0
|
HG22
|
A:THR171
|
4.6
|
12.4
|
1.0
|
ND2
|
A:ASN104
|
4.6
|
8.9
|
1.0
|
HG23
|
A:THR171
|
4.6
|
12.4
|
1.0
|
C17
|
A:3GK301
|
4.7
|
8.2
|
1.0
|
H
|
A:ASN170
|
4.8
|
8.0
|
1.0
|
H
|
A:THR168
|
4.8
|
8.2
|
1.0
|
HA
|
A:PRO167
|
4.8
|
8.9
|
1.0
|
O14
|
A:3GK301
|
4.8
|
8.2
|
1.0
|
HG22
|
A:THR168
|
4.9
|
13.0
|
1.0
|
C16
|
A:3GK301
|
4.9
|
7.6
|
1.0
|
CG2
|
A:THR168
|
5.0
|
8.6
|
1.0
|
O
|
A:HOH539
|
5.0
|
17.5
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 4uaa
Go back to
Fluorine Binding Sites List in 4uaa
Fluorine binding site 4 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F302
b:15.6
occ:0.79
|
F27
|
A:3GK302
|
0.0
|
15.6
|
0.8
|
C24
|
A:3GK302
|
1.4
|
12.0
|
0.8
|
F26
|
A:3GK302
|
2.0
|
13.5
|
0.8
|
F25
|
A:3GK302
|
2.1
|
15.8
|
0.8
|
C19
|
A:3GK302
|
2.3
|
10.7
|
0.8
|
C18
|
A:3GK302
|
2.8
|
11.0
|
0.8
|
HB3
|
A:SER237
|
2.9
|
8.1
|
1.0
|
O
|
A:HOH605
|
3.2
|
8.7
|
1.0
|
HD3
|
A:ARG276
|
3.2
|
9.4
|
1.0
|
HB2
|
A:SER274
|
3.4
|
15.5
|
1.0
|
C20
|
A:3GK302
|
3.4
|
9.8
|
0.8
|
OG
|
A:SER237
|
3.5
|
7.0
|
1.0
|
CB
|
A:SER237
|
3.5
|
6.8
|
1.0
|
HB2
|
A:SER237
|
3.6
|
8.1
|
1.0
|
HB3
|
A:SER274
|
3.7
|
15.5
|
1.0
|
HG22
|
A:THR244
|
3.7
|
11.3
|
1.0
|
HG3
|
A:ARG276
|
3.8
|
9.1
|
1.0
|
CB
|
A:SER274
|
3.8
|
12.9
|
1.0
|
OG
|
A:SER274
|
3.9
|
14.6
|
1.0
|
CD
|
A:ARG276
|
4.0
|
7.9
|
1.0
|
C17
|
A:3GK302
|
4.1
|
11.2
|
0.8
|
NE
|
A:ARG276
|
4.2
|
9.1
|
1.0
|
N1
|
A:3GK301
|
4.3
|
6.6
|
1.0
|
N2
|
A:3GK301
|
4.3
|
6.5
|
1.0
|
CG
|
A:ARG276
|
4.3
|
7.6
|
1.0
|
HE
|
A:ARG276
|
4.4
|
10.9
|
1.0
|
HG2
|
A:ARG276
|
4.4
|
9.1
|
1.0
|
CZ
|
A:ARG276
|
4.5
|
10.3
|
1.0
|
HH12
|
A:ARG276
|
4.5
|
12.8
|
1.0
|
C15
|
A:3GK302
|
4.6
|
9.7
|
0.8
|
CG2
|
A:THR244
|
4.6
|
7.5
|
1.0
|
O
|
A:HOH499
|
4.6
|
10.9
|
1.0
|
NH1
|
A:ARG276
|
4.7
|
10.6
|
1.0
|
HD2
|
A:ARG276
|
4.8
|
9.4
|
1.0
|
C16
|
A:3GK302
|
4.8
|
10.7
|
0.8
|
O
|
A:HOH741
|
4.9
|
20.0
|
1.0
|
O
|
A:HOH424
|
4.9
|
10.1
|
1.0
|
HG21
|
A:THR244
|
4.9
|
11.3
|
1.0
|
CA
|
A:SER237
|
4.9
|
6.3
|
1.0
|
HA
|
A:THR244
|
4.9
|
7.2
|
1.0
|
O
|
A:HOH564
|
4.9
|
11.7
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 4uaa
Go back to
Fluorine Binding Sites List in 4uaa
Fluorine binding site 5 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F302
b:15.8
occ:0.79
|
F25
|
A:3GK302
|
0.0
|
15.8
|
0.8
|
C24
|
A:3GK302
|
1.3
|
12.0
|
0.8
|
F27
|
A:3GK302
|
2.1
|
15.6
|
0.8
|
F26
|
A:3GK302
|
2.2
|
13.5
|
0.8
|
C19
|
A:3GK302
|
2.3
|
10.7
|
0.8
|
C18
|
A:3GK302
|
2.9
|
11.0
|
0.8
|
OG
|
A:SER274
|
3.4
|
14.6
|
1.0
|
C20
|
A:3GK302
|
3.4
|
9.8
|
0.8
|
CZ
|
A:ARG276
|
3.4
|
10.3
|
1.0
|
NE
|
A:ARG276
|
3.6
|
9.1
|
1.0
|
NH2
|
A:ARG276
|
3.7
|
14.6
|
1.0
|
HD3
|
A:ARG276
|
3.7
|
9.4
|
1.0
|
HE
|
A:ARG276
|
3.7
|
10.9
|
1.0
|
HH22
|
A:ARG276
|
3.8
|
17.6
|
1.0
|
NH1
|
A:ARG276
|
3.8
|
10.6
|
1.0
|
HH21
|
A:ARG276
|
4.0
|
17.6
|
1.0
|
HB3
|
A:SER274
|
4.0
|
15.5
|
1.0
|
HB2
|
A:SER274
|
4.0
|
15.5
|
1.0
|
CB
|
A:SER274
|
4.1
|
12.9
|
1.0
|
HH12
|
A:ARG276
|
4.1
|
12.8
|
1.0
|
C17
|
A:3GK302
|
4.1
|
11.2
|
0.8
|
CD
|
A:ARG276
|
4.1
|
7.9
|
1.0
|
HH11
|
A:ARG276
|
4.2
|
12.8
|
1.0
|
O
|
A:HOH564
|
4.3
|
11.7
|
1.0
|
HG3
|
A:ARG276
|
4.3
|
9.1
|
1.0
|
O
|
A:HOH659
|
4.4
|
21.4
|
1.0
|
C15
|
A:3GK302
|
4.6
|
9.7
|
0.8
|
O
|
A:HOH605
|
4.7
|
8.7
|
1.0
|
CG
|
A:ARG276
|
4.8
|
7.6
|
1.0
|
C16
|
A:3GK302
|
4.9
|
10.7
|
0.8
|
O
|
A:HOH727
|
4.9
|
23.2
|
1.0
|
HB3
|
A:SER237
|
4.9
|
8.1
|
1.0
|
O
|
A:HOH499
|
4.9
|
10.9
|
1.0
|
HD2
|
A:ARG276
|
5.0
|
9.4
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 4uaa
Go back to
Fluorine Binding Sites List in 4uaa
Fluorine binding site 6 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F302
b:13.5
occ:0.79
|
F26
|
A:3GK302
|
0.0
|
13.5
|
0.8
|
C24
|
A:3GK302
|
1.3
|
12.0
|
0.8
|
F27
|
A:3GK302
|
2.0
|
15.6
|
0.8
|
F25
|
A:3GK302
|
2.2
|
15.8
|
0.8
|
C19
|
A:3GK302
|
2.3
|
10.7
|
0.8
|
C20
|
A:3GK302
|
2.8
|
9.8
|
0.8
|
HB3
|
A:SER274
|
2.9
|
15.5
|
1.0
|
O
|
A:HOH741
|
3.1
|
20.0
|
1.0
|
O
|
A:HOH727
|
3.2
|
23.2
|
1.0
|
OG
|
A:SER237
|
3.4
|
7.0
|
1.0
|
CB
|
A:SER274
|
3.4
|
12.9
|
1.0
|
OG
|
A:SER274
|
3.5
|
14.6
|
1.0
|
HB2
|
A:SER274
|
3.5
|
15.5
|
1.0
|
O
|
A:HOH424
|
3.5
|
10.1
|
1.0
|
HB2
|
A:SER237
|
3.5
|
8.1
|
1.0
|
C18
|
A:3GK302
|
3.6
|
11.0
|
0.8
|
HB3
|
A:SER237
|
3.7
|
8.1
|
1.0
|
CB
|
A:SER237
|
3.8
|
6.8
|
1.0
|
C15
|
A:3GK302
|
4.1
|
9.7
|
0.8
|
O
|
A:HOH535
|
4.4
|
9.7
|
1.0
|
O
|
A:HOH711
|
4.6
|
16.9
|
0.5
|
C17
|
A:3GK302
|
4.7
|
11.2
|
0.8
|
CA
|
A:SER274
|
4.9
|
10.4
|
1.0
|
H
|
A:SER274
|
4.9
|
12.0
|
1.0
|
C16
|
A:3GK302
|
4.9
|
10.7
|
0.8
|
O
|
A:HOH641
|
4.9
|
31.3
|
1.0
|
N12
|
A:3GK302
|
5.0
|
8.5
|
0.8
|
N2
|
A:3GK301
|
5.0
|
6.5
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 4uaa
Go back to
Fluorine Binding Sites List in 4uaa
Fluorine binding site 7 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:11.4
occ:1.00
|
F27
|
B:3GK301
|
0.0
|
11.4
|
1.0
|
C24
|
B:3GK301
|
1.3
|
10.3
|
1.0
|
F25
|
B:3GK301
|
2.1
|
12.4
|
1.0
|
F26
|
B:3GK301
|
2.1
|
14.1
|
1.0
|
C19
|
B:3GK301
|
2.4
|
9.4
|
1.0
|
HB2
|
B:PRO167
|
2.7
|
10.6
|
1.0
|
C20
|
B:3GK301
|
2.8
|
8.9
|
1.0
|
O
|
B:PRO167
|
3.2
|
8.0
|
1.0
|
HG2
|
B:PRO167
|
3.2
|
11.3
|
1.0
|
O
|
B:HOH757
|
3.3
|
12.1
|
0.3
|
HA
|
B:THR168
|
3.4
|
9.8
|
1.0
|
CB
|
B:PRO167
|
3.5
|
8.9
|
1.0
|
C18
|
B:3GK301
|
3.5
|
9.5
|
1.0
|
C
|
B:PRO167
|
3.6
|
7.7
|
1.0
|
CG
|
B:PRO167
|
3.8
|
9.4
|
1.0
|
HG3
|
B:PRO167
|
4.1
|
11.3
|
1.0
|
N
|
B:THR168
|
4.2
|
7.9
|
1.0
|
C15
|
B:3GK301
|
4.2
|
8.3
|
1.0
|
HB2
|
B:ASN170
|
4.2
|
10.0
|
1.0
|
CA
|
B:THR168
|
4.2
|
8.2
|
1.0
|
CA
|
B:PRO167
|
4.2
|
7.5
|
1.0
|
HB3
|
B:PRO167
|
4.3
|
10.6
|
1.0
|
HG23
|
B:THR168
|
4.3
|
14.4
|
1.0
|
HD21
|
B:ASN104
|
4.5
|
11.6
|
1.0
|
HG23
|
B:THR171
|
4.5
|
16.0
|
1.0
|
HG22
|
B:THR171
|
4.5
|
16.0
|
1.0
|
O
|
B:HOH510
|
4.5
|
17.0
|
1.0
|
HD22
|
B:ASN170
|
4.5
|
10.9
|
1.0
|
HD22
|
B:ASN104
|
4.6
|
11.6
|
1.0
|
C17
|
B:3GK301
|
4.7
|
9.1
|
1.0
|
ND2
|
B:ASN104
|
4.7
|
9.7
|
1.0
|
H
|
B:ASN170
|
4.8
|
9.6
|
1.0
|
H
|
B:THR168
|
4.8
|
9.5
|
1.0
|
HA
|
B:PRO167
|
4.8
|
9.0
|
1.0
|
O14
|
B:3GK301
|
4.9
|
8.7
|
1.0
|
O
|
B:HOH759
|
4.9
|
21.1
|
1.0
|
HG22
|
B:THR168
|
4.9
|
14.4
|
1.0
|
O
|
B:HOH757
|
4.9
|
12.3
|
0.7
|
CG2
|
B:THR168
|
5.0
|
9.6
|
1.0
|
O
|
B:HOH700
|
5.0
|
20.2
|
1.0
|
C16
|
B:3GK301
|
5.0
|
8.3
|
1.0
|
CG2
|
B:THR171
|
5.0
|
10.6
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 4uaa
Go back to
Fluorine Binding Sites List in 4uaa
Fluorine binding site 8 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:12.4
occ:1.00
|
F25
|
B:3GK301
|
0.0
|
12.4
|
1.0
|
C24
|
B:3GK301
|
1.4
|
10.3
|
1.0
|
F27
|
B:3GK301
|
2.1
|
11.4
|
1.0
|
F26
|
B:3GK301
|
2.2
|
14.1
|
1.0
|
C19
|
B:3GK301
|
2.4
|
9.4
|
1.0
|
HG22
|
B:THR171
|
2.9
|
16.0
|
1.0
|
HA
|
B:THR168
|
2.9
|
9.8
|
1.0
|
HG23
|
B:THR171
|
3.0
|
16.0
|
1.0
|
O
|
B:PRO167
|
3.0
|
8.0
|
1.0
|
HB2
|
B:ASN170
|
3.1
|
10.0
|
1.0
|
C20
|
B:3GK301
|
3.1
|
8.9
|
1.0
|
HA
|
B:THR171
|
3.2
|
10.8
|
1.0
|
C18
|
B:3GK301
|
3.2
|
9.5
|
1.0
|
N
|
B:THR171
|
3.3
|
8.3
|
1.0
|
CG2
|
B:THR171
|
3.4
|
10.6
|
1.0
|
C
|
B:ASN170
|
3.4
|
8.0
|
1.0
|
H
|
B:THR171
|
3.5
|
10.0
|
1.0
|
H
|
B:ASN170
|
3.5
|
9.6
|
1.0
|
CA
|
B:THR171
|
3.7
|
9.0
|
1.0
|
CA
|
B:THR168
|
3.8
|
8.2
|
1.0
|
O
|
B:ASN170
|
3.9
|
8.8
|
1.0
|
CB
|
B:ASN170
|
3.9
|
8.3
|
1.0
|
C
|
B:PRO167
|
3.9
|
7.7
|
1.0
|
CA
|
B:ASN170
|
3.9
|
7.9
|
1.0
|
N
|
B:ASN170
|
4.0
|
8.0
|
1.0
|
O
|
B:THR168
|
4.0
|
8.5
|
1.0
|
HB2
|
B:PRO167
|
4.1
|
10.6
|
1.0
|
C
|
B:THR168
|
4.1
|
8.2
|
1.0
|
CB
|
B:THR171
|
4.1
|
9.5
|
1.0
|
HG21
|
B:THR171
|
4.2
|
16.0
|
1.0
|
HD22
|
B:ASN170
|
4.2
|
10.9
|
1.0
|
N
|
B:THR168
|
4.3
|
7.9
|
1.0
|
C15
|
B:3GK301
|
4.4
|
8.3
|
1.0
|
C17
|
B:3GK301
|
4.4
|
9.1
|
1.0
|
HB3
|
B:ASN170
|
4.4
|
10.0
|
1.0
|
HG23
|
B:THR168
|
4.6
|
14.4
|
1.0
|
O
|
B:HOH757
|
4.7
|
12.1
|
0.3
|
O
|
B:HOH700
|
4.7
|
20.2
|
1.0
|
HB
|
B:THR171
|
4.8
|
11.4
|
1.0
|
HG2
|
B:PRO167
|
4.8
|
11.3
|
1.0
|
C16
|
B:3GK301
|
4.9
|
8.3
|
1.0
|
HB
|
B:THR168
|
4.9
|
11.0
|
1.0
|
ND2
|
B:ASN170
|
4.9
|
9.1
|
1.0
|
CB
|
B:THR168
|
4.9
|
9.1
|
1.0
|
CB
|
B:PRO167
|
4.9
|
8.9
|
1.0
|
HA
|
B:ASN170
|
4.9
|
9.5
|
1.0
|
N
|
B:LEU169
|
5.0
|
7.7
|
1.0
|
CG
|
B:ASN170
|
5.0
|
7.9
|
1.0
|
H
|
B:ASP240
|
5.0
|
10.7
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 4uaa
Go back to
Fluorine Binding Sites List in 4uaa
Fluorine binding site 9 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:14.1
occ:1.00
|
F26
|
B:3GK301
|
0.0
|
14.1
|
1.0
|
C24
|
B:3GK301
|
1.3
|
10.3
|
1.0
|
F27
|
B:3GK301
|
2.1
|
11.4
|
1.0
|
F25
|
B:3GK301
|
2.2
|
12.4
|
1.0
|
C19
|
B:3GK301
|
2.3
|
9.4
|
1.0
|
C18
|
B:3GK301
|
2.7
|
9.5
|
1.0
|
O
|
B:HOH554
|
3.0
|
19.1
|
1.0
|
O
|
B:HOH700
|
3.3
|
20.2
|
1.0
|
HG23
|
B:THR171
|
3.3
|
16.0
|
1.0
|
C20
|
B:3GK301
|
3.6
|
8.9
|
1.0
|
HA
|
B:THR171
|
4.0
|
10.8
|
1.0
|
O
|
B:HOH757
|
4.0
|
12.1
|
0.3
|
HG22
|
B:THR171
|
4.1
|
16.0
|
1.0
|
C17
|
B:3GK301
|
4.1
|
9.1
|
1.0
|
OD2
|
B:ASP240
|
4.1
|
16.6
|
1.0
|
CG2
|
B:THR171
|
4.1
|
10.6
|
1.0
|
HA
|
B:THR168
|
4.4
|
9.8
|
1.0
|
O
|
B:HOH759
|
4.4
|
21.1
|
1.0
|
CG
|
B:ASP240
|
4.6
|
11.5
|
1.0
|
HG21
|
B:THR171
|
4.8
|
16.0
|
1.0
|
C15
|
B:3GK301
|
4.8
|
8.3
|
1.0
|
HB2
|
B:PRO167
|
4.8
|
10.6
|
1.0
|
HB2
|
B:ASN170
|
4.8
|
10.0
|
1.0
|
CA
|
B:THR171
|
4.8
|
9.0
|
1.0
|
O
|
B:PRO167
|
4.8
|
8.0
|
1.0
|
OD1
|
B:ASP240
|
4.9
|
11.4
|
1.0
|
N
|
B:THR171
|
5.0
|
8.3
|
1.0
|
C16
|
B:3GK301
|
5.0
|
8.3
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 4uaa
Go back to
Fluorine Binding Sites List in 4uaa
Fluorine binding site 10 out
of 12 in the Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Ctx-M-14 Class A Beta-Lactamase in Complex with A Non-Covalent Inhibitor at Sub-Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F302
b:17.2
occ:0.87
|
F27
|
B:3GK302
|
0.0
|
17.2
|
0.9
|
C24
|
B:3GK302
|
1.3
|
13.5
|
0.9
|
F25
|
B:3GK302
|
2.1
|
14.8
|
0.9
|
F26
|
B:3GK302
|
2.1
|
16.2
|
0.9
|
C19
|
B:3GK302
|
2.3
|
12.1
|
0.9
|
C18
|
B:3GK302
|
3.0
|
12.3
|
0.9
|
OG
|
B:SER274
|
3.4
|
12.6
|
1.0
|
C20
|
B:3GK302
|
3.4
|
11.7
|
0.9
|
CZ
|
B:ARG276
|
3.4
|
12.7
|
1.0
|
NE
|
B:ARG276
|
3.6
|
10.5
|
1.0
|
NH2
|
B:ARG276
|
3.6
|
17.3
|
1.0
|
HD3
|
B:ARG276
|
3.7
|
10.1
|
1.0
|
HH21
|
B:ARG276
|
3.8
|
20.8
|
1.0
|
HE
|
B:ARG276
|
3.8
|
12.6
|
1.0
|
NH1
|
B:ARG276
|
3.9
|
13.4
|
1.0
|
HB3
|
B:SER274
|
3.9
|
13.7
|
1.0
|
HH22
|
B:ARG276
|
3.9
|
20.8
|
1.0
|
HB2
|
B:SER274
|
3.9
|
13.7
|
1.0
|
CB
|
B:SER274
|
4.0
|
11.4
|
1.0
|
HH12
|
B:ARG276
|
4.2
|
16.1
|
1.0
|
CD
|
B:ARG276
|
4.2
|
8.4
|
1.0
|
HH11
|
B:ARG276
|
4.2
|
16.1
|
1.0
|
C17
|
B:3GK302
|
4.3
|
12.6
|
0.9
|
O
|
B:HOH524
|
4.3
|
11.3
|
1.0
|
O
|
B:HOH623
|
4.3
|
22.6
|
1.0
|
HG3
|
B:ARG276
|
4.4
|
10.1
|
1.0
|
C15
|
B:3GK302
|
4.6
|
11.9
|
0.9
|
O
|
B:HOH584
|
4.7
|
9.2
|
1.0
|
O
|
B:HOH683
|
4.8
|
12.4
|
0.5
|
CG
|
B:ARG276
|
4.9
|
8.4
|
1.0
|
HB3
|
B:SER237
|
4.9
|
9.1
|
1.0
|
C16
|
B:3GK302
|
4.9
|
12.6
|
0.9
|
OG
|
B:SER237
|
5.0
|
8.1
|
1.0
|
|
Reference:
D.A.Nichols,
J.C.Hargis,
R.Sanishvili,
P.Jaishankar,
K.Defrees,
E.W.Smith,
K.K.Wang,
F.Prati,
A.R.Renslo,
H.L.Woodcock,
Y.Chen.
Ligand-Induced Proton Transfer and Low-Barrier Hydrogen Bond Revealed By X-Ray Crystallography. J.Am.Chem.Soc. V. 137 8086 2015.
ISSN: ESSN 1520-5126
PubMed: 26057252
DOI: 10.1021/JACS.5B00749
Page generated: Thu Aug 1 05:59:38 2024
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