Atomistry » Fluorine » PDB 4uwg-4whq » 4v3v
Atomistry »
  Fluorine »
    PDB 4uwg-4whq »
      4v3v »

Fluorine in PDB 4v3v: Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine

Enzymatic activity of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine

All present enzymatic activity of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine:
1.14.13.39;

Protein crystallography data

The structure of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine, PDB code: 4v3v was solved by H.Li, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 91.99 / 2.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.746, 110.698, 164.384, 90.00, 90.00, 90.00
R / Rfree (%) 20.658 / 26.269

Other elements in 4v3v:

The structure of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Zinc (Zn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine (pdb code 4v3v). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine, PDB code: 4v3v:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 4v3v

Go back to Fluorine Binding Sites List in 4v3v
Fluorine binding site 1 out of 2 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F800

b:80.2
occ:1.00
 F7' A:S8F800 0.0 80.2 1.0
C3' A:S8F800 1.3 78.5 1.0
C2' A:S8F800 2.4 76.2 1.0
C4' A:S8F800 2.4 77.5 1.0
C1' A:S8F800 3.6 73.9 1.0
C5' A:S8F800 3.7 74.0 1.0
CZ3 B:TRP306 3.7 50.6 1.0
O A:HOH2052 3.9 55.4 1.0
CE3 B:TRP306 4.1 48.7 1.0
C6' A:S8F800 4.2 71.2 1.0
CH2 B:TRP306 4.7 51.1 1.0
C21 A:S8F800 4.8 69.5 1.0
CE A:MET336 4.8 80.5 1.0

Fluorine binding site 2 out of 2 in 4v3v

Go back to Fluorine Binding Sites List in 4v3v
Fluorine binding site 2 out of 2 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-(2-(1H-Imidazol-1-Yl)-4-Pyrimidylmethyl)- 3-(3-Fluorophenyl)Propan-1-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F800

b:63.5
occ:1.00
 F7' B:S8F800 0.0 63.5 1.0
C3' B:S8F800 1.4 67.1 1.0
C2' B:S8F800 2.4 63.2 1.0
C4' B:S8F800 2.4 70.5 1.0
C1' B:S8F800 3.7 67.7 1.0
C5' B:S8F800 3.7 69.7 1.0
CE3 A:TRP306 4.0 53.2 1.0
CZ3 A:TRP306 4.0 53.3 1.0
C6' B:S8F800 4.2 67.0 1.0
C21 B:S8F800 4.9 68.1 1.0

Reference:

P.Mukherjee, H.Li, I.F.Sevrioukova, G.Chreifi, P.Martasek, L.J.Roman, T.L.Poulos, R.B.Silverman. Novel 2,4-Disubstituted Pyrimidines As Potent, Selective, and Cell-Permeable Inhibitors of Neuronal Nitric Oxide Synthase. J.Med.Chem. 2014.
ISSN: ESSN 1520-4804
PubMed: 25489882
DOI: 10.1021/JM501719E
Page generated: Thu Aug 1 06:17:32 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy