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Fluorine in PDB 4xpz: Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride

Enzymatic activity of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride

All present enzymatic activity of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride:
3.1.3.16;

Protein crystallography data

The structure of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride, PDB code: 4xpz was solved by A.Ghosh, C.D.Lima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.51 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.692, 79.989, 89.132, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 18.2

Other elements in 4xpz:

The structure of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride (pdb code 4xpz). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride, PDB code: 4xpz:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 4xpz

Go back to Fluorine Binding Sites List in 4xpz
Fluorine binding site 1 out of 3 in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:14.1
occ:1.00
 F1 A:AF3601 0.0 14.1 1.0
AL A:AF3601 1.8 6.6 0.6
OG1 A:THR243 2.7 12.7 1.0
OD1 A:ASP170 2.7 12.0 1.0
O A:HOH1027 2.7 15.0 1.0
N A:ASP172 2.8 10.4 1.0
N A:LEU171 2.9 9.8 1.0
F3 A:AF3601 3.1 15.2 1.0
F2 A:AF3601 3.1 13.1 1.0
CB A:LEU171 3.3 10.9 1.0
CB A:THR243 3.3 11.7 1.0
CA A:LEU171 3.3 9.9 1.0
OD2 A:ASP172 3.4 14.5 1.0
CG A:ASP170 3.5 10.6 1.0
C A:LEU171 3.5 9.7 1.0
CA A:THR243 3.7 10.8 1.0
CB A:ASP172 3.8 11.6 1.0
CG A:ASP172 3.9 13.2 1.0
CA A:ASP172 3.9 9.4 1.0
C A:ASP170 4.0 9.4 1.0
OD2 A:ASP170 4.0 11.4 1.0
CG A:LEU171 4.1 10.3 1.0
N A:MET244 4.2 13.0 1.0
CA A:ASP170 4.3 9.4 1.0
CB A:ASP170 4.5 10.8 1.0
C A:THR243 4.5 11.8 1.0
MG A:MG604 4.6 11.2 1.0
O A:TYR242 4.6 12.2 1.0
CG2 A:THR243 4.7 12.8 1.0
CD1 A:LEU171 4.7 12.6 1.0
O A:LEU171 4.7 11.4 1.0
O A:ASP172 4.7 11.2 1.0
N A:THR243 4.8 11.5 1.0
C A:ASP172 4.8 10.6 1.0
NZ A:LYS280 4.8 13.4 1.0
OD1 A:ASP172 4.8 14.3 1.0
N A:GLY245 4.9 15.5 1.0

Fluorine binding site 2 out of 3 in 4xpz

Go back to Fluorine Binding Sites List in 4xpz
Fluorine binding site 2 out of 3 in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:13.1
occ:1.00
 F2 A:AF3601 0.0 13.1 1.0
AL A:AF3601 1.8 6.6 0.6
MG A:MG604 1.9 11.2 1.0
O A:HOH1027 2.8 15.0 1.0
O A:HOH833 2.8 11.1 1.0
OD1 A:ASP170 2.8 12.0 1.0
OD2 A:ASP170 2.9 11.4 1.0
O A:HOH835 2.9 12.7 1.0
O A:ASP172 2.9 11.2 1.0
F1 A:AF3601 3.1 14.1 1.0
CG A:ASP170 3.2 10.6 1.0
CB A:ASP172 3.2 11.6 1.0
F3 A:AF3601 3.2 15.2 1.0
O A:HOH856 3.4 18.2 1.0
N A:ASP172 3.5 10.4 1.0
O A:HOH1098 3.5 17.0 1.0
CA A:ASP172 3.6 9.4 1.0
C A:ASP172 3.6 10.6 1.0
OD2 A:ASP323 3.7 19.4 1.0
OD1 A:ASP298 3.9 11.4 1.0
OD2 A:ASP172 4.2 14.5 1.0
CG A:ASP172 4.2 13.2 1.0
CG A:ASP323 4.5 19.0 1.0
C A:LEU171 4.5 9.7 1.0
OD1 A:ASP323 4.6 17.4 1.0
CB A:ASP170 4.7 10.8 1.0
N A:LEU171 4.8 9.8 1.0
NZ A:LYS280 4.9 13.4 1.0
N A:GLN173 4.9 11.3 1.0
CG A:ASP298 5.0 12.5 1.0

Fluorine binding site 3 out of 3 in 4xpz

Go back to Fluorine Binding Sites List in 4xpz
Fluorine binding site 3 out of 3 in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Aluminum Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:15.2
occ:1.00
 F3 A:AF3601 0.0 15.2 1.0
AL A:AF3601 1.8 6.6 0.6
OD1 A:ASP170 2.7 12.0 1.0
NZ A:LYS280 2.7 13.4 1.0
O A:HOH1027 2.8 15.0 1.0
N A:MET244 2.8 13.0 1.0
O A:HOH1098 2.8 17.0 1.0
F1 A:AF3601 3.1 14.1 1.0
CE A:LYS280 3.1 13.2 1.0
CG A:MET244 3.2 18.0 0.3
F2 A:AF3601 3.2 13.1 1.0
CA A:THR243 3.4 10.8 1.0
C A:THR243 3.5 11.8 1.0
CB A:MET244 3.6 14.5 0.7
CB A:MET244 3.6 15.0 0.3
CG A:MET244 3.7 17.2 0.7
CA A:MET244 3.8 13.3 0.7
CA A:MET244 3.8 13.9 0.3
CG A:ASP170 3.8 10.6 1.0
O A:HOH856 3.9 18.2 1.0
OG1 A:THR243 3.9 12.7 1.0
O A:TYR242 4.0 12.2 1.0
O A:HOH833 4.1 11.1 1.0
CB A:THR243 4.2 11.7 1.0
N A:THR243 4.5 11.5 1.0
SD A:MET244 4.5 16.9 0.3
OD2 A:ASP170 4.5 11.4 1.0
CD A:LYS280 4.6 13.4 1.0
MG A:MG604 4.7 11.2 1.0
C A:TYR242 4.7 12.1 1.0
O A:THR243 4.7 12.6 1.0
C A:MET244 4.8 15.7 1.0
N A:GLY245 4.8 15.5 1.0
CB A:ASP170 4.9 10.8 1.0
OD2 A:ASP297 4.9 12.1 1.0

Reference:

B.Schwer, A.Ghosh, A.M.Sanchez, C.D.Lima, S.Shuman. Genetic and Structural Analysis of the Essential Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1. Rna.
ISSN: ESSN 1469-9001
Page generated: Thu Aug 1 06:43:57 2024

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