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Fluorine in PDB 4xq0: Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride

Enzymatic activity of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride

All present enzymatic activity of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride:
3.1.3.16;

Protein crystallography data

The structure of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride, PDB code: 4xq0 was solved by A.Ghosh, C.D.Lima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.60 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.422, 80.255, 89.196, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 20.1

Other elements in 4xq0:

The structure of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride (pdb code 4xq0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride, PDB code: 4xq0:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 4xq0

Go back to Fluorine Binding Sites List in 4xq0
Fluorine binding site 1 out of 3 in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F170

b:16.7
occ:1.00
F1 A:BFD170 0.0 16.7 1.0
BE A:BFD170 1.4 30.4 1.0
OD1 A:BFD170 2.3 14.0 1.0
F3 A:BFD170 2.3 14.5 1.0
F2 A:BFD170 2.4 16.0 1.0
O A:HOH771 2.8 22.7 1.0
NZ A:LYS280 2.9 16.6 1.0
O A:HOH864 3.0 22.4 1.0
N A:MET244 3.0 16.6 1.0
CE A:LYS280 3.5 13.2 1.0
CA A:THR243 3.5 14.0 1.0
CG A:BFD170 3.5 12.1 1.0
O A:HOH762 3.7 16.2 1.0
C A:THR243 3.7 17.5 1.0
OG1 A:THR243 3.7 16.0 1.0
CB A:MET244 3.8 18.5 1.0
MG A:MG606 4.0 16.1 1.0
CA A:MET244 4.0 14.6 1.0
O A:HOH772 4.0 38.9 1.0
CG A:MET244 4.0 24.6 1.0
O A:TYR242 4.1 15.0 1.0
OD2 A:BFD170 4.1 15.2 1.0
CB A:THR243 4.2 13.2 1.0
N A:THR243 4.6 16.4 1.0
CB A:BFD170 4.7 11.9 1.0
C A:TYR242 4.8 13.5 1.0
N A:LEU171 4.8 14.2 1.0
O A:THR243 4.8 15.2 1.0
OD2 A:ASP297 4.9 15.6 1.0
N A:ASP172 4.9 14.6 1.0
N A:GLY245 4.9 17.2 1.0
CD A:LYS280 5.0 15.3 1.0
O A:HOH763 5.0 14.7 1.0
C A:MET244 5.0 17.6 1.0

Fluorine binding site 2 out of 3 in 4xq0

Go back to Fluorine Binding Sites List in 4xq0
Fluorine binding site 2 out of 3 in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F170

b:16.0
occ:1.00
F2 A:BFD170 0.0 16.0 1.0
BE A:BFD170 1.4 30.4 1.0
MG A:MG606 1.9 16.1 1.0
F3 A:BFD170 2.3 14.5 1.0
F1 A:BFD170 2.4 16.7 1.0
OD1 A:BFD170 2.4 14.0 1.0
OD2 A:BFD170 2.7 15.2 1.0
O A:HOH762 2.8 16.2 1.0
CG A:BFD170 2.9 12.1 1.0
O A:ASP172 3.0 13.7 1.0
O A:HOH763 3.0 14.7 1.0
O A:HOH864 3.1 22.4 1.0
CB A:ASP172 3.3 16.0 1.0
N A:ASP172 3.3 14.6 1.0
O A:HOH771 3.5 22.7 1.0
CA A:ASP172 3.6 11.6 1.0
C A:ASP172 3.7 11.8 1.0
O A:HOH772 3.7 38.9 1.0
OD1 A:ASP298 4.0 14.1 1.0
OD2 A:ASP323 4.1 36.8 1.0
OD2 A:ASP172 4.3 22.6 1.0
C A:LEU171 4.3 14.0 1.0
CG A:ASP172 4.3 24.0 1.0
N A:LEU171 4.4 14.2 1.0
CB A:BFD170 4.4 11.9 1.0
NZ A:LYS280 4.5 16.6 1.0
OG1 A:THR243 4.7 16.0 1.0
CA A:LEU171 4.9 12.6 1.0
CG A:ASP323 4.9 36.6 1.0
OD1 A:ASP297 4.9 17.9 1.0
OD1 A:ASP323 5.0 29.4 1.0

Fluorine binding site 3 out of 3 in 4xq0

Go back to Fluorine Binding Sites List in 4xq0
Fluorine binding site 3 out of 3 in the Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1- R271A Bound to Beryllium Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F170

b:14.5
occ:1.00
F3 A:BFD170 0.0 14.5 1.0
BE A:BFD170 1.4 30.4 1.0
OD1 A:BFD170 2.3 14.0 1.0
F1 A:BFD170 2.3 16.7 1.0
F2 A:BFD170 2.3 16.0 1.0
OG1 A:THR243 2.7 16.0 1.0
N A:ASP172 2.9 14.6 1.0
O A:HOH864 3.0 22.4 1.0
N A:LEU171 3.1 14.2 1.0
CG A:BFD170 3.3 12.1 1.0
CB A:THR243 3.3 13.2 1.0
CB A:LEU171 3.5 11.3 1.0
CA A:THR243 3.5 14.0 1.0
CA A:LEU171 3.6 12.6 1.0
OD2 A:ASP172 3.6 22.6 1.0
C A:LEU171 3.7 14.0 1.0
CB A:ASP172 3.8 16.0 1.0
OD2 A:BFD170 3.8 15.2 1.0
CA A:ASP172 3.9 11.6 1.0
N A:MET244 4.0 16.6 1.0
CG A:ASP172 4.0 24.0 1.0
MG A:MG606 4.0 16.1 1.0
C A:BFD170 4.2 11.1 1.0
C A:THR243 4.3 17.5 1.0
O A:TYR242 4.4 15.0 1.0
CG A:LEU171 4.4 13.4 1.0
CA A:BFD170 4.4 11.7 1.0
NZ A:LYS280 4.5 16.6 1.0
CB A:BFD170 4.5 11.9 1.0
O A:ASP172 4.5 13.7 1.0
N A:THR243 4.7 16.4 1.0
C A:ASP172 4.7 11.8 1.0
CG2 A:THR243 4.7 17.0 1.0
O A:HOH762 4.8 16.2 1.0
O A:LEU171 4.8 15.6 1.0
O A:HOH771 4.9 22.7 1.0
C A:TYR242 5.0 13.5 1.0
N A:GLY245 5.0 17.2 1.0
CD1 A:LEU171 5.0 14.9 1.0

Reference:

B.Schwer, A.Ghosh, A.M.Sanchez, C.D.Lima, S.Shuman. Genetic and Structural Analysis of the Essential Fission Yeast Rna Polymerase II Ctd Phosphatase FCP1. Rna.
ISSN: ESSN 1469-9001
Page generated: Sun Dec 13 12:15:08 2020

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