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Fluorine in PDB 4y3m: Endothiapepsin in Complex with Fragment 103

Enzymatic activity of Endothiapepsin in Complex with Fragment 103

All present enzymatic activity of Endothiapepsin in Complex with Fragment 103:
3.4.23.22;

Protein crystallography data

The structure of Endothiapepsin in Complex with Fragment 103, PDB code: 4y3m was solved by J.Schiebel, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.27 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.195, 72.528, 104.051, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 16.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Endothiapepsin in Complex with Fragment 103 (pdb code 4y3m). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Endothiapepsin in Complex with Fragment 103, PDB code: 4y3m:

Fluorine binding site 1 out of 1 in 4y3m

Go back to Fluorine Binding Sites List in 4y3m
Fluorine binding site 1 out of 1 in the Endothiapepsin in Complex with Fragment 103


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Endothiapepsin in Complex with Fragment 103 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F405

b:26.8
occ:0.84
F A:45Y405 0.0 26.8 0.8
C A:45Y405 1.4 22.7 0.8
C1 A:45Y405 2.3 21.4 0.8
C5 A:45Y405 2.3 20.0 0.8
HG21 A:ILE302 3.0 20.7 1.0
HG22 A:ILE302 3.3 20.7 1.0
CG2 A:ILE302 3.6 17.2 1.0
C2 A:45Y405 3.6 19.1 0.8
C4 A:45Y405 3.6 18.4 0.8
HZ A:PHE194 3.9 21.4 1.0
HE1 A:PHE194 3.9 26.1 1.0
HB A:ILE302 4.0 24.3 1.0
C3 A:45Y405 4.1 18.4 0.8
HD13 A:ILE302 4.1 38.3 1.0
CZ A:PHE194 4.2 17.9 1.0
CE1 A:PHE194 4.2 21.7 1.0
HG23 A:ILE302 4.3 20.7 1.0
CB A:ILE302 4.4 20.2 1.0
HG22 A:ILE300 4.4 25.8 1.0
O2 A:PGE404 4.6 42.4 1.0
HD13 A:ILE217 4.6 13.8 1.0
HD12 A:ILE302 4.7 38.3 1.0
CD1 A:ILE302 4.8 31.9 1.0
HG23 A:ILE300 4.9 25.8 1.0
O A:ILE300 4.9 22.9 1.0
C1 A:PGE404 4.9 42.2 1.0

Reference:

J.Schiebel, A.Heine, G.Klebe. Crystallographic Fragment Screening of An Entire Library To Be Published.
Page generated: Sun Dec 13 12:15:42 2020

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