Fluorine in PDB 4y5a: Endothiapepsin in Complex with Fragment 206

All present enzymatic activity of Endothiapepsin in Complex with Fragment 206:
3.4.23.22;

The structure of Endothiapepsin in Complex with Fragment 206, PDB code: 4y5a was solved by F.R.Ehrmann, F.U.Huschmann, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.84 / 1.45
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.388, 72.875, 52.827, 90.00, 109.60, 90.00
R / Rfree (%)	11.9 / 15.7

The binding sites of Fluorine atom in the Endothiapepsin in Complex with Fragment 206 (pdb code 4y5a). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Endothiapepsin in Complex with Fragment 206, PDB code: 4y5a:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Endothiapepsin in Complex with Fragment 206


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Endothiapepsin in Complex with Fragment 206 within 5.0Å range: probe atom residue distance (Å) B Occ A:F416 b:17.9 occ:0.87 F2 A:47M416 0.0 17.9 0.9 C5 A:47M416 1.3 17.3 0.9 F A:47M416 2.1 20.4 0.9 F1 A:47M416 2.1 16.7 0.9 C4 A:47M416 2.3 14.9 0.9 HD21 A:LEU125 2.4 18.1 1.0 O A:47M416 2.9 14.6 0.9 HZ A:PHE116 3.1 12.4 1.0 CD2 A:LEU125 3.2 15.1 1.0 HD22 A:LEU125 3.2 18.1 1.0 HD11 A:LEU125 3.4 13.6 1.0 CG A:TYR79 3.5 10.4 1.0 C3 A:47M416 3.5 13.8 0.9 CD2 A:TYR79 3.5 10.9 1.0 CD1 A:TYR79 3.6 10.0 1.0 CE2 A:TYR79 3.7 10.3 1.0 CE1 A:TYR79 3.8 9.4 1.0 HD23 A:LEU125 3.8 18.1 1.0 HB3 A:TYR79 3.9 14.6 1.0 HE1 A:PHE116 3.9 11.9 1.0 CZ A:TYR79 3.9 10.1 1.0 HD2 A:TYR79 3.9 13.0 1.0 CZ A:PHE116 3.9 10.3 1.0 HD1 A:TYR79 4.0 12.0 1.0 CD1 A:LEU125 4.1 11.3 1.0 C1 A:47M416 4.1 13.9 0.9 HD13 A:LEU125 4.1 13.6 1.0 CB A:TYR79 4.1 12.2 1.0 HB2 A:TYR79 4.2 14.6 1.0 CG A:LEU125 4.2 11.8 1.0 HE2 A:TYR79 4.2 12.4 1.0 CE1 A:PHE116 4.3 9.9 1.0 HE1 A:TYR79 4.3 11.3 1.0 C2 A:47M416 4.4 12.9 0.9 HG A:LEU125 4.5 14.1 1.0 OD2 A:ASP35 4.6 9.3 1.0 OG A:SER83 4.6 12.5 1.0 HG A:SER83 4.7 15.0 1.0 OH A:TYR79 4.7 10.0 1.0 HD12 A:LEU125 5.0 13.6 1.0

Fluorine binding site 2 out of 3 in the Endothiapepsin in Complex with Fragment 206


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Endothiapepsin in Complex with Fragment 206 within 5.0Å range: probe atom residue distance (Å) B Occ A:F416 b:20.4 occ:0.87 F A:47M416 0.0 20.4 0.9 C5 A:47M416 1.3 17.3 0.9 F2 A:47M416 2.1 17.9 0.9 F1 A:47M416 2.1 16.7 0.9 C4 A:47M416 2.3 14.9 0.9 O A:47M416 2.8 14.6 0.9 C2 A:DMS406 3.0 18.6 0.8 C3 A:47M416 3.5 13.8 0.9 O A:GLY221 3.6 8.2 1.0 HB3 A:TYR79 3.7 14.6 1.0 C1 A:DMS406 4.0 17.2 0.8 HD21 A:LEU125 4.1 18.1 1.0 C1 A:47M416 4.1 13.9 0.9 OD2 A:ASP81 4.1 20.7 1.0 CB A:TYR79 4.3 12.2 1.0 HB2 A:TYR79 4.3 14.6 1.0 S A:DMS406 4.4 16.9 0.8 CG A:TYR79 4.4 10.4 1.0 O A:HOH569 4.4 7.8 1.0 C2 A:47M416 4.4 12.9 0.9 CG A:ASP81 4.5 19.6 1.0 CD2 A:TYR79 4.6 10.9 1.0 HD2 A:TYR79 4.6 13.0 1.0 OD1 A:ASP81 4.6 18.2 1.0 C A:GLY221 4.7 6.9 1.0 HG A:SER83 4.7 15.0 1.0 HZ A:PHE116 4.7 12.4 1.0 HA3 A:GLY221 4.9 8.3 1.0 OG A:SER83 4.9 12.5 1.0 CD1 A:TYR79 4.9 10.0 1.0

Fluorine binding site 3 out of 3 in the Endothiapepsin in Complex with Fragment 206


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Endothiapepsin in Complex with Fragment 206 within 5.0Å range: probe atom residue distance (Å) B Occ A:F416 b:16.7 occ:0.87 F1 A:47M416 0.0 16.7 0.9 C5 A:47M416 1.3 17.3 0.9 F A:47M416 2.1 20.4 0.9 F2 A:47M416 2.1 17.9 0.9 C4 A:47M416 2.3 14.9 0.9 HD21 A:LEU125 2.7 18.1 1.0 C3 A:47M416 3.0 13.8 0.9 O A:HOH569 3.3 7.8 1.0 O A:GLY221 3.4 8.2 1.0 OD2 A:ASP33 3.5 8.0 1.0 O A:47M416 3.6 14.6 0.9 HD11 A:LEU125 3.6 13.6 1.0 CD2 A:LEU125 3.6 15.1 1.0 HA3 A:GLY221 3.7 8.3 1.0 HD23 A:LEU125 4.0 18.1 1.0 HA2 A:GLY221 4.1 8.3 1.0 HG A:LEU125 4.1 14.1 1.0 CG A:ASP33 4.2 6.8 1.0 HD22 A:LEU125 4.2 18.1 1.0 C A:GLY221 4.2 6.9 1.0 HB2 A:ASP35 4.2 7.2 1.0 CA A:GLY221 4.2 6.9 1.0 CG A:LEU125 4.3 11.8 1.0 C2 A:47M416 4.3 12.9 0.9 OD2 A:ASP35 4.3 9.3 1.0 CD1 A:LEU125 4.3 11.3 1.0 C1 A:47M416 4.5 13.9 0.9 CG A:ASP35 4.5 7.3 1.0 HB3 A:ASP33 4.6 7.7 1.0 OD1 A:ASP33 4.6 8.0 1.0 C1 A:DMS406 4.7 17.2 0.8 C2 A:DMS406 4.7 18.6 0.8 HE1 A:PHE116 4.8 11.9 1.0 HD13 A:LEU125 4.8 13.6 1.0 CB A:ASP35 4.9 6.0 1.0 HZ A:PHE116 4.9 12.4 1.0 CB A:ASP33 5.0 6.4 1.0

F.R.Ehrmann, A.Heine, G.Klebe. Crystallographic Fragment Sreening of An Entire Library To Be Published.