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Fluorine in PDB 4yjt: The Kinase Domain of Human Spleen Tyrosine (Syk) in Complex with GTC000233

Enzymatic activity of The Kinase Domain of Human Spleen Tyrosine (Syk) in Complex with GTC000233

All present enzymatic activity of The Kinase Domain of Human Spleen Tyrosine (Syk) in Complex with GTC000233:
2.7.10.2;

Protein crystallography data

The structure of The Kinase Domain of Human Spleen Tyrosine (Syk) in Complex with GTC000233, PDB code: 4yjt was solved by D.O.Somers, M.Neu, J.Stuckey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.53 / 1.52
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.328, 87.214, 40.230, 90.00, 92.39, 90.00
R / Rfree (%) 17.4 / 20.8

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Kinase Domain of Human Spleen Tyrosine (Syk) in Complex with GTC000233 (pdb code 4yjt). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the The Kinase Domain of Human Spleen Tyrosine (Syk) in Complex with GTC000233, PDB code: 4yjt:

Fluorine binding site 1 out of 1 in 4yjt

Go back to Fluorine Binding Sites List in 4yjt
Fluorine binding site 1 out of 1 in the The Kinase Domain of Human Spleen Tyrosine (Syk) in Complex with GTC000233


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Kinase Domain of Human Spleen Tyrosine (Syk) in Complex with GTC000233 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:15.7
occ:1.00
F2 A:4DQ702 0.0 15.7 1.0
C20 A:4DQ702 1.3 14.8 1.0
C19 A:4DQ702 2.4 13.2 1.0
C10 A:4DQ702 2.4 13.9 1.0
H18 A:4DQ702 2.6 13.2 0.0
C3 A:4DQ702 2.7 15.4 1.0
N1 A:4DQ702 2.9 18.4 1.0
CB A:MET448 3.1 15.8 1.0
C4 A:4DQ702 3.2 17.9 1.0
C9 A:4DQ702 3.2 17.3 1.0
CG A:MET448 3.3 19.1 1.0
H7 A:4DQ702 3.5 17.8 0.0
N7 A:4DQ702 3.6 17.0 1.0
CG1 A:VAL433 3.6 17.9 1.0
N4 A:4DQ702 3.6 14.2 1.0
C8 A:4DQ702 3.8 24.2 1.0
C5 A:4DQ702 3.9 17.4 1.0
C7 A:4DQ702 3.9 18.6 1.0
H10 A:4DQ702 3.9 24.1 0.0
O A:HOH1056 4.0 28.9 1.0
CD1 A:LEU501 4.0 16.4 1.0
C11 A:4DQ702 4.0 16.0 1.0
CE A:MET448 4.3 15.9 1.0
C6 A:4DQ702 4.3 17.9 1.0
O A:GLU449 4.3 14.0 0.5
C2 A:4DQ702 4.4 19.9 1.0
O A:GLU449 4.4 14.5 0.5
CB A:ALA400 4.5 16.0 1.0
CB A:VAL433 4.6 16.8 1.0
CA A:MET448 4.6 13.4 1.0
H8 A:4DQ702 4.6 17.4 0.0
N3 A:4DQ702 4.7 26.9 1.0
SD A:MET448 4.7 25.7 1.0
CG2 A:VAL433 4.7 16.9 1.0
N2 A:4DQ702 4.7 25.1 1.0
H5 A:4DQ702 4.9 19.9 0.0
H6 A:4DQ702 4.9 19.9 0.0
H3 A:4DQ702 4.9 22.4 0.0
H4 A:4DQ702 5.0 22.4 0.0
C A:MET448 5.0 14.9 1.0

Reference:

J.Liddle, F.L.Atkinson, M.D.Barker, P.S.Carter, N.R.Curtis, R.P.Davis, C.Douault, M.C.Dickson, D.Elwes, N.S.Garton, M.Gray, T.G.Hayhow, C.I.Hobbs, E.Jones, S.Leach, K.Leavens, H.D.Lewis, S.Mccleary, M.Neu, V.K.Patel, A.G.Preston, C.Ramirez-Molina, T.J.Shipley, P.A.Skone, N.Smithers, D.O.Somers, A.L.Walker, R.J.Watson, G.G.Weingarten. Discovery of GSK143, A Highly Potent, Selective and Orally Efficacious Spleen Tyrosine Kinase Inhibitor. Bioorg. Med. Chem. Lett. V. 21 6188 2011.
ISSN: ESSN 1464-3405
PubMed: 21903390
DOI: 10.1016/J.BMCL.2011.07.082
Page generated: Thu Aug 1 06:59:57 2024

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