Fluorine in PDB 5aor: Structure of Mle Rna Adp ALF4 Complex
Enzymatic activity of Structure of Mle Rna Adp ALF4 Complex
All present enzymatic activity of Structure of Mle Rna Adp ALF4 Complex:
3.6.4.13;
Protein crystallography data
The structure of Structure of Mle Rna Adp ALF4 Complex, PDB code: 5aor
was solved by
J.R.Prabu,
E.Conti,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.82 /
2.08
|
|
Space group
|
P 43 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
154.373,
154.373,
198.194,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
19.044 /
22.071
|
Other elements in 5aor:
The structure of Structure of Mle Rna Adp ALF4 Complex also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of Mle Rna Adp ALF4 Complex
(pdb code 5aor). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Structure of Mle Rna Adp ALF4 Complex, PDB code: 5aor:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 5aor
Go back to
Fluorine Binding Sites List in 5aor
Fluorine binding site 1 out
of 8 in the Structure of Mle Rna Adp ALF4 Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2161
b:29.3
occ:1.00
|
F1
|
A:ALF2161
|
0.0
|
29.3
|
1.0
|
|
AL
|
A:ALF2161
|
1.8
|
28.2
|
1.0
|
|
F2
|
A:ALF2161
|
2.5
|
28.7
|
1.0
|
|
O
|
A:HOH3121
|
2.5
|
23.2
|
1.0
|
|
F3
|
A:ALF2161
|
2.6
|
26.6
|
1.0
|
|
O2B
|
A:ADP2159
|
2.6
|
27.0
|
1.0
|
|
O
|
A:HOH3120
|
2.7
|
21.2
|
1.0
|
|
NZ
|
A:LYS413
|
2.7
|
31.6
|
1.0
|
|
CE
|
A:LYS413
|
3.3
|
29.7
|
1.0
|
|
O
|
A:HOH3082
|
3.5
|
26.6
|
1.0
|
|
PB
|
A:ADP2159
|
3.5
|
28.6
|
1.0
|
|
F4
|
A:ALF2161
|
3.6
|
24.9
|
1.0
|
|
O1B
|
A:ADP2159
|
3.8
|
27.4
|
1.0
|
|
CA
|
A:THR409
|
3.9
|
27.4
|
1.0
|
|
O3B
|
A:ADP2159
|
3.9
|
26.1
|
1.0
|
|
OE2
|
A:GLU508
|
4.0
|
32.0
|
1.0
|
|
CB
|
A:ALA540
|
4.0
|
28.1
|
1.0
|
|
MG
|
A:MG2160
|
4.0
|
27.5
|
1.0
|
|
CG2
|
A:THR409
|
4.3
|
26.6
|
1.0
|
|
N
|
A:GLY410
|
4.3
|
28.1
|
1.0
|
|
OE1
|
A:GLN764
|
4.3
|
27.1
|
1.0
|
|
N
|
A:ALA540
|
4.4
|
28.1
|
1.0
|
|
O
|
A:ASN408
|
4.4
|
28.3
|
1.0
|
|
NH2
|
A:ARG771
|
4.4
|
53.8
|
0.5
|
|
OE1
|
A:GLU508
|
4.4
|
29.0
|
1.0
|
|
CB
|
A:THR409
|
4.5
|
26.8
|
1.0
|
|
N
|
A:THR409
|
4.5
|
28.5
|
1.0
|
|
NE2
|
A:GLN764
|
4.6
|
27.7
|
1.0
|
|
CD
|
A:GLU508
|
4.6
|
29.4
|
1.0
|
|
C
|
A:THR409
|
4.7
|
27.6
|
1.0
|
|
C
|
A:ASN408
|
4.8
|
28.5
|
1.0
|
|
O
|
A:GLY407
|
4.8
|
28.3
|
1.0
|
|
CD
|
A:LYS413
|
4.8
|
28.9
|
1.0
|
|
CA
|
A:ALA540
|
4.8
|
28.8
|
1.0
|
|
CD
|
A:GLN764
|
4.9
|
28.0
|
1.0
|
|
O3A
|
A:ADP2159
|
5.0
|
31.4
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 5aor
Go back to
Fluorine Binding Sites List in 5aor
Fluorine binding site 2 out
of 8 in the Structure of Mle Rna Adp ALF4 Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2161
b:28.7
occ:1.00
|
F2
|
A:ALF2161
|
0.0
|
28.7
|
1.0
|
|
AL
|
A:ALF2161
|
1.8
|
28.2
|
1.0
|
|
NH2
|
A:ARG771
|
2.4
|
53.8
|
0.5
|
|
F1
|
A:ALF2161
|
2.5
|
29.3
|
1.0
|
|
F4
|
A:ALF2161
|
2.5
|
24.9
|
1.0
|
|
O2B
|
A:ADP2159
|
2.7
|
27.0
|
1.0
|
|
O
|
A:HOH3120
|
2.8
|
21.2
|
1.0
|
|
CB
|
A:THR409
|
3.0
|
26.8
|
1.0
|
|
CA
|
A:THR409
|
3.0
|
27.4
|
1.0
|
|
NH1
|
A:ARG771
|
3.1
|
19.6
|
0.5
|
|
CG2
|
A:THR409
|
3.2
|
26.6
|
1.0
|
|
N
|
A:GLY410
|
3.3
|
28.1
|
1.0
|
|
NH1
|
A:ARG768
|
3.3
|
30.3
|
1.0
|
|
F3
|
A:ALF2161
|
3.6
|
26.6
|
1.0
|
|
C
|
A:THR409
|
3.6
|
27.6
|
1.0
|
|
CZ
|
A:ARG771
|
3.7
|
51.8
|
0.5
|
|
NH2
|
A:ARG768
|
3.8
|
35.1
|
1.0
|
|
NH2
|
A:ARG771
|
4.0
|
18.8
|
0.5
|
|
OE1
|
A:GLN764
|
4.0
|
27.1
|
1.0
|
|
CZ
|
A:ARG768
|
4.0
|
33.7
|
1.0
|
|
CZ
|
A:ARG771
|
4.0
|
19.8
|
0.5
|
|
PB
|
A:ADP2159
|
4.1
|
28.6
|
1.0
|
|
N
|
A:THR409
|
4.3
|
28.5
|
1.0
|
|
NE
|
A:ARG771
|
4.3
|
51.7
|
0.5
|
|
OG1
|
A:THR409
|
4.4
|
27.3
|
1.0
|
|
CA
|
A:GLY410
|
4.4
|
28.8
|
1.0
|
|
O
|
A:HOH3121
|
4.5
|
23.2
|
1.0
|
|
O
|
A:GLY767
|
4.6
|
27.4
|
1.0
|
|
NH1
|
A:ARG771
|
4.6
|
49.9
|
0.5
|
|
NZ
|
A:LYS413
|
4.6
|
31.6
|
1.0
|
|
O
|
A:THR409
|
4.7
|
28.0
|
1.0
|
|
N
|
A:SER723
|
4.8
|
29.6
|
1.0
|
|
O1B
|
A:ADP2159
|
4.8
|
27.4
|
1.0
|
|
O
|
A:ASN408
|
4.9
|
28.3
|
1.0
|
|
O3A
|
A:ADP2159
|
4.9
|
31.4
|
1.0
|
|
CD
|
A:GLN764
|
5.0
|
28.0
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 5aor
Go back to
Fluorine Binding Sites List in 5aor
Fluorine binding site 3 out
of 8 in the Structure of Mle Rna Adp ALF4 Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2161
b:26.6
occ:1.00
|
F3
|
A:ALF2161
|
0.0
|
26.6
|
1.0
|
|
AL
|
A:ALF2161
|
1.8
|
28.2
|
1.0
|
|
MG
|
A:MG2160
|
1.9
|
27.5
|
1.0
|
|
O
|
A:HOH3082
|
2.5
|
26.6
|
1.0
|
|
F4
|
A:ALF2161
|
2.5
|
24.9
|
1.0
|
|
O
|
A:HOH3120
|
2.6
|
21.2
|
1.0
|
|
F1
|
A:ALF2161
|
2.6
|
29.3
|
1.0
|
|
O2B
|
A:ADP2159
|
2.7
|
27.0
|
1.0
|
|
OE2
|
A:GLU508
|
2.7
|
32.0
|
1.0
|
|
O
|
A:HOH3083
|
2.8
|
28.3
|
1.0
|
|
O3B
|
A:ADP2159
|
2.9
|
26.1
|
1.0
|
|
O
|
A:HOH3084
|
3.0
|
24.2
|
1.0
|
|
PB
|
A:ADP2159
|
3.3
|
28.6
|
1.0
|
|
F2
|
A:ALF2161
|
3.6
|
28.7
|
1.0
|
|
CA
|
A:SER723
|
3.6
|
31.7
|
1.0
|
|
CD
|
A:GLU508
|
3.8
|
29.4
|
1.0
|
|
N
|
A:SER723
|
3.8
|
29.6
|
1.0
|
|
OG1
|
A:THR414
|
3.8
|
26.9
|
1.0
|
|
O
|
A:HOH3121
|
4.0
|
23.2
|
1.0
|
|
OE1
|
A:GLU508
|
4.3
|
29.0
|
1.0
|
|
O1B
|
A:ADP2159
|
4.3
|
27.4
|
1.0
|
|
O3A
|
A:ADP2159
|
4.4
|
31.4
|
1.0
|
|
NZ
|
A:LYS413
|
4.5
|
31.6
|
1.0
|
|
O
|
A:SER723
|
4.5
|
31.1
|
1.0
|
|
C
|
A:SER723
|
4.5
|
28.6
|
1.0
|
|
NH2
|
A:ARG771
|
4.5
|
53.8
|
0.5
|
|
CB
|
A:SER723
|
4.5
|
30.9
|
1.0
|
|
CE
|
A:LYS413
|
4.6
|
29.7
|
1.0
|
|
OG
|
A:SER723
|
4.6
|
31.8
|
1.0
|
|
O2A
|
A:ADP2159
|
4.7
|
30.7
|
1.0
|
|
NH2
|
A:ARG771
|
4.8
|
18.8
|
0.5
|
|
CG
|
A:GLU508
|
4.9
|
27.9
|
1.0
|
|
OD1
|
A:ASP507
|
4.9
|
31.0
|
1.0
|
|
CB
|
A:THR414
|
4.9
|
28.9
|
1.0
|
|
NH2
|
A:ARG768
|
5.0
|
35.1
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 5aor
Go back to
Fluorine Binding Sites List in 5aor
Fluorine binding site 4 out
of 8 in the Structure of Mle Rna Adp ALF4 Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2161
b:24.9
occ:1.00
|
F4
|
A:ALF2161
|
0.0
|
24.9
|
1.0
|
|
AL
|
A:ALF2161
|
1.8
|
28.2
|
1.0
|
|
NH2
|
A:ARG771
|
2.5
|
53.8
|
0.5
|
|
F3
|
A:ALF2161
|
2.5
|
26.6
|
1.0
|
|
F2
|
A:ALF2161
|
2.5
|
28.7
|
1.0
|
|
NH2
|
A:ARG768
|
2.6
|
35.1
|
1.0
|
|
O2B
|
A:ADP2159
|
2.7
|
27.0
|
1.0
|
|
O
|
A:HOH3120
|
2.8
|
21.2
|
1.0
|
|
NH2
|
A:ARG771
|
2.9
|
18.8
|
0.5
|
|
N
|
A:SER723
|
3.0
|
29.6
|
1.0
|
|
CA
|
A:SER723
|
3.1
|
31.7
|
1.0
|
|
C
|
A:SER723
|
3.3
|
28.6
|
1.0
|
|
NH1
|
A:ARG771
|
3.3
|
19.6
|
0.5
|
|
CZ
|
A:ARG771
|
3.4
|
51.8
|
0.5
|
|
O
|
A:SER723
|
3.4
|
31.1
|
1.0
|
|
CZ
|
A:ARG771
|
3.5
|
19.8
|
0.5
|
|
CZ
|
A:ARG768
|
3.5
|
33.7
|
1.0
|
|
O
|
A:HOH3084
|
3.5
|
24.2
|
1.0
|
|
F1
|
A:ALF2161
|
3.6
|
29.3
|
1.0
|
|
NH1
|
A:ARG768
|
3.6
|
30.3
|
1.0
|
|
NH1
|
A:ARG771
|
3.8
|
49.9
|
0.5
|
|
MG
|
A:MG2160
|
3.9
|
27.5
|
1.0
|
|
PB
|
A:ADP2159
|
3.9
|
28.6
|
1.0
|
|
N
|
A:ILE724
|
4.1
|
28.5
|
1.0
|
|
C
|
A:THR722
|
4.1
|
31.2
|
1.0
|
|
O3B
|
A:ADP2159
|
4.2
|
26.1
|
1.0
|
|
OE2
|
A:GLU508
|
4.2
|
32.0
|
1.0
|
|
NE
|
A:ARG771
|
4.3
|
51.7
|
0.5
|
|
O3A
|
A:ADP2159
|
4.4
|
31.4
|
1.0
|
|
O2A
|
A:ADP2159
|
4.5
|
30.7
|
1.0
|
|
CB
|
A:SER723
|
4.6
|
30.9
|
1.0
|
|
O
|
A:HOH3083
|
4.6
|
28.3
|
1.0
|
|
NE
|
A:ARG771
|
4.7
|
20.3
|
0.5
|
|
O
|
A:ILE724
|
4.7
|
29.5
|
1.0
|
|
NE
|
A:ARG768
|
4.8
|
38.0
|
1.0
|
|
N
|
A:GLY410
|
4.8
|
28.1
|
1.0
|
|
O
|
A:HOH3181
|
4.8
|
25.5
|
1.0
|
|
CA
|
A:THR722
|
4.8
|
29.9
|
1.0
|
|
OE1
|
A:GLN764
|
5.0
|
27.1
|
1.0
|
|
O
|
A:THR722
|
5.0
|
28.0
|
1.0
|
|
O
|
A:HOH3082
|
5.0
|
26.6
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 5aor
Go back to
Fluorine Binding Sites List in 5aor
Fluorine binding site 5 out
of 8 in the Structure of Mle Rna Adp ALF4 Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F2161
b:26.0
occ:1.00
|
F1
|
B:ALF2161
|
0.0
|
26.0
|
1.0
|
|
AL
|
B:ALF2161
|
1.8
|
24.3
|
1.0
|
|
F2
|
B:ALF2161
|
2.5
|
22.4
|
1.0
|
|
F3
|
B:ALF2161
|
2.6
|
27.7
|
1.0
|
|
O
|
B:HOH3093
|
2.6
|
19.1
|
1.0
|
|
NZ
|
B:LYS413
|
2.7
|
25.4
|
1.0
|
|
O2B
|
B:ADP2159
|
2.7
|
21.6
|
1.0
|
|
O
|
B:HOH3094
|
2.8
|
21.8
|
1.0
|
|
CE
|
B:LYS413
|
3.3
|
24.9
|
1.0
|
|
PB
|
B:ADP2159
|
3.6
|
22.7
|
1.0
|
|
O
|
B:HOH3070
|
3.6
|
21.5
|
1.0
|
|
F4
|
B:ALF2161
|
3.6
|
26.5
|
1.0
|
|
O1B
|
B:ADP2159
|
3.8
|
23.4
|
1.0
|
|
CA
|
B:THR409
|
3.8
|
22.7
|
1.0
|
|
O3B
|
B:ADP2159
|
4.0
|
18.9
|
1.0
|
|
MG
|
B:MG2160
|
4.0
|
25.6
|
1.0
|
|
OE2
|
B:GLU508
|
4.1
|
26.5
|
1.0
|
|
CB
|
B:ALA540
|
4.1
|
26.4
|
1.0
|
|
CG2
|
B:THR409
|
4.2
|
22.9
|
1.0
|
|
OE1
|
B:GLN764
|
4.3
|
25.3
|
1.0
|
|
N
|
B:GLY410
|
4.3
|
23.2
|
1.0
|
|
NH2
|
B:ARG771
|
4.4
|
41.7
|
0.5
|
|
O
|
B:ASN408
|
4.4
|
25.0
|
1.0
|
|
N
|
B:ALA540
|
4.5
|
23.5
|
1.0
|
|
CB
|
B:THR409
|
4.5
|
22.5
|
1.0
|
|
OE1
|
B:GLU508
|
4.5
|
28.3
|
1.0
|
|
N
|
B:THR409
|
4.5
|
24.8
|
1.0
|
|
NE2
|
B:GLN764
|
4.6
|
23.7
|
1.0
|
|
C
|
B:THR409
|
4.7
|
22.5
|
1.0
|
|
CD
|
B:GLU508
|
4.7
|
25.7
|
1.0
|
|
C
|
B:ASN408
|
4.8
|
25.2
|
1.0
|
|
CD
|
B:LYS413
|
4.8
|
27.0
|
1.0
|
|
O
|
B:GLY407
|
4.8
|
29.3
|
1.0
|
|
NH2
|
B:ARG768
|
4.8
|
23.5
|
1.0
|
|
CA
|
B:ALA540
|
4.9
|
25.3
|
1.0
|
|
CD
|
B:GLN764
|
4.9
|
24.6
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 5aor
Go back to
Fluorine Binding Sites List in 5aor
Fluorine binding site 6 out
of 8 in the Structure of Mle Rna Adp ALF4 Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F2161
b:22.4
occ:1.00
|
F2
|
B:ALF2161
|
0.0
|
22.4
|
1.0
|
|
AL
|
B:ALF2161
|
1.8
|
24.3
|
1.0
|
|
NH2
|
B:ARG771
|
2.3
|
41.7
|
0.5
|
|
F1
|
B:ALF2161
|
2.5
|
26.0
|
1.0
|
|
F4
|
B:ALF2161
|
2.5
|
26.5
|
1.0
|
|
O2B
|
B:ADP2159
|
2.6
|
21.6
|
1.0
|
|
O
|
B:HOH3094
|
2.8
|
21.8
|
1.0
|
|
NH2
|
B:ARG768
|
2.9
|
23.5
|
1.0
|
|
CA
|
B:THR409
|
3.0
|
22.7
|
1.0
|
|
CB
|
B:THR409
|
3.0
|
22.5
|
1.0
|
|
NH1
|
B:ARG771
|
3.2
|
15.7
|
0.5
|
|
N
|
B:GLY410
|
3.2
|
23.2
|
1.0
|
|
CG2
|
B:THR409
|
3.3
|
22.9
|
1.0
|
|
F3
|
B:ALF2161
|
3.5
|
27.7
|
1.0
|
|
C
|
B:THR409
|
3.6
|
22.5
|
1.0
|
|
CZ
|
B:ARG771
|
3.6
|
36.8
|
0.5
|
|
CZ
|
B:ARG768
|
3.8
|
23.4
|
1.0
|
|
NH2
|
B:ARG771
|
3.9
|
15.8
|
0.5
|
|
NH1
|
B:ARG768
|
3.9
|
22.2
|
1.0
|
|
CZ
|
B:ARG771
|
4.0
|
16.4
|
0.5
|
|
OE1
|
B:GLN764
|
4.0
|
25.3
|
1.0
|
|
PB
|
B:ADP2159
|
4.1
|
22.7
|
1.0
|
|
NE
|
B:ARG771
|
4.3
|
37.5
|
0.5
|
|
N
|
B:THR409
|
4.3
|
24.8
|
1.0
|
|
CA
|
B:GLY410
|
4.3
|
24.7
|
1.0
|
|
OG1
|
B:THR409
|
4.4
|
21.8
|
1.0
|
|
O
|
B:GLY767
|
4.5
|
23.8
|
1.0
|
|
NH1
|
B:ARG771
|
4.5
|
39.4
|
0.5
|
|
NZ
|
B:LYS413
|
4.6
|
25.4
|
1.0
|
|
O
|
B:HOH3093
|
4.6
|
19.1
|
1.0
|
|
O1B
|
B:ADP2159
|
4.7
|
23.4
|
1.0
|
|
O
|
B:THR409
|
4.7
|
20.6
|
1.0
|
|
N
|
B:SER723
|
4.8
|
25.3
|
1.0
|
|
O
|
B:ASN408
|
4.9
|
25.0
|
1.0
|
|
O3A
|
B:ADP2159
|
4.9
|
20.8
|
1.0
|
|
O3B
|
B:ADP2159
|
4.9
|
18.9
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 5aor
Go back to
Fluorine Binding Sites List in 5aor
Fluorine binding site 7 out
of 8 in the Structure of Mle Rna Adp ALF4 Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F2161
b:27.7
occ:1.00
|
F3
|
B:ALF2161
|
0.0
|
27.7
|
1.0
|
|
AL
|
B:ALF2161
|
1.8
|
24.3
|
1.0
|
|
MG
|
B:MG2160
|
1.8
|
25.6
|
1.0
|
|
F4
|
B:ALF2161
|
2.5
|
26.5
|
1.0
|
|
O
|
B:HOH3070
|
2.5
|
21.5
|
1.0
|
|
F1
|
B:ALF2161
|
2.6
|
26.0
|
1.0
|
|
O
|
B:HOH3071
|
2.7
|
23.0
|
1.0
|
|
O2B
|
B:ADP2159
|
2.8
|
21.6
|
1.0
|
|
O3B
|
B:ADP2159
|
2.8
|
18.9
|
1.0
|
|
O
|
B:HOH3094
|
2.8
|
21.8
|
1.0
|
|
OE2
|
B:GLU508
|
2.9
|
26.5
|
1.0
|
|
O
|
B:HOH3069
|
3.0
|
22.5
|
1.0
|
|
PB
|
B:ADP2159
|
3.2
|
22.7
|
1.0
|
|
F2
|
B:ALF2161
|
3.5
|
22.4
|
1.0
|
|
CA
|
B:SER723
|
3.7
|
26.2
|
1.0
|
|
OG1
|
B:THR414
|
3.8
|
25.0
|
1.0
|
|
CD
|
B:GLU508
|
3.9
|
25.7
|
1.0
|
|
N
|
B:SER723
|
3.9
|
25.3
|
1.0
|
|
O
|
B:HOH3093
|
4.0
|
19.1
|
1.0
|
|
O1B
|
B:ADP2159
|
4.3
|
23.4
|
1.0
|
|
NZ
|
B:LYS413
|
4.4
|
25.4
|
1.0
|
|
OE1
|
B:GLU508
|
4.4
|
28.3
|
1.0
|
|
O3A
|
B:ADP2159
|
4.4
|
20.8
|
1.0
|
|
NH2
|
B:ARG771
|
4.5
|
41.7
|
0.5
|
|
CE
|
B:LYS413
|
4.5
|
24.9
|
1.0
|
|
O
|
B:SER723
|
4.5
|
27.5
|
1.0
|
|
C
|
B:SER723
|
4.6
|
28.5
|
1.0
|
|
NH2
|
B:ARG771
|
4.6
|
15.8
|
0.5
|
|
CB
|
B:SER723
|
4.6
|
27.0
|
1.0
|
|
OG
|
B:SER723
|
4.7
|
26.4
|
1.0
|
|
O2A
|
B:ADP2159
|
4.8
|
23.3
|
1.0
|
|
OD1
|
B:ASP507
|
4.8
|
25.9
|
1.0
|
|
CB
|
B:THR414
|
4.8
|
24.6
|
1.0
|
|
CG
|
B:GLU508
|
5.0
|
26.0
|
1.0
|
|
OD2
|
B:ASP507
|
5.0
|
29.2
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 5aor
Go back to
Fluorine Binding Sites List in 5aor
Fluorine binding site 8 out
of 8 in the Structure of Mle Rna Adp ALF4 Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F2161
b:26.5
occ:1.00
|
F4
|
B:ALF2161
|
0.0
|
26.5
|
1.0
|
|
AL
|
B:ALF2161
|
1.8
|
24.3
|
1.0
|
|
NH2
|
B:ARG771
|
2.5
|
41.7
|
0.5
|
|
F3
|
B:ALF2161
|
2.5
|
27.7
|
1.0
|
|
F2
|
B:ALF2161
|
2.5
|
22.4
|
1.0
|
|
O2B
|
B:ADP2159
|
2.7
|
21.6
|
1.0
|
|
NH2
|
B:ARG771
|
2.7
|
15.8
|
0.5
|
|
O
|
B:HOH3094
|
2.9
|
21.8
|
1.0
|
|
NH1
|
B:ARG768
|
3.0
|
22.2
|
1.0
|
|
N
|
B:SER723
|
3.1
|
25.3
|
1.0
|
|
CA
|
B:SER723
|
3.1
|
26.2
|
1.0
|
|
C
|
B:SER723
|
3.3
|
28.5
|
1.0
|
|
CZ
|
B:ARG771
|
3.4
|
36.8
|
0.5
|
|
O
|
B:SER723
|
3.4
|
27.5
|
1.0
|
|
CZ
|
B:ARG771
|
3.4
|
16.4
|
0.5
|
|
NH1
|
B:ARG771
|
3.5
|
15.7
|
0.5
|
|
O
|
B:HOH3069
|
3.5
|
22.5
|
1.0
|
|
NH2
|
B:ARG768
|
3.5
|
23.5
|
1.0
|
|
F1
|
B:ALF2161
|
3.6
|
26.0
|
1.0
|
|
CZ
|
B:ARG768
|
3.7
|
23.4
|
1.0
|
|
NH1
|
B:ARG771
|
3.8
|
39.4
|
0.5
|
|
MG
|
B:MG2160
|
3.8
|
25.6
|
1.0
|
|
PB
|
B:ADP2159
|
3.8
|
22.7
|
1.0
|
|
O3B
|
B:ADP2159
|
4.1
|
18.9
|
1.0
|
|
N
|
B:ILE724
|
4.1
|
26.4
|
1.0
|
|
C
|
B:THR722
|
4.2
|
27.4
|
1.0
|
|
OE2
|
B:GLU508
|
4.3
|
26.5
|
1.0
|
|
NE
|
B:ARG771
|
4.3
|
37.5
|
0.5
|
|
O3A
|
B:ADP2159
|
4.3
|
20.8
|
1.0
|
|
O2A
|
B:ADP2159
|
4.4
|
23.3
|
1.0
|
|
O
|
B:HOH3071
|
4.4
|
23.0
|
1.0
|
|
NE
|
B:ARG771
|
4.5
|
17.6
|
0.5
|
|
CB
|
B:SER723
|
4.6
|
27.0
|
1.0
|
|
O
|
B:ILE724
|
4.7
|
26.2
|
1.0
|
|
N
|
B:GLY410
|
4.8
|
23.2
|
1.0
|
|
O
|
B:HOH3162
|
4.8
|
22.4
|
1.0
|
|
CA
|
B:THR722
|
4.9
|
24.9
|
1.0
|
|
Reference:
J.R.Prabu,
M.Muller,
A.W.Thomae,
S.Schussler,
F.Bonneau,
P.B.Becker,
E.Conti.
Structure of the Rna Helicase Mle Reveals the Molecular Mechanisms For Uridine Specificity and Rna-Atp Coupling. Mol.Cell V. 60 487 2015.
ISSN: ISSN 1097-2765
PubMed: 26545078
DOI: 10.1016/J.MOLCEL.2015.10.011
Page generated: Thu Aug 1 07:48:48 2024
|
