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Fluorine in PDB 5aor: Structure of Mle Rna Adp ALF4 Complex

Enzymatic activity of Structure of Mle Rna Adp ALF4 Complex

All present enzymatic activity of Structure of Mle Rna Adp ALF4 Complex:
3.6.4.13;

Protein crystallography data

The structure of Structure of Mle Rna Adp ALF4 Complex, PDB code: 5aor was solved by J.R.Prabu, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.82 / 2.08
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 154.373, 154.373, 198.194, 90.00, 90.00, 90.00
R / Rfree (%) 19.044 / 22.071

Other elements in 5aor:

The structure of Structure of Mle Rna Adp ALF4 Complex also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Aluminium (Al) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Mle Rna Adp ALF4 Complex (pdb code 5aor). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Structure of Mle Rna Adp ALF4 Complex, PDB code: 5aor:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 5aor

Go back to Fluorine Binding Sites List in 5aor
Fluorine binding site 1 out of 8 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2161

b:29.3
occ:1.00
F1 A:ALF2161 0.0 29.3 1.0
AL A:ALF2161 1.8 28.2 1.0
F2 A:ALF2161 2.5 28.7 1.0
O A:HOH3121 2.5 23.2 1.0
F3 A:ALF2161 2.6 26.6 1.0
O2B A:ADP2159 2.6 27.0 1.0
O A:HOH3120 2.7 21.2 1.0
NZ A:LYS413 2.7 31.6 1.0
CE A:LYS413 3.3 29.7 1.0
O A:HOH3082 3.5 26.6 1.0
PB A:ADP2159 3.5 28.6 1.0
F4 A:ALF2161 3.6 24.9 1.0
O1B A:ADP2159 3.8 27.4 1.0
CA A:THR409 3.9 27.4 1.0
O3B A:ADP2159 3.9 26.1 1.0
OE2 A:GLU508 4.0 32.0 1.0
CB A:ALA540 4.0 28.1 1.0
MG A:MG2160 4.0 27.5 1.0
CG2 A:THR409 4.3 26.6 1.0
N A:GLY410 4.3 28.1 1.0
OE1 A:GLN764 4.3 27.1 1.0
N A:ALA540 4.4 28.1 1.0
O A:ASN408 4.4 28.3 1.0
NH2 A:ARG771 4.4 53.8 0.5
OE1 A:GLU508 4.4 29.0 1.0
CB A:THR409 4.5 26.8 1.0
N A:THR409 4.5 28.5 1.0
NE2 A:GLN764 4.6 27.7 1.0
CD A:GLU508 4.6 29.4 1.0
C A:THR409 4.7 27.6 1.0
C A:ASN408 4.8 28.5 1.0
O A:GLY407 4.8 28.3 1.0
CD A:LYS413 4.8 28.9 1.0
CA A:ALA540 4.8 28.8 1.0
CD A:GLN764 4.9 28.0 1.0
O3A A:ADP2159 5.0 31.4 1.0

Fluorine binding site 2 out of 8 in 5aor

Go back to Fluorine Binding Sites List in 5aor
Fluorine binding site 2 out of 8 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2161

b:28.7
occ:1.00
F2 A:ALF2161 0.0 28.7 1.0
AL A:ALF2161 1.8 28.2 1.0
NH2 A:ARG771 2.4 53.8 0.5
F1 A:ALF2161 2.5 29.3 1.0
F4 A:ALF2161 2.5 24.9 1.0
O2B A:ADP2159 2.7 27.0 1.0
O A:HOH3120 2.8 21.2 1.0
CB A:THR409 3.0 26.8 1.0
CA A:THR409 3.0 27.4 1.0
NH1 A:ARG771 3.1 19.6 0.5
CG2 A:THR409 3.2 26.6 1.0
N A:GLY410 3.3 28.1 1.0
NH1 A:ARG768 3.3 30.3 1.0
F3 A:ALF2161 3.6 26.6 1.0
C A:THR409 3.6 27.6 1.0
CZ A:ARG771 3.7 51.8 0.5
NH2 A:ARG768 3.8 35.1 1.0
NH2 A:ARG771 4.0 18.8 0.5
OE1 A:GLN764 4.0 27.1 1.0
CZ A:ARG768 4.0 33.7 1.0
CZ A:ARG771 4.0 19.8 0.5
PB A:ADP2159 4.1 28.6 1.0
N A:THR409 4.3 28.5 1.0
NE A:ARG771 4.3 51.7 0.5
OG1 A:THR409 4.4 27.3 1.0
CA A:GLY410 4.4 28.8 1.0
O A:HOH3121 4.5 23.2 1.0
O A:GLY767 4.6 27.4 1.0
NH1 A:ARG771 4.6 49.9 0.5
NZ A:LYS413 4.6 31.6 1.0
O A:THR409 4.7 28.0 1.0
N A:SER723 4.8 29.6 1.0
O1B A:ADP2159 4.8 27.4 1.0
O A:ASN408 4.9 28.3 1.0
O3A A:ADP2159 4.9 31.4 1.0
CD A:GLN764 5.0 28.0 1.0

Fluorine binding site 3 out of 8 in 5aor

Go back to Fluorine Binding Sites List in 5aor
Fluorine binding site 3 out of 8 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2161

b:26.6
occ:1.00
F3 A:ALF2161 0.0 26.6 1.0
AL A:ALF2161 1.8 28.2 1.0
MG A:MG2160 1.9 27.5 1.0
O A:HOH3082 2.5 26.6 1.0
F4 A:ALF2161 2.5 24.9 1.0
O A:HOH3120 2.6 21.2 1.0
F1 A:ALF2161 2.6 29.3 1.0
O2B A:ADP2159 2.7 27.0 1.0
OE2 A:GLU508 2.7 32.0 1.0
O A:HOH3083 2.8 28.3 1.0
O3B A:ADP2159 2.9 26.1 1.0
O A:HOH3084 3.0 24.2 1.0
PB A:ADP2159 3.3 28.6 1.0
F2 A:ALF2161 3.6 28.7 1.0
CA A:SER723 3.6 31.7 1.0
CD A:GLU508 3.8 29.4 1.0
N A:SER723 3.8 29.6 1.0
OG1 A:THR414 3.8 26.9 1.0
O A:HOH3121 4.0 23.2 1.0
OE1 A:GLU508 4.3 29.0 1.0
O1B A:ADP2159 4.3 27.4 1.0
O3A A:ADP2159 4.4 31.4 1.0
NZ A:LYS413 4.5 31.6 1.0
O A:SER723 4.5 31.1 1.0
C A:SER723 4.5 28.6 1.0
NH2 A:ARG771 4.5 53.8 0.5
CB A:SER723 4.5 30.9 1.0
CE A:LYS413 4.6 29.7 1.0
OG A:SER723 4.6 31.8 1.0
O2A A:ADP2159 4.7 30.7 1.0
NH2 A:ARG771 4.8 18.8 0.5
CG A:GLU508 4.9 27.9 1.0
OD1 A:ASP507 4.9 31.0 1.0
CB A:THR414 4.9 28.9 1.0
NH2 A:ARG768 5.0 35.1 1.0

Fluorine binding site 4 out of 8 in 5aor

Go back to Fluorine Binding Sites List in 5aor
Fluorine binding site 4 out of 8 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2161

b:24.9
occ:1.00
F4 A:ALF2161 0.0 24.9 1.0
AL A:ALF2161 1.8 28.2 1.0
NH2 A:ARG771 2.5 53.8 0.5
F3 A:ALF2161 2.5 26.6 1.0
F2 A:ALF2161 2.5 28.7 1.0
NH2 A:ARG768 2.6 35.1 1.0
O2B A:ADP2159 2.7 27.0 1.0
O A:HOH3120 2.8 21.2 1.0
NH2 A:ARG771 2.9 18.8 0.5
N A:SER723 3.0 29.6 1.0
CA A:SER723 3.1 31.7 1.0
C A:SER723 3.3 28.6 1.0
NH1 A:ARG771 3.3 19.6 0.5
CZ A:ARG771 3.4 51.8 0.5
O A:SER723 3.4 31.1 1.0
CZ A:ARG771 3.5 19.8 0.5
CZ A:ARG768 3.5 33.7 1.0
O A:HOH3084 3.5 24.2 1.0
F1 A:ALF2161 3.6 29.3 1.0
NH1 A:ARG768 3.6 30.3 1.0
NH1 A:ARG771 3.8 49.9 0.5
MG A:MG2160 3.9 27.5 1.0
PB A:ADP2159 3.9 28.6 1.0
N A:ILE724 4.1 28.5 1.0
C A:THR722 4.1 31.2 1.0
O3B A:ADP2159 4.2 26.1 1.0
OE2 A:GLU508 4.2 32.0 1.0
NE A:ARG771 4.3 51.7 0.5
O3A A:ADP2159 4.4 31.4 1.0
O2A A:ADP2159 4.5 30.7 1.0
CB A:SER723 4.6 30.9 1.0
O A:HOH3083 4.6 28.3 1.0
NE A:ARG771 4.7 20.3 0.5
O A:ILE724 4.7 29.5 1.0
NE A:ARG768 4.8 38.0 1.0
N A:GLY410 4.8 28.1 1.0
O A:HOH3181 4.8 25.5 1.0
CA A:THR722 4.8 29.9 1.0
OE1 A:GLN764 5.0 27.1 1.0
O A:THR722 5.0 28.0 1.0
O A:HOH3082 5.0 26.6 1.0

Fluorine binding site 5 out of 8 in 5aor

Go back to Fluorine Binding Sites List in 5aor
Fluorine binding site 5 out of 8 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2161

b:26.0
occ:1.00
F1 B:ALF2161 0.0 26.0 1.0
AL B:ALF2161 1.8 24.3 1.0
F2 B:ALF2161 2.5 22.4 1.0
F3 B:ALF2161 2.6 27.7 1.0
O B:HOH3093 2.6 19.1 1.0
NZ B:LYS413 2.7 25.4 1.0
O2B B:ADP2159 2.7 21.6 1.0
O B:HOH3094 2.8 21.8 1.0
CE B:LYS413 3.3 24.9 1.0
PB B:ADP2159 3.6 22.7 1.0
O B:HOH3070 3.6 21.5 1.0
F4 B:ALF2161 3.6 26.5 1.0
O1B B:ADP2159 3.8 23.4 1.0
CA B:THR409 3.8 22.7 1.0
O3B B:ADP2159 4.0 18.9 1.0
MG B:MG2160 4.0 25.6 1.0
OE2 B:GLU508 4.1 26.5 1.0
CB B:ALA540 4.1 26.4 1.0
CG2 B:THR409 4.2 22.9 1.0
OE1 B:GLN764 4.3 25.3 1.0
N B:GLY410 4.3 23.2 1.0
NH2 B:ARG771 4.4 41.7 0.5
O B:ASN408 4.4 25.0 1.0
N B:ALA540 4.5 23.5 1.0
CB B:THR409 4.5 22.5 1.0
OE1 B:GLU508 4.5 28.3 1.0
N B:THR409 4.5 24.8 1.0
NE2 B:GLN764 4.6 23.7 1.0
C B:THR409 4.7 22.5 1.0
CD B:GLU508 4.7 25.7 1.0
C B:ASN408 4.8 25.2 1.0
CD B:LYS413 4.8 27.0 1.0
O B:GLY407 4.8 29.3 1.0
NH2 B:ARG768 4.8 23.5 1.0
CA B:ALA540 4.9 25.3 1.0
CD B:GLN764 4.9 24.6 1.0

Fluorine binding site 6 out of 8 in 5aor

Go back to Fluorine Binding Sites List in 5aor
Fluorine binding site 6 out of 8 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2161

b:22.4
occ:1.00
F2 B:ALF2161 0.0 22.4 1.0
AL B:ALF2161 1.8 24.3 1.0
NH2 B:ARG771 2.3 41.7 0.5
F1 B:ALF2161 2.5 26.0 1.0
F4 B:ALF2161 2.5 26.5 1.0
O2B B:ADP2159 2.6 21.6 1.0
O B:HOH3094 2.8 21.8 1.0
NH2 B:ARG768 2.9 23.5 1.0
CA B:THR409 3.0 22.7 1.0
CB B:THR409 3.0 22.5 1.0
NH1 B:ARG771 3.2 15.7 0.5
N B:GLY410 3.2 23.2 1.0
CG2 B:THR409 3.3 22.9 1.0
F3 B:ALF2161 3.5 27.7 1.0
C B:THR409 3.6 22.5 1.0
CZ B:ARG771 3.6 36.8 0.5
CZ B:ARG768 3.8 23.4 1.0
NH2 B:ARG771 3.9 15.8 0.5
NH1 B:ARG768 3.9 22.2 1.0
CZ B:ARG771 4.0 16.4 0.5
OE1 B:GLN764 4.0 25.3 1.0
PB B:ADP2159 4.1 22.7 1.0
NE B:ARG771 4.3 37.5 0.5
N B:THR409 4.3 24.8 1.0
CA B:GLY410 4.3 24.7 1.0
OG1 B:THR409 4.4 21.8 1.0
O B:GLY767 4.5 23.8 1.0
NH1 B:ARG771 4.5 39.4 0.5
NZ B:LYS413 4.6 25.4 1.0
O B:HOH3093 4.6 19.1 1.0
O1B B:ADP2159 4.7 23.4 1.0
O B:THR409 4.7 20.6 1.0
N B:SER723 4.8 25.3 1.0
O B:ASN408 4.9 25.0 1.0
O3A B:ADP2159 4.9 20.8 1.0
O3B B:ADP2159 4.9 18.9 1.0

Fluorine binding site 7 out of 8 in 5aor

Go back to Fluorine Binding Sites List in 5aor
Fluorine binding site 7 out of 8 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2161

b:27.7
occ:1.00
F3 B:ALF2161 0.0 27.7 1.0
AL B:ALF2161 1.8 24.3 1.0
MG B:MG2160 1.8 25.6 1.0
F4 B:ALF2161 2.5 26.5 1.0
O B:HOH3070 2.5 21.5 1.0
F1 B:ALF2161 2.6 26.0 1.0
O B:HOH3071 2.7 23.0 1.0
O2B B:ADP2159 2.8 21.6 1.0
O3B B:ADP2159 2.8 18.9 1.0
O B:HOH3094 2.8 21.8 1.0
OE2 B:GLU508 2.9 26.5 1.0
O B:HOH3069 3.0 22.5 1.0
PB B:ADP2159 3.2 22.7 1.0
F2 B:ALF2161 3.5 22.4 1.0
CA B:SER723 3.7 26.2 1.0
OG1 B:THR414 3.8 25.0 1.0
CD B:GLU508 3.9 25.7 1.0
N B:SER723 3.9 25.3 1.0
O B:HOH3093 4.0 19.1 1.0
O1B B:ADP2159 4.3 23.4 1.0
NZ B:LYS413 4.4 25.4 1.0
OE1 B:GLU508 4.4 28.3 1.0
O3A B:ADP2159 4.4 20.8 1.0
NH2 B:ARG771 4.5 41.7 0.5
CE B:LYS413 4.5 24.9 1.0
O B:SER723 4.5 27.5 1.0
C B:SER723 4.6 28.5 1.0
NH2 B:ARG771 4.6 15.8 0.5
CB B:SER723 4.6 27.0 1.0
OG B:SER723 4.7 26.4 1.0
O2A B:ADP2159 4.8 23.3 1.0
OD1 B:ASP507 4.8 25.9 1.0
CB B:THR414 4.8 24.6 1.0
CG B:GLU508 5.0 26.0 1.0
OD2 B:ASP507 5.0 29.2 1.0

Fluorine binding site 8 out of 8 in 5aor

Go back to Fluorine Binding Sites List in 5aor
Fluorine binding site 8 out of 8 in the Structure of Mle Rna Adp ALF4 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of Mle Rna Adp ALF4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2161

b:26.5
occ:1.00
F4 B:ALF2161 0.0 26.5 1.0
AL B:ALF2161 1.8 24.3 1.0
NH2 B:ARG771 2.5 41.7 0.5
F3 B:ALF2161 2.5 27.7 1.0
F2 B:ALF2161 2.5 22.4 1.0
O2B B:ADP2159 2.7 21.6 1.0
NH2 B:ARG771 2.7 15.8 0.5
O B:HOH3094 2.9 21.8 1.0
NH1 B:ARG768 3.0 22.2 1.0
N B:SER723 3.1 25.3 1.0
CA B:SER723 3.1 26.2 1.0
C B:SER723 3.3 28.5 1.0
CZ B:ARG771 3.4 36.8 0.5
O B:SER723 3.4 27.5 1.0
CZ B:ARG771 3.4 16.4 0.5
NH1 B:ARG771 3.5 15.7 0.5
O B:HOH3069 3.5 22.5 1.0
NH2 B:ARG768 3.5 23.5 1.0
F1 B:ALF2161 3.6 26.0 1.0
CZ B:ARG768 3.7 23.4 1.0
NH1 B:ARG771 3.8 39.4 0.5
MG B:MG2160 3.8 25.6 1.0
PB B:ADP2159 3.8 22.7 1.0
O3B B:ADP2159 4.1 18.9 1.0
N B:ILE724 4.1 26.4 1.0
C B:THR722 4.2 27.4 1.0
OE2 B:GLU508 4.3 26.5 1.0
NE B:ARG771 4.3 37.5 0.5
O3A B:ADP2159 4.3 20.8 1.0
O2A B:ADP2159 4.4 23.3 1.0
O B:HOH3071 4.4 23.0 1.0
NE B:ARG771 4.5 17.6 0.5
CB B:SER723 4.6 27.0 1.0
O B:ILE724 4.7 26.2 1.0
N B:GLY410 4.8 23.2 1.0
O B:HOH3162 4.8 22.4 1.0
CA B:THR722 4.9 24.9 1.0

Reference:

J.R.Prabu, M.Muller, A.W.Thomae, S.Schussler, F.Bonneau, P.B.Becker, E.Conti. Structure of the Rna Helicase Mle Reveals the Molecular Mechanisms For Uridine Specificity and Rna-Atp Coupling. Mol.Cell V. 60 487 2015.
ISSN: ISSN 1097-2765
PubMed: 26545078
DOI: 10.1016/J.MOLCEL.2015.10.011
Page generated: Sun Dec 13 12:18:29 2020

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