Fluorine in PDB 5b2x: Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Enzymatic activity of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
All present enzymatic activity of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan:
1.14.14.1;
1.6.2.4;
Protein crystallography data
The structure of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan, PDB code: 5b2x
was solved by
Z.Cong,
O.Shoji,
C.Kasai,
H.Sugimoto,
Y.Shiro,
Y.Watanabe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.17 /
1.90
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.402,
147.355,
64.301,
90.00,
100.10,
90.00
|
R / Rfree (%)
|
18 /
21.6
|
Other elements in 5b2x:
The structure of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
26;
Binding sites:
The binding sites of Fluorine atom in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
(pdb code 5b2x). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 26 binding sites of Fluorine where determined in the
Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan, PDB code: 5b2x:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 1 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:38.7
occ:0.60
|
FAX
|
A:W0T502
|
0.0
|
38.7
|
0.6
|
CAW
|
A:W0T502
|
1.3
|
37.7
|
0.6
|
FBD
|
A:W0T502
|
1.7
|
57.6
|
0.4
|
FAZ
|
A:W0T502
|
2.1
|
41.7
|
0.6
|
FAY
|
A:W0T502
|
2.2
|
34.6
|
0.6
|
FBG
|
A:W0T502
|
2.3
|
57.5
|
0.4
|
FBC
|
A:W0T502
|
2.4
|
56.6
|
0.4
|
FBE
|
A:W0T502
|
2.4
|
38.8
|
0.6
|
CAV
|
A:W0T502
|
2.4
|
38.1
|
0.6
|
CAU
|
A:W0T502
|
2.4
|
56.4
|
0.4
|
FBC
|
A:W0T502
|
2.7
|
38.4
|
0.6
|
CAU
|
A:W0T502
|
2.8
|
37.5
|
0.6
|
FBB
|
A:W0T502
|
2.8
|
40.4
|
0.6
|
CAT
|
A:W0T502
|
3.1
|
37.3
|
0.6
|
CE
|
A:MET185
|
3.1
|
48.0
|
1.0
|
CAS
|
A:W0T502
|
3.2
|
56.8
|
0.4
|
CAT
|
A:W0T502
|
3.3
|
56.5
|
0.4
|
FBA
|
A:W0T502
|
3.5
|
33.5
|
0.6
|
FBE
|
A:W0T502
|
3.7
|
56.8
|
0.4
|
CAV
|
A:W0T502
|
3.7
|
55.6
|
0.4
|
FBH
|
A:W0T502
|
3.8
|
58.6
|
0.4
|
FBA
|
A:W0T502
|
3.8
|
56.9
|
0.4
|
FBF
|
A:W0T502
|
3.9
|
39.0
|
0.6
|
CB
|
A:ALA74
|
3.9
|
27.0
|
1.0
|
SD
|
A:MET185
|
4.0
|
46.7
|
1.0
|
FBG
|
A:W0T502
|
4.1
|
31.7
|
0.6
|
FBD
|
A:W0T502
|
4.1
|
37.7
|
0.6
|
CAS
|
A:W0T502
|
4.2
|
35.5
|
0.6
|
O
|
A:LEU437
|
4.2
|
20.4
|
1.0
|
CD1
|
A:LEU437
|
4.4
|
23.8
|
1.0
|
O
|
A:HOH888
|
4.4
|
27.9
|
1.0
|
FAX
|
A:W0T502
|
4.4
|
56.0
|
0.4
|
FBF
|
A:W0T502
|
4.5
|
57.4
|
0.4
|
CAR
|
A:W0T502
|
4.5
|
56.0
|
0.4
|
FBB
|
A:W0T502
|
4.5
|
56.2
|
0.4
|
CE1
|
A:PHE328
|
4.6
|
21.2
|
1.0
|
CAW
|
A:W0T502
|
4.8
|
54.5
|
0.4
|
FBI
|
A:W0T502
|
4.8
|
54.1
|
0.4
|
CA
|
A:LEU437
|
4.8
|
21.6
|
1.0
|
FBJ
|
A:W0T502
|
4.8
|
55.8
|
0.4
|
O
|
A:THR436
|
4.8
|
20.1
|
1.0
|
O
|
A:HOH754
|
4.9
|
20.6
|
1.0
|
C
|
A:LEU437
|
4.9
|
20.8
|
1.0
|
FBI
|
A:W0T502
|
4.9
|
36.0
|
0.6
|
CZ
|
A:PHE328
|
5.0
|
21.6
|
1.0
|
|
Fluorine binding site 2 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 2 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:56.0
occ:0.40
|
FAX
|
A:W0T502
|
0.0
|
56.0
|
0.4
|
CAW
|
A:W0T502
|
1.3
|
54.5
|
0.4
|
FBC
|
A:W0T502
|
2.1
|
56.6
|
0.4
|
FAY
|
A:W0T502
|
2.2
|
53.4
|
0.4
|
FAZ
|
A:W0T502
|
2.2
|
53.1
|
0.4
|
CAV
|
A:W0T502
|
2.3
|
55.6
|
0.4
|
CAU
|
A:W0T502
|
2.6
|
56.4
|
0.4
|
CG
|
A:LEU75
|
2.9
|
24.5
|
1.0
|
OG
|
A:SER72
|
2.9
|
23.7
|
1.0
|
FBA
|
A:W0T502
|
3.0
|
56.9
|
0.4
|
FBE
|
A:W0T502
|
3.0
|
56.8
|
0.4
|
FBB
|
A:W0T502
|
3.1
|
40.4
|
0.6
|
CD2
|
A:LEU75
|
3.1
|
24.8
|
1.0
|
CAT
|
A:W0T502
|
3.2
|
56.5
|
0.4
|
FAZ
|
A:W0T502
|
3.2
|
41.7
|
0.6
|
FBB
|
A:W0T502
|
3.4
|
56.2
|
0.4
|
FBF
|
A:W0T502
|
3.5
|
57.4
|
0.4
|
CD1
|
A:LEU75
|
3.5
|
24.1
|
1.0
|
CZ
|
A:PHE328
|
3.5
|
21.6
|
1.0
|
CB
|
A:SER72
|
3.8
|
23.0
|
1.0
|
FBD
|
A:W0T502
|
3.8
|
57.6
|
0.4
|
CAV
|
A:W0T502
|
4.1
|
38.1
|
0.6
|
CAW
|
A:W0T502
|
4.1
|
37.7
|
0.6
|
CB
|
A:LEU75
|
4.1
|
23.3
|
1.0
|
CE2
|
A:PHE328
|
4.3
|
21.1
|
1.0
|
O
|
A:HOH645
|
4.4
|
12.2
|
1.0
|
O
|
A:ALA330
|
4.4
|
17.4
|
1.0
|
FAX
|
A:W0T502
|
4.4
|
38.7
|
0.6
|
CE1
|
A:PHE328
|
4.4
|
21.2
|
1.0
|
N
|
A:LEU75
|
4.5
|
24.2
|
1.0
|
FBA
|
A:W0T502
|
4.6
|
33.5
|
0.6
|
CAS
|
A:W0T502
|
4.7
|
56.8
|
0.4
|
N
|
A:SER72
|
4.7
|
20.5
|
1.0
|
CA
|
A:LEU75
|
4.8
|
23.3
|
1.0
|
CA
|
A:SER72
|
4.9
|
22.4
|
1.0
|
CB
|
A:ALA74
|
4.9
|
27.0
|
1.0
|
FBG
|
A:W0T502
|
5.0
|
57.5
|
0.4
|
|
Fluorine binding site 3 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 3 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:34.6
occ:0.60
|
FAY
|
A:W0T502
|
0.0
|
34.6
|
0.6
|
CAW
|
A:W0T502
|
1.3
|
37.7
|
0.6
|
FAZ
|
A:W0T502
|
2.2
|
41.7
|
0.6
|
FAX
|
A:W0T502
|
2.2
|
38.7
|
0.6
|
CAV
|
A:W0T502
|
2.3
|
38.1
|
0.6
|
O
|
A:LEU437
|
2.5
|
20.4
|
1.0
|
FBC
|
A:W0T502
|
2.5
|
38.4
|
0.6
|
FBD
|
A:W0T502
|
2.6
|
57.6
|
0.4
|
FBA
|
A:W0T502
|
2.6
|
33.5
|
0.6
|
CAU
|
A:W0T502
|
2.9
|
37.5
|
0.6
|
O
|
A:HOH888
|
3.0
|
27.9
|
1.0
|
C
|
A:LEU437
|
3.4
|
20.8
|
1.0
|
FBB
|
A:W0T502
|
3.5
|
40.4
|
0.6
|
CE1
|
A:PHE328
|
3.5
|
21.2
|
1.0
|
FBA
|
A:W0T502
|
3.5
|
56.9
|
0.4
|
CAU
|
A:W0T502
|
3.6
|
56.4
|
0.4
|
FBC
|
A:W0T502
|
3.7
|
56.6
|
0.4
|
FBD
|
A:W0T502
|
3.8
|
37.7
|
0.6
|
CD1
|
A:PHE328
|
3.9
|
20.8
|
1.0
|
CA
|
A:LEU437
|
4.0
|
21.6
|
1.0
|
FBE
|
A:W0T502
|
4.0
|
38.8
|
0.6
|
CD
|
A:PRO329
|
4.0
|
16.9
|
1.0
|
CAT
|
A:W0T502
|
4.1
|
37.3
|
0.6
|
CAV
|
A:W0T502
|
4.2
|
55.6
|
0.4
|
FBG
|
A:W0T502
|
4.2
|
57.5
|
0.4
|
CZ
|
A:PHE328
|
4.3
|
21.6
|
1.0
|
CD1
|
A:LEU437
|
4.3
|
23.8
|
1.0
|
O
|
A:THR436
|
4.4
|
20.1
|
1.0
|
CE
|
A:MET185
|
4.4
|
48.0
|
1.0
|
N
|
A:THR438
|
4.5
|
19.3
|
1.0
|
CG
|
A:LEU437
|
4.5
|
23.0
|
1.0
|
O
|
A:HOH754
|
4.6
|
20.6
|
1.0
|
CG
|
A:PRO329
|
4.6
|
16.8
|
1.0
|
FBG
|
A:W0T502
|
4.7
|
31.7
|
0.6
|
CB
|
A:LEU437
|
4.8
|
22.5
|
1.0
|
CG
|
A:PHE328
|
4.9
|
20.1
|
1.0
|
CAT
|
A:W0T502
|
4.9
|
56.5
|
0.4
|
CA
|
A:THR438
|
4.9
|
18.1
|
1.0
|
FBF
|
A:W0T502
|
4.9
|
39.0
|
0.6
|
CAS
|
A:W0T502
|
4.9
|
56.8
|
0.4
|
FBB
|
A:W0T502
|
4.9
|
56.2
|
0.4
|
N
|
A:PRO329
|
5.0
|
16.8
|
1.0
|
|
Fluorine binding site 4 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 4 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:53.4
occ:0.40
|
FAY
|
A:W0T502
|
0.0
|
53.4
|
0.4
|
CAW
|
A:W0T502
|
1.3
|
54.5
|
0.4
|
FAZ
|
A:W0T502
|
2.1
|
53.1
|
0.4
|
FAX
|
A:W0T502
|
2.2
|
56.0
|
0.4
|
CAV
|
A:W0T502
|
2.4
|
55.6
|
0.4
|
FBA
|
A:W0T502
|
2.5
|
56.9
|
0.4
|
O
|
A:ALA330
|
2.7
|
17.4
|
1.0
|
CZ
|
A:PHE328
|
3.0
|
21.6
|
1.0
|
CE2
|
A:PHE328
|
3.0
|
21.1
|
1.0
|
FBB
|
A:W0T502
|
3.0
|
56.2
|
0.4
|
O
|
A:HOH645
|
3.3
|
12.2
|
1.0
|
CA
|
A:PHE331
|
3.4
|
14.4
|
1.0
|
FBB
|
A:W0T502
|
3.5
|
40.4
|
0.6
|
CAU
|
A:W0T502
|
3.6
|
56.4
|
0.4
|
C
|
A:ALA330
|
3.6
|
15.8
|
1.0
|
FBC
|
A:W0T502
|
3.7
|
56.6
|
0.4
|
O1A
|
A:HEM501
|
3.8
|
11.5
|
1.0
|
CB
|
A:PHE331
|
4.0
|
14.1
|
1.0
|
N
|
A:PHE331
|
4.0
|
14.5
|
1.0
|
FAZ
|
A:W0T502
|
4.1
|
41.7
|
0.6
|
FBF
|
A:W0T502
|
4.2
|
57.4
|
0.4
|
N
|
A:SER332
|
4.2
|
14.1
|
1.0
|
CD1
|
A:LEU75
|
4.2
|
24.1
|
1.0
|
FBA
|
A:W0T502
|
4.2
|
33.5
|
0.6
|
C
|
A:PHE331
|
4.3
|
14.2
|
1.0
|
CE1
|
A:PHE328
|
4.3
|
21.2
|
1.0
|
CD2
|
A:PHE328
|
4.3
|
20.7
|
1.0
|
CG
|
A:LEU75
|
4.3
|
24.5
|
1.0
|
CAV
|
A:W0T502
|
4.4
|
38.1
|
0.6
|
CAT
|
A:W0T502
|
4.4
|
56.5
|
0.4
|
CGA
|
A:HEM501
|
4.5
|
11.3
|
1.0
|
FBD
|
A:W0T502
|
4.6
|
57.6
|
0.4
|
CD2
|
A:LEU75
|
4.6
|
24.8
|
1.0
|
OG
|
A:SER72
|
4.7
|
23.7
|
1.0
|
FBE
|
A:W0T502
|
4.7
|
56.8
|
0.4
|
CAW
|
A:W0T502
|
4.9
|
37.7
|
0.6
|
CA
|
A:ALA330
|
5.0
|
15.7
|
1.0
|
CE
|
A:MET354
|
5.0
|
20.7
|
1.0
|
|
Fluorine binding site 5 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 5 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:41.7
occ:0.60
|
FAZ
|
A:W0T502
|
0.0
|
41.7
|
0.6
|
CAW
|
A:W0T502
|
1.3
|
37.7
|
0.6
|
FBC
|
A:W0T502
|
1.8
|
56.6
|
0.4
|
FAX
|
A:W0T502
|
2.1
|
38.7
|
0.6
|
FAY
|
A:W0T502
|
2.2
|
34.6
|
0.6
|
FBD
|
A:W0T502
|
2.3
|
57.6
|
0.4
|
CAV
|
A:W0T502
|
2.3
|
38.1
|
0.6
|
CAU
|
A:W0T502
|
2.3
|
56.4
|
0.4
|
FBA
|
A:W0T502
|
2.5
|
56.9
|
0.4
|
FBB
|
A:W0T502
|
2.6
|
40.4
|
0.6
|
CE1
|
A:PHE328
|
2.6
|
21.2
|
1.0
|
CZ
|
A:PHE328
|
2.9
|
21.6
|
1.0
|
CAV
|
A:W0T502
|
2.9
|
55.6
|
0.4
|
FBA
|
A:W0T502
|
2.9
|
33.5
|
0.6
|
FAX
|
A:W0T502
|
3.2
|
56.0
|
0.4
|
CAW
|
A:W0T502
|
3.6
|
54.5
|
0.4
|
CAU
|
A:W0T502
|
3.6
|
37.5
|
0.6
|
CD1
|
A:LEU437
|
3.7
|
23.8
|
1.0
|
CD1
|
A:PHE328
|
3.7
|
20.8
|
1.0
|
CAT
|
A:W0T502
|
3.8
|
56.5
|
0.4
|
O
|
A:LEU437
|
3.9
|
20.4
|
1.0
|
FBC
|
A:W0T502
|
3.9
|
38.4
|
0.6
|
FBG
|
A:W0T502
|
4.0
|
57.5
|
0.4
|
FBE
|
A:W0T502
|
4.0
|
38.8
|
0.6
|
FBB
|
A:W0T502
|
4.0
|
56.2
|
0.4
|
CE2
|
A:PHE328
|
4.0
|
21.1
|
1.0
|
FAY
|
A:W0T502
|
4.1
|
53.4
|
0.4
|
FBE
|
A:W0T502
|
4.1
|
56.8
|
0.4
|
CD2
|
A:LEU75
|
4.3
|
24.8
|
1.0
|
CAT
|
A:W0T502
|
4.4
|
37.3
|
0.6
|
CG
|
A:LEU437
|
4.5
|
23.0
|
1.0
|
CAS
|
A:W0T502
|
4.5
|
56.8
|
0.4
|
FBD
|
A:W0T502
|
4.6
|
37.7
|
0.6
|
FBF
|
A:W0T502
|
4.7
|
57.4
|
0.4
|
CG
|
A:PHE328
|
4.7
|
20.1
|
1.0
|
O
|
A:ALA330
|
4.7
|
17.4
|
1.0
|
FBF
|
A:W0T502
|
4.7
|
39.0
|
0.6
|
FAZ
|
A:W0T502
|
4.8
|
53.1
|
0.4
|
CD2
|
A:PHE328
|
4.8
|
20.7
|
1.0
|
C
|
A:LEU437
|
4.8
|
20.8
|
1.0
|
CB
|
A:ALA74
|
4.9
|
27.0
|
1.0
|
FBH
|
A:W0T502
|
4.9
|
58.6
|
0.4
|
CA
|
A:LEU437
|
5.0
|
21.6
|
1.0
|
|
Fluorine binding site 6 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 6 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:53.1
occ:0.40
|
FAZ
|
A:W0T502
|
0.0
|
53.1
|
0.4
|
CAW
|
A:W0T502
|
1.3
|
54.5
|
0.4
|
FAY
|
A:W0T502
|
2.1
|
53.4
|
0.4
|
FAX
|
A:W0T502
|
2.2
|
56.0
|
0.4
|
CAV
|
A:W0T502
|
2.3
|
55.6
|
0.4
|
FBB
|
A:W0T502
|
2.5
|
56.2
|
0.4
|
FBF
|
A:W0T502
|
2.6
|
57.4
|
0.4
|
CB
|
A:SER72
|
3.1
|
23.0
|
1.0
|
OG
|
A:SER72
|
3.2
|
23.7
|
1.0
|
CAU
|
A:W0T502
|
3.2
|
56.4
|
0.4
|
CAT
|
A:W0T502
|
3.2
|
56.5
|
0.4
|
FBB
|
A:W0T502
|
3.3
|
40.4
|
0.6
|
FBA
|
A:W0T502
|
3.4
|
56.9
|
0.4
|
FBE
|
A:W0T502
|
3.4
|
56.8
|
0.4
|
O
|
A:HOH645
|
3.6
|
12.2
|
1.0
|
CE
|
A:MET354
|
3.6
|
20.7
|
1.0
|
FBC
|
A:W0T502
|
3.6
|
56.6
|
0.4
|
CB
|
A:SER332
|
3.7
|
14.7
|
1.0
|
N
|
A:SER332
|
3.8
|
14.1
|
1.0
|
O
|
A:ALA330
|
3.8
|
17.4
|
1.0
|
CA
|
A:PHE331
|
4.0
|
14.4
|
1.0
|
C
|
A:PHE331
|
4.1
|
14.2
|
1.0
|
CA
|
A:SER72
|
4.3
|
22.4
|
1.0
|
N
|
A:SER72
|
4.3
|
20.5
|
1.0
|
SD
|
A:MET354
|
4.3
|
20.8
|
1.0
|
CA
|
A:SER332
|
4.4
|
14.1
|
1.0
|
C
|
A:ALA330
|
4.4
|
15.8
|
1.0
|
FBD
|
A:W0T502
|
4.4
|
57.6
|
0.4
|
CG
|
A:LEU75
|
4.5
|
24.5
|
1.0
|
FBF
|
A:W0T502
|
4.5
|
39.0
|
0.6
|
CAV
|
A:W0T502
|
4.6
|
38.1
|
0.6
|
N
|
A:PHE331
|
4.6
|
14.5
|
1.0
|
CAS
|
A:W0T502
|
4.7
|
56.8
|
0.4
|
CD1
|
A:LEU75
|
4.7
|
24.1
|
1.0
|
FAZ
|
A:W0T502
|
4.8
|
41.7
|
0.6
|
CZ
|
A:PHE328
|
4.9
|
21.6
|
1.0
|
OG
|
A:SER332
|
4.9
|
15.2
|
1.0
|
FBA
|
A:W0T502
|
4.9
|
33.5
|
0.6
|
O
|
A:PHE331
|
5.0
|
14.3
|
1.0
|
|
Fluorine binding site 7 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 7 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:33.5
occ:0.60
|
FBA
|
A:W0T502
|
0.0
|
33.5
|
0.6
|
CAV
|
A:W0T502
|
1.3
|
38.1
|
0.6
|
FBA
|
A:W0T502
|
1.7
|
56.9
|
0.4
|
FBB
|
A:W0T502
|
2.2
|
40.4
|
0.6
|
CAU
|
A:W0T502
|
2.3
|
37.5
|
0.6
|
FBD
|
A:W0T502
|
2.4
|
57.6
|
0.4
|
CAW
|
A:W0T502
|
2.4
|
37.7
|
0.6
|
FBD
|
A:W0T502
|
2.4
|
37.7
|
0.6
|
FAY
|
A:W0T502
|
2.6
|
34.6
|
0.6
|
CAV
|
A:W0T502
|
2.6
|
55.6
|
0.4
|
FAZ
|
A:W0T502
|
2.9
|
41.7
|
0.6
|
FBB
|
A:W0T502
|
2.9
|
56.2
|
0.4
|
FBC
|
A:W0T502
|
3.0
|
38.4
|
0.6
|
CAU
|
A:W0T502
|
3.0
|
56.4
|
0.4
|
O
|
A:ALA330
|
3.1
|
17.4
|
1.0
|
N
|
A:ALA330
|
3.2
|
15.7
|
1.0
|
FAX
|
A:W0T502
|
3.5
|
38.7
|
0.6
|
CD
|
A:PRO329
|
3.6
|
16.9
|
1.0
|
CAT
|
A:W0T502
|
3.6
|
37.3
|
0.6
|
CB
|
A:ALA330
|
3.7
|
15.8
|
1.0
|
CA
|
A:ALA330
|
3.7
|
15.7
|
1.0
|
FBC
|
A:W0T502
|
3.7
|
56.6
|
0.4
|
C
|
A:ALA330
|
3.8
|
15.8
|
1.0
|
CZ
|
A:PHE328
|
3.8
|
21.6
|
1.0
|
CE1
|
A:PHE328
|
3.8
|
21.2
|
1.0
|
FBF
|
A:W0T502
|
3.8
|
39.0
|
0.6
|
N
|
A:PRO329
|
3.9
|
16.8
|
1.0
|
CG
|
A:PRO329
|
3.9
|
16.8
|
1.0
|
CAW
|
A:W0T502
|
4.0
|
54.5
|
0.4
|
CE2
|
A:PHE328
|
4.1
|
21.1
|
1.0
|
CD1
|
A:PHE328
|
4.1
|
20.8
|
1.0
|
C
|
A:PRO329
|
4.2
|
15.7
|
1.0
|
CAT
|
A:W0T502
|
4.2
|
56.5
|
0.4
|
FBE
|
A:W0T502
|
4.2
|
38.8
|
0.6
|
FAY
|
A:W0T502
|
4.2
|
53.4
|
0.4
|
FBH
|
A:W0T502
|
4.3
|
58.6
|
0.4
|
CD2
|
A:PHE328
|
4.4
|
20.7
|
1.0
|
C
|
A:PHE328
|
4.4
|
17.6
|
1.0
|
CG
|
A:PHE328
|
4.5
|
20.1
|
1.0
|
CA
|
A:PRO329
|
4.5
|
16.5
|
1.0
|
FBF
|
A:W0T502
|
4.5
|
57.4
|
0.4
|
FAX
|
A:W0T502
|
4.6
|
56.0
|
0.4
|
FBG
|
A:W0T502
|
4.6
|
57.5
|
0.4
|
CAS
|
A:W0T502
|
4.6
|
56.8
|
0.4
|
O
|
A:LEU437
|
4.6
|
20.4
|
1.0
|
O
|
A:HOH888
|
4.7
|
27.9
|
1.0
|
CAS
|
A:W0T502
|
4.8
|
35.5
|
0.6
|
CB
|
A:PRO329
|
4.8
|
16.7
|
1.0
|
FBH
|
A:W0T502
|
4.8
|
35.2
|
0.6
|
FAZ
|
A:W0T502
|
4.9
|
53.1
|
0.4
|
O
|
A:PHE328
|
4.9
|
18.0
|
1.0
|
|
Fluorine binding site 8 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 8 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:56.9
occ:0.40
|
FBA
|
A:W0T502
|
0.0
|
56.9
|
0.4
|
CAV
|
A:W0T502
|
1.3
|
55.6
|
0.4
|
FBB
|
A:W0T502
|
1.7
|
40.4
|
0.6
|
FBA
|
A:W0T502
|
1.7
|
33.5
|
0.6
|
CAV
|
A:W0T502
|
2.0
|
38.1
|
0.6
|
FBB
|
A:W0T502
|
2.2
|
56.2
|
0.4
|
O
|
A:ALA330
|
2.3
|
17.4
|
1.0
|
CAU
|
A:W0T502
|
2.3
|
56.4
|
0.4
|
CAW
|
A:W0T502
|
2.3
|
54.5
|
0.4
|
FAZ
|
A:W0T502
|
2.5
|
41.7
|
0.6
|
FAY
|
A:W0T502
|
2.5
|
53.4
|
0.4
|
FBD
|
A:W0T502
|
2.6
|
57.6
|
0.4
|
CZ
|
A:PHE328
|
2.7
|
21.6
|
1.0
|
CAW
|
A:W0T502
|
2.7
|
37.7
|
0.6
|
FBC
|
A:W0T502
|
2.9
|
56.6
|
0.4
|
FAX
|
A:W0T502
|
3.0
|
56.0
|
0.4
|
CE2
|
A:PHE328
|
3.1
|
21.1
|
1.0
|
CE1
|
A:PHE328
|
3.3
|
21.2
|
1.0
|
C
|
A:ALA330
|
3.3
|
15.8
|
1.0
|
FAZ
|
A:W0T502
|
3.4
|
53.1
|
0.4
|
CAU
|
A:W0T502
|
3.4
|
37.5
|
0.6
|
FAY
|
A:W0T502
|
3.5
|
34.6
|
0.6
|
CAT
|
A:W0T502
|
3.6
|
56.5
|
0.4
|
FBD
|
A:W0T502
|
3.7
|
37.7
|
0.6
|
FBF
|
A:W0T502
|
3.8
|
57.4
|
0.4
|
FAX
|
A:W0T502
|
3.8
|
38.7
|
0.6
|
N
|
A:ALA330
|
3.9
|
15.7
|
1.0
|
CD2
|
A:PHE328
|
3.9
|
20.7
|
1.0
|
CA
|
A:ALA330
|
3.9
|
15.7
|
1.0
|
FBF
|
A:W0T502
|
4.0
|
39.0
|
0.6
|
CD1
|
A:PHE328
|
4.1
|
20.8
|
1.0
|
CB
|
A:ALA330
|
4.1
|
15.8
|
1.0
|
CAT
|
A:W0T502
|
4.3
|
37.3
|
0.6
|
FBC
|
A:W0T502
|
4.3
|
38.4
|
0.6
|
CG
|
A:PHE328
|
4.4
|
20.1
|
1.0
|
N
|
A:PHE331
|
4.4
|
14.5
|
1.0
|
FBE
|
A:W0T502
|
4.4
|
56.8
|
0.4
|
FBE
|
A:W0T502
|
4.6
|
38.8
|
0.6
|
FBH
|
A:W0T502
|
4.6
|
58.6
|
0.4
|
CAS
|
A:W0T502
|
4.6
|
56.8
|
0.4
|
CA
|
A:PHE331
|
4.6
|
14.4
|
1.0
|
FBG
|
A:W0T502
|
4.8
|
57.5
|
0.4
|
|
Fluorine binding site 9 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 9 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:40.4
occ:0.60
|
FBB
|
A:W0T502
|
0.0
|
40.4
|
0.6
|
CAU
|
A:W0T502
|
1.0
|
56.4
|
0.4
|
CAV
|
A:W0T502
|
1.1
|
55.6
|
0.4
|
FBD
|
A:W0T502
|
1.3
|
57.6
|
0.4
|
CAV
|
A:W0T502
|
1.3
|
38.1
|
0.6
|
FBB
|
A:W0T502
|
1.7
|
56.2
|
0.4
|
FBA
|
A:W0T502
|
1.7
|
56.9
|
0.4
|
CAT
|
A:W0T502
|
2.1
|
56.5
|
0.4
|
FBC
|
A:W0T502
|
2.2
|
56.6
|
0.4
|
FBA
|
A:W0T502
|
2.2
|
33.5
|
0.6
|
CAW
|
A:W0T502
|
2.3
|
37.7
|
0.6
|
CAU
|
A:W0T502
|
2.4
|
37.5
|
0.6
|
FBF
|
A:W0T502
|
2.5
|
57.4
|
0.4
|
FBF
|
A:W0T502
|
2.5
|
39.0
|
0.6
|
FAZ
|
A:W0T502
|
2.6
|
41.7
|
0.6
|
CAW
|
A:W0T502
|
2.6
|
54.5
|
0.4
|
CAT
|
A:W0T502
|
2.7
|
37.3
|
0.6
|
FAX
|
A:W0T502
|
2.8
|
38.7
|
0.6
|
CAS
|
A:W0T502
|
2.9
|
56.8
|
0.4
|
FBH
|
A:W0T502
|
2.9
|
58.6
|
0.4
|
FBE
|
A:W0T502
|
2.9
|
38.8
|
0.6
|
FBD
|
A:W0T502
|
3.0
|
37.7
|
0.6
|
FAX
|
A:W0T502
|
3.1
|
56.0
|
0.4
|
FBE
|
A:W0T502
|
3.1
|
56.8
|
0.4
|
FBG
|
A:W0T502
|
3.2
|
57.5
|
0.4
|
FAZ
|
A:W0T502
|
3.3
|
53.1
|
0.4
|
FAY
|
A:W0T502
|
3.5
|
34.6
|
0.6
|
FBC
|
A:W0T502
|
3.5
|
38.4
|
0.6
|
FAY
|
A:W0T502
|
3.5
|
53.4
|
0.4
|
O
|
A:ALA330
|
3.6
|
17.4
|
1.0
|
CZ
|
A:PHE328
|
4.1
|
21.6
|
1.0
|
CAS
|
A:W0T502
|
4.2
|
35.5
|
0.6
|
CB
|
A:ALA330
|
4.2
|
15.8
|
1.0
|
CAR
|
A:W0T502
|
4.3
|
56.0
|
0.4
|
C
|
A:ALA330
|
4.3
|
15.8
|
1.0
|
OG
|
A:SER72
|
4.5
|
23.7
|
1.0
|
CE1
|
A:PHE328
|
4.5
|
21.2
|
1.0
|
CE
|
A:MET354
|
4.5
|
20.7
|
1.0
|
FBH
|
A:W0T502
|
4.6
|
35.2
|
0.6
|
CA
|
A:ALA330
|
4.7
|
15.7
|
1.0
|
FBI
|
A:W0T502
|
4.7
|
54.1
|
0.4
|
CE2
|
A:PHE328
|
4.8
|
21.1
|
1.0
|
N
|
A:ALA330
|
4.8
|
15.7
|
1.0
|
FBG
|
A:W0T502
|
4.8
|
31.7
|
0.6
|
CAP
|
A:W0T502
|
4.8
|
56.0
|
0.4
|
OAQ
|
A:W0T502
|
4.9
|
57.0
|
0.4
|
|
Fluorine binding site 10 out
of 26 in 5b2x
Go back to
Fluorine Binding Sites List in 5b2x
Fluorine binding site 10 out
of 26 in the Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Crystal Structure of P450BM3 Mutant with N-Perfluoroheptanoyl-L- Tryptophan within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:56.2
occ:0.40
|
FBB
|
A:W0T502
|
0.0
|
56.2
|
0.4
|
CAV
|
A:W0T502
|
1.3
|
55.6
|
0.4
|
FBB
|
A:W0T502
|
1.7
|
40.4
|
0.6
|
FBF
|
A:W0T502
|
2.1
|
57.4
|
0.4
|
FBA
|
A:W0T502
|
2.2
|
56.9
|
0.4
|
CAW
|
A:W0T502
|
2.3
|
54.5
|
0.4
|
CAU
|
A:W0T502
|
2.3
|
56.4
|
0.4
|
FAZ
|
A:W0T502
|
2.5
|
53.1
|
0.4
|
CAT
|
A:W0T502
|
2.7
|
56.5
|
0.4
|
CAV
|
A:W0T502
|
2.7
|
38.1
|
0.6
|
FBF
|
A:W0T502
|
2.7
|
39.0
|
0.6
|
O
|
A:ALA330
|
2.8
|
17.4
|
1.0
|
FBD
|
A:W0T502
|
2.9
|
57.6
|
0.4
|
FBA
|
A:W0T502
|
2.9
|
33.5
|
0.6
|
CE
|
A:MET354
|
3.0
|
20.7
|
1.0
|
FAY
|
A:W0T502
|
3.0
|
53.4
|
0.4
|
C
|
A:ALA330
|
3.2
|
15.8
|
1.0
|
CB
|
A:ALA330
|
3.2
|
15.8
|
1.0
|
FAX
|
A:W0T502
|
3.4
|
56.0
|
0.4
|
FBH
|
A:W0T502
|
3.4
|
58.6
|
0.4
|
CAU
|
A:W0T502
|
3.4
|
37.5
|
0.6
|
FBD
|
A:W0T502
|
3.5
|
37.7
|
0.6
|
FBC
|
A:W0T502
|
3.5
|
56.6
|
0.4
|
CAT
|
A:W0T502
|
3.6
|
37.3
|
0.6
|
CAS
|
A:W0T502
|
3.6
|
56.8
|
0.4
|
CA
|
A:ALA330
|
3.7
|
15.7
|
1.0
|
FBE
|
A:W0T502
|
3.7
|
56.8
|
0.4
|
N
|
A:PHE331
|
3.9
|
14.5
|
1.0
|
CAW
|
A:W0T502
|
3.9
|
37.7
|
0.6
|
FAZ
|
A:W0T502
|
4.0
|
41.7
|
0.6
|
FBE
|
A:W0T502
|
4.1
|
38.8
|
0.6
|
CA
|
A:PHE331
|
4.2
|
14.4
|
1.0
|
N
|
A:ALA330
|
4.3
|
15.7
|
1.0
|
FBG
|
A:W0T502
|
4.4
|
57.5
|
0.4
|
FAX
|
A:W0T502
|
4.5
|
38.7
|
0.6
|
SD
|
A:MET354
|
4.5
|
20.8
|
1.0
|
C
|
A:PHE331
|
4.6
|
14.2
|
1.0
|
OG
|
A:SER72
|
4.7
|
23.7
|
1.0
|
FBC
|
A:W0T502
|
4.7
|
38.4
|
0.6
|
CZ
|
A:PHE328
|
4.7
|
21.6
|
1.0
|
CB
|
A:SER72
|
4.8
|
23.0
|
1.0
|
OAQ
|
A:W0T502
|
4.8
|
57.0
|
0.4
|
CAR
|
A:W0T502
|
4.8
|
56.0
|
0.4
|
CAP
|
A:W0T502
|
4.8
|
56.0
|
0.4
|
CAS
|
A:W0T502
|
4.9
|
35.5
|
0.6
|
OAQ
|
A:W0T502
|
4.9
|
30.8
|
0.6
|
FBH
|
A:W0T502
|
4.9
|
35.2
|
0.6
|
CE2
|
A:PHE328
|
4.9
|
21.1
|
1.0
|
FAY
|
A:W0T502
|
4.9
|
34.6
|
0.6
|
N
|
A:SER332
|
5.0
|
14.1
|
1.0
|
|
Reference:
Z.Cong,
O.Shoji,
C.Kasai,
H.Sugimoto,
Y.Shiro,
Y.Watanabe.
Crystal Structure of P450BM3 with Decoy Molecules To Be Published.
Page generated: Thu Aug 1 08:01:29 2024
|