Fluorine in PDB 5bni: Porcine CD38 Complexed with Complexed with A Covalent Intermediate, Ribo-F-Ribose-5'-Phosphate

The structure of Porcine CD38 Complexed with Complexed with A Covalent Intermediate, Ribo-F-Ribose-5'-Phosphate, PDB code: 5bni was solved by K.Y.Ting, C.F.P.Leung, R.M.Graeff, H.C.Lee, Q.Hao, M.Kotaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.50
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	69.507, 104.973, 63.785, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 27.8

The binding sites of Fluorine atom in the Porcine CD38 Complexed with Complexed with A Covalent Intermediate, Ribo-F-Ribose-5'-Phosphate (pdb code 5bni). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Porcine CD38 Complexed with Complexed with A Covalent Intermediate, Ribo-F-Ribose-5'-Phosphate, PDB code: 5bni:

Fluorine binding site 1 out of 1 in the Porcine CD38 Complexed with Complexed with A Covalent Intermediate, Ribo-F-Ribose-5'-Phosphate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Porcine CD38 Complexed with Complexed with A Covalent Intermediate, Ribo-F-Ribose-5'-Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ B:F301 b:81.9 occ:1.00 F2'N B:AVW301 0.0 81.9 1.0 C2'N B:AVW301 1.4 87.4 1.0 C1'N B:AVW301 2.4 82.2 1.0 C3'N B:AVW301 2.4 96.4 1.0 O3'N B:AVW301 2.5 99.8 1.0 CD1 B:PHE129 3.2 14.2 1.0 OE2 B:GLU230 3.3 52.6 1.0 CD2 B:PHE200 3.4 36.2 1.0 C4'N B:AVW301 3.4 82.3 1.0 O4'N B:AVW301 3.5 88.8 1.0 CE1 B:PHE129 3.6 30.7 1.0 CB B:LEU150 3.6 49.1 1.0 CE2 B:PHE200 3.6 42.0 1.0 CD B:GLU230 3.7 51.4 1.0 OE1 B:GLU230 3.8 55.4 1.0 N B:LEU150 4.2 51.9 1.0 CD1 B:LEU150 4.2 34.5 1.0 CG B:LEU150 4.3 36.8 1.0 CD2 B:LEU150 4.4 44.6 1.0 CG B:PHE129 4.4 33.9 1.0 CA B:LEU150 4.4 51.5 1.0 O B:VAL128 4.5 47.6 1.0 CG B:PHE200 4.6 51.0 1.0 CG B:GLU230 4.7 43.2 1.0 NE1 B:TRP130 4.7 69.3 1.0 CA B:PHE129 4.7 45.8 1.0 C5'N B:AVW301 4.8 85.1 1.0 CB B:PHE129 4.8 41.0 1.0 CZ B:PHE200 4.9 48.5 1.0 CZ B:PHE129 4.9 23.6 1.0

K.Y.Ting, C.F.Leung, R.M.Graeff, H.C.Lee, Q.Hao, M.Kotaka. Porcine CD38 Exhibits Prominent Secondary Nad(+) Cyclase Activity. Protein Sci. V. 25 650 2016.
ISSN: ESSN 1469-896X
PubMed: 26660500
DOI: 10.1002/PRO.2859