Fluorine in PDB 5do9: Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q

The structure of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q, PDB code: 5do9 was solved by V.G.Taylor, J.J.G.Tesmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	173.946, 95.881, 112.898, 90.00, 94.31, 90.00
R / Rfree (%)	17.8 / 22.6

The structure of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q also contains other interesting chemical elements:

Magnesium	(Mg)	3 atoms
Aluminium	(Al)	3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q (pdb code 5do9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q, PDB code: 5do9:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ A:F402 b:28.1 occ:1.00 F1 A:ALF402 0.0 28.1 1.0 AL A:ALF402 1.7 28.1 1.0 F3 A:ALF402 2.5 27.7 1.0 F4 A:ALF402 2.5 27.0 1.0 NH1 A:ARG183 2.6 33.0 1.0 O1B A:GDP401 2.6 23.8 1.0 O A:HOH525 2.8 30.1 1.0 N A:THR186 2.8 26.8 1.0 O A:HOH512 3.0 23.6 1.0 NH2 A:ARG183 3.0 30.1 1.0 CA A:PRO185 3.1 27.2 1.0 CZ A:ARG183 3.1 31.4 1.0 MG A:MG403 3.3 25.2 1.0 C A:PRO185 3.4 26.6 1.0 F2 A:ALF402 3.6 26.5 1.0 PB A:GDP401 3.8 24.1 1.0 OG1 A:THR186 3.9 25.2 1.0 CB A:PRO185 3.9 27.7 1.0 O A:VAL184 3.9 31.0 1.0 CA A:THR186 4.0 26.6 1.0 O2B A:GDP401 4.0 23.5 1.0 CB A:THR186 4.0 25.8 1.0 N A:PRO185 4.2 29.0 1.0 O3A A:GDP401 4.3 24.3 1.0 O A:THR186 4.3 26.4 1.0 NE A:ARG183 4.3 31.2 1.0 O1A A:GDP401 4.4 26.6 1.0 C A:VAL184 4.5 29.9 1.0 O A:PRO185 4.6 26.3 1.0 C A:THR186 4.7 26.4 1.0 NE2 A:GLN209 4.7 24.2 1.0 N A:GLU49 4.7 33.0 1.0 O A:HOH509 4.7 23.1 1.0 CG A:PRO185 4.8 28.2 1.0 OE1 A:GLN209 4.8 24.1 1.0

Fluorine binding site 2 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ A:F402 b:26.5 occ:1.00 F2 A:ALF402 0.0 26.5 1.0 AL A:ALF402 1.8 28.1 1.0 F4 A:ALF402 2.5 27.0 1.0 O A:HOH525 2.5 30.1 1.0 O1B A:GDP401 2.6 23.8 1.0 F3 A:ALF402 2.6 27.7 1.0 NZ A:LYS52 2.7 26.1 1.0 N A:GLY208 2.9 27.8 1.0 CA A:GLY48 3.3 30.4 1.0 CA A:GLY208 3.3 27.0 1.0 CE A:LYS52 3.5 26.9 1.0 PB A:GDP401 3.5 24.1 1.0 F1 A:ALF402 3.6 28.1 1.0 N A:GLU49 3.7 33.0 1.0 O3B A:GDP401 3.8 22.6 1.0 O A:THR47 3.9 25.7 1.0 C A:GLY207 3.9 26.9 1.0 C A:GLY48 4.0 30.7 1.0 N A:GLY48 4.0 28.4 1.0 CA A:GLY207 4.2 26.3 1.0 O2B A:GDP401 4.2 23.5 1.0 OE1 A:GLN209 4.2 24.1 1.0 O A:VAL206 4.2 26.4 1.0 C A:THR47 4.3 26.6 1.0 C A:GLY208 4.3 26.4 1.0 O A:HOH509 4.3 23.1 1.0 MG A:MG403 4.4 25.2 1.0 NE2 A:GLN209 4.4 24.2 1.0 N A:GLN209 4.5 25.8 1.0 CD A:GLN209 4.6 25.4 1.0 O A:GLY46 4.8 25.3 1.0 O3A A:GDP401 4.8 24.3 1.0 O A:GLY207 4.9 27.0 1.0 CA A:GLU49 4.9 32.3 1.0 CD A:LYS52 5.0 26.2 1.0

Fluorine binding site 3 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ A:F402 b:27.7 occ:1.00 F3 A:ALF402 0.0 27.7 1.0 AL A:ALF402 1.8 28.1 1.0 MG A:MG403 2.0 25.2 1.0 F1 A:ALF402 2.5 28.1 1.0 O A:HOH509 2.5 23.1 1.0 O1B A:GDP401 2.5 23.8 1.0 F2 A:ALF402 2.6 26.5 1.0 O A:HOH525 2.7 30.1 1.0 O2B A:GDP401 2.8 23.5 1.0 OG1 A:THR186 2.9 25.2 1.0 CB A:THR186 2.9 25.8 1.0 PB A:GDP401 3.0 24.1 1.0 O A:HOH512 3.2 23.6 1.0 N A:THR186 3.5 26.8 1.0 F4 A:ALF402 3.6 27.0 1.0 CA A:THR186 3.7 26.6 1.0 O A:VAL206 3.8 26.4 1.0 OG A:SER53 3.9 23.0 1.0 O3B A:GDP401 4.1 22.6 1.0 NZ A:LYS52 4.1 26.1 1.0 O A:THR186 4.1 26.4 1.0 CG2 A:THR186 4.1 25.8 1.0 CA A:GLY207 4.3 26.3 1.0 CE A:LYS52 4.3 26.9 1.0 O3A A:GDP401 4.3 24.3 1.0 C A:THR186 4.4 26.4 1.0 NH1 A:ARG183 4.5 33.0 1.0 N A:GLY208 4.5 27.8 1.0 C A:PRO185 4.6 26.6 1.0 C A:VAL206 4.7 26.2 1.0 C A:GLY207 4.9 26.9 1.0 N A:GLY207 4.9 26.6 1.0 CB A:SER53 5.0 24.5 1.0

Fluorine binding site 4 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ A:F402 b:27.0 occ:1.00 F4 A:ALF402 0.0 27.0 1.0 AL A:ALF402 1.8 28.1 1.0 F1 A:ALF402 2.5 28.1 1.0 F2 A:ALF402 2.5 26.5 1.0 O A:HOH525 2.7 30.1 1.0 O1B A:GDP401 2.7 23.8 1.0 NE2 A:GLN209 2.7 24.2 1.0 N A:GLU49 2.9 33.0 1.0 NH2 A:ARG183 3.0 30.1 1.0 CA A:GLY48 3.1 30.4 1.0 C A:GLY48 3.5 30.7 1.0 CD A:GLN209 3.5 25.4 1.0 OE1 A:GLN209 3.5 24.1 1.0 F3 A:ALF402 3.6 27.7 1.0 NH1 A:ARG183 3.6 33.0 1.0 CZ A:ARG183 3.8 31.4 1.0 CA A:GLU49 4.0 32.3 1.0 O A:HOH519 4.0 35.1 1.0 PB A:GDP401 4.2 24.1 1.0 CG A:GLU49 4.3 36.7 1.0 N A:GLY48 4.5 28.4 1.0 N A:GLY208 4.6 27.8 1.0 CB A:GLU49 4.6 33.8 1.0 O A:GLY48 4.6 31.7 1.0 O3A A:GDP401 4.7 24.3 1.0 NZ A:LYS52 4.9 26.1 1.0 O3B A:GDP401 4.9 22.6 1.0 CG A:GLN209 4.9 26.4 1.0 N A:THR186 5.0 26.8 1.0 N A:GLN209 5.0 25.8 1.0

Fluorine binding site 5 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ C:F402 b:27.7 occ:1.00 F1 C:ALF402 0.0 27.7 1.0 AL C:ALF402 1.8 25.7 1.0 F3 C:ALF402 2.4 24.3 1.0 F4 C:ALF402 2.5 24.9 1.0 O3B C:GDP401 2.6 22.4 1.0 NH1 C:ARG183 2.7 32.1 1.0 O C:HOH517 2.7 26.3 1.0 N C:THR186 2.8 30.8 1.0 O C:HOH502 2.9 27.4 1.0 NH2 C:ARG183 3.0 31.2 1.0 CA C:PRO185 3.1 33.9 1.0 MG C:MG403 3.1 25.8 1.0 CZ C:ARG183 3.2 32.2 1.0 C C:PRO185 3.4 32.0 1.0 F2 C:ALF402 3.6 24.3 1.0 OG1 C:THR186 3.6 30.2 1.0 PB C:GDP401 3.8 23.8 1.0 O C:VAL184 3.9 35.5 1.0 CA C:THR186 3.9 29.2 1.0 CB C:PRO185 4.0 33.8 1.0 CB C:THR186 4.0 29.2 1.0 O2B C:GDP401 4.1 22.0 1.0 N C:PRO185 4.1 36.2 1.0 O2A C:GDP401 4.1 25.8 1.0 O C:THR186 4.4 29.1 1.0 C C:VAL184 4.4 36.4 1.0 O3A C:GDP401 4.4 24.9 1.0 NE C:ARG183 4.5 35.3 1.0 O C:PRO185 4.6 31.8 1.0 C C:THR186 4.7 28.4 1.0 O C:HOH505 4.8 24.0 1.0 NE2 C:GLN209 4.8 27.1 1.0 N C:GLU49 4.8 36.9 1.0 CG C:PRO185 4.9 34.7 1.0 OE1 C:GLN209 4.9 25.5 1.0

Fluorine binding site 6 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ C:F402 b:24.3 occ:1.00 F2 C:ALF402 0.0 24.3 1.0 AL C:ALF402 1.8 25.7 1.0 F4 C:ALF402 2.5 24.9 1.0 F3 C:ALF402 2.6 24.3 1.0 O3B C:GDP401 2.7 22.4 1.0 O C:HOH517 2.7 26.3 1.0 NZ C:LYS52 2.8 23.5 1.0 N C:GLY208 2.8 29.1 1.0 CA C:GLY208 3.3 28.9 1.0 CA C:GLY48 3.3 32.2 1.0 CE C:LYS52 3.6 23.2 1.0 F1 C:ALF402 3.6 27.7 1.0 PB C:GDP401 3.6 23.8 1.0 N C:GLU49 3.6 36.9 1.0 O C:THR47 3.9 28.3 1.0 C C:GLY207 3.9 28.8 1.0 O1B C:GDP401 3.9 22.7 1.0 C C:GLY48 4.0 32.5 1.0 N C:GLY48 4.1 32.1 1.0 OE1 C:GLN209 4.1 25.5 1.0 NE2 C:GLN209 4.2 27.1 1.0 CA C:GLY207 4.2 27.3 1.0 MG C:MG403 4.2 25.8 1.0 C C:THR47 4.2 28.8 1.0 C C:GLY208 4.2 31.1 1.0 O C:VAL206 4.3 25.9 1.0 N C:GLN209 4.4 30.4 1.0 O2B C:GDP401 4.4 22.0 1.0 CD C:GLN209 4.5 26.6 1.0 O C:HOH505 4.6 24.0 1.0 O C:GLY46 4.7 24.6 1.0 CA C:GLU49 4.9 39.0 1.0 O C:GLY207 4.9 28.7 1.0 O3A C:GDP401 5.0 24.9 1.0

Fluorine binding site 7 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ C:F402 b:24.3 occ:1.00 F3 C:ALF402 0.0 24.3 1.0 AL C:ALF402 1.8 25.7 1.0 MG C:MG403 1.9 25.8 1.0 F1 C:ALF402 2.4 27.7 1.0 O3B C:GDP401 2.6 22.4 1.0 F2 C:ALF402 2.6 24.3 1.0 O C:HOH505 2.6 24.0 1.0 O C:HOH517 2.6 26.3 1.0 OG1 C:THR186 2.7 30.2 1.0 CB C:THR186 3.0 29.2 1.0 O2B C:GDP401 3.0 22.0 1.0 O C:HOH502 3.1 27.4 1.0 PB C:GDP401 3.2 23.8 1.0 N C:THR186 3.5 30.8 1.0 F4 C:ALF402 3.6 24.9 1.0 O C:VAL206 3.6 25.9 1.0 CA C:THR186 3.8 29.2 1.0 NZ C:LYS52 4.0 23.5 1.0 OG C:SER53 4.1 25.7 1.0 CA C:GLY207 4.1 27.3 1.0 O1B C:GDP401 4.2 22.7 1.0 CE C:LYS52 4.2 23.2 1.0 CG2 C:THR186 4.2 28.9 1.0 O C:THR186 4.2 29.1 1.0 N C:GLY208 4.3 29.1 1.0 C C:THR186 4.4 28.4 1.0 C C:VAL206 4.5 26.5 1.0 O3A C:GDP401 4.5 24.9 1.0 NH1 C:ARG183 4.7 32.1 1.0 C C:PRO185 4.7 32.0 1.0 C C:GLY207 4.7 28.8 1.0 N C:GLY207 4.8 27.0 1.0 O2A C:GDP401 4.9 25.8 1.0

Fluorine binding site 8 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ C:F402 b:24.9 occ:1.00 F4 C:ALF402 0.0 24.9 1.0 AL C:ALF402 1.8 25.7 1.0 F2 C:ALF402 2.5 24.3 1.0 F1 C:ALF402 2.5 27.7 1.0 NE2 C:GLN209 2.7 27.1 1.0 O3B C:GDP401 2.7 22.4 1.0 O C:HOH517 2.8 26.3 1.0 NH2 C:ARG183 2.9 31.2 1.0 N C:GLU49 3.1 36.9 1.0 CA C:GLY48 3.3 32.2 1.0 CD C:GLN209 3.5 26.6 1.0 OE1 C:GLN209 3.5 25.5 1.0 F3 C:ALF402 3.6 24.3 1.0 C C:GLY48 3.6 32.5 1.0 NH1 C:ARG183 3.7 32.1 1.0 CZ C:ARG183 3.7 32.2 1.0 CA C:GLU49 4.1 39.0 1.0 PB C:GDP401 4.2 23.8 1.0 CG C:GLU49 4.2 48.0 1.0 O C:HOH534 4.4 32.5 1.0 N C:GLY48 4.6 32.1 1.0 CB C:GLU49 4.7 41.5 1.0 N C:GLY208 4.7 29.1 1.0 O C:GLY48 4.7 32.8 1.0 O3A C:GDP401 4.9 24.9 1.0 MG C:MG403 4.9 25.8 1.0 O1B C:GDP401 4.9 22.7 1.0 CG C:GLN209 4.9 29.0 1.0 N C:THR186 4.9 30.8 1.0 NZ C:LYS52 4.9 23.5 1.0 CA C:PRO185 5.0 33.9 1.0 NE C:ARG183 5.0 35.3 1.0

Fluorine binding site 9 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ E:F402 b:27.3 occ:1.00 F1 E:ALF402 0.0 27.3 1.0 AL E:ALF402 1.8 28.5 1.0 O1B E:GDP401 2.4 18.9 1.0 O E:HOH555 2.4 22.0 1.0 F3 E:ALF402 2.5 26.9 1.0 F4 E:ALF402 2.5 25.5 1.0 O E:HOH512 2.6 21.8 1.0 N E:THR186 2.8 25.5 1.0 NH1 E:ARG183 2.9 29.1 1.0 MG E:MG403 3.1 22.9 1.0 CA E:PRO185 3.2 26.5 1.0 NH2 E:ARG183 3.2 26.0 1.0 CZ E:ARG183 3.4 27.5 1.0 C E:PRO185 3.5 25.8 1.0 F2 E:ALF402 3.6 27.0 1.0 OG1 E:THR186 3.6 24.4 1.0 PB E:GDP401 3.6 20.3 1.0 O E:VAL184 3.8 28.8 1.0 CB E:THR186 3.9 25.5 1.0 CA E:THR186 3.9 26.1 1.0 O2B E:GDP401 3.9 20.2 1.0 N E:PRO185 4.2 27.1 1.0 CB E:PRO185 4.2 26.6 1.0 O3A E:GDP401 4.2 21.9 1.0 O1A E:GDP401 4.3 22.1 1.0 C E:VAL184 4.4 28.7 1.0 O E:THR186 4.4 27.2 1.0 C E:THR186 4.6 26.9 1.0 NE E:ARG183 4.7 26.6 1.0 O E:HOH504 4.7 28.6 1.0 O E:PRO185 4.7 24.1 1.0 N E:GLU49 4.8 28.5 1.0 NE2 E:GLN209 4.8 26.3 1.0 O3B E:GDP401 4.9 18.6 1.0 PA E:GDP401 5.0 23.8 1.0 OE1 E:GLN209 5.0 26.4 1.0

Fluorine binding site 10 out of 12 in the Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Structure of Regulator of G Protein Signaling 8 (RGS8) in Complex with ALF4-Activated Galpha-Q within 5.0Å range: probe atom residue distance (Å) B Occ E:F402 b:27.0 occ:1.00 F2 E:ALF402 0.0 27.0 1.0 AL E:ALF402 1.8 28.5 1.0 F3 E:ALF402 2.5 26.9 1.0 O E:HOH555 2.5 22.0 1.0 F4 E:ALF402 2.6 25.5 1.0 O1B E:GDP401 2.6 18.9 1.0 NZ E:LYS52 2.7 24.1 1.0 N E:GLY208 2.9 27.3 1.0 CA E:GLY208 3.3 25.9 1.0 CA E:GLY48 3.4 26.2 1.0 CE E:LYS52 3.4 23.2 1.0 F1 E:ALF402 3.6 27.3 1.0 PB E:GDP401 3.6 20.3 1.0 N E:GLU49 3.7 28.5 1.0 C E:GLY207 3.7 26.5 1.0 O3B E:GDP401 3.8 18.6 1.0 O E:THR47 4.0 21.9 1.0 CA E:GLY207 4.0 26.3 1.0 O E:VAL206 4.0 25.1 1.0 C E:GLY48 4.1 26.1 1.0 N E:GLY48 4.2 24.8 1.0 OE1 E:GLN209 4.2 26.4 1.0 NE2 E:GLN209 4.2 26.3 1.0 MG E:MG403 4.3 22.9 1.0 O E:HOH504 4.3 28.6 1.0 C E:GLY208 4.3 26.5 1.0 O2B E:GDP401 4.4 20.2 1.0 C E:THR47 4.4 24.3 1.0 N E:GLN209 4.5 25.2 1.0 CD E:GLN209 4.6 26.5 1.0 O E:GLY207 4.7 25.8 1.0 O E:GLY46 4.8 23.5 1.0 CD E:LYS52 4.9 23.3 1.0 C E:VAL206 4.9 25.8 1.0 CA E:GLU49 4.9 31.2 1.0 O3A E:GDP401 4.9 21.9 1.0 N E:GLY207 5.0 25.6 1.0

V.G.Taylor, P.A.Bommarito, J.J.Tesmer. Structure of the Regulator of G Protein Signaling 8 (RGS8)-G Alpha Q Complex: Molecular Basis For G Alpha Selectivity. J.Biol.Chem. V. 291 5138 2016.
ISSN: ESSN 1083-351X
PubMed: 26755720
DOI: 10.1074/JBC.M115.712075