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Fluorine in PDB 5dx6: Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate

Enzymatic activity of Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate

All present enzymatic activity of Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate:
2.2.1.6;

Protein crystallography data

The structure of Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate, PDB code: 5dx6 was solved by A.J.Latta, M.J.Mcleish, F.H.Andrews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.57 / 1.75
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 84.800, 134.010, 110.772, 90.00, 95.50, 90.00
R / Rfree (%) 15.1 / 19

Other elements in 5dx6:

The structure of Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate (pdb code 5dx6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate, PDB code: 5dx6:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 5dx6

Go back to Fluorine Binding Sites List in 5dx6
Fluorine binding site 1 out of 2 in the Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F604

b:53.3
occ:1.00
F10 A:5GY604 0.0 53.3 1.0
C09 A:5GY604 1.4 53.0 1.0
C07 A:5GY604 2.4 50.1 1.0
C06 A:5GY604 3.3 45.3 0.6
C04 A:5GY604 3.4 34.2 1.0
O08 A:5GY604 3.5 51.9 0.4
N05 A:5GY604 3.7 38.2 1.0
CG2 A:VAL480 4.5 38.2 1.0
OE1 A:GLN420 4.6 46.7 1.0
C03 A:5GY604 4.7 32.4 1.0
S11 A:5GY604 4.8 46.9 0.9
N01 A:5GY604 4.9 36.5 1.0
C24 A:5GY604 5.0 39.2 1.0

Fluorine binding site 2 out of 2 in 5dx6

Go back to Fluorine Binding Sites List in 5dx6
Fluorine binding site 2 out of 2 in the Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Acetolactate Synthase From Klebsiella Pneumoniae Soaked with Beta- Fluoropyruvate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F604

b:67.0
occ:1.00
F05 B:65S604 0.0 67.0 1.0
C04 B:65S604 1.3 67.2 1.0
C03 B:65S604 2.3 67.5 1.0
C02 B:65S604 2.6 64.1 1.0
CD2 B:TYR406 2.8 54.1 1.0
O B:ARG403 3.0 28.7 1.0
O01 B:65S604 3.1 65.8 1.0
O07 B:65S604 3.2 60.0 1.0
O B:ALA402 3.4 26.7 1.0
CE2 B:TYR406 3.4 56.1 1.0
O06 B:65S604 3.4 70.0 1.0
C B:ARG403 3.6 27.2 1.0
N B:LEU405 3.6 30.4 1.0
N B:TYR406 3.7 37.3 1.0
CG B:TYR406 3.7 51.9 1.0
O B:HOH761 3.7 24.6 1.0
CB B:TYR406 4.1 46.2 1.0
N B:TYR404 4.1 27.9 1.0
O B:HOH703 4.2 57.0 1.0
CA B:TYR404 4.2 29.8 1.0
C B:TYR404 4.2 30.5 1.0
CA B:LEU405 4.4 31.7 1.0
CB B:LEU405 4.4 31.3 1.0
CA B:ARG403 4.4 25.4 1.0
CA B:TYR406 4.5 42.5 1.0
C B:LEU405 4.5 34.5 1.0
C B:ALA402 4.5 24.0 1.0
CZ B:TYR406 4.5 58.9 1.0
OE1 B:GLN266 4.8 47.0 1.0
CD1 B:TYR406 4.8 54.9 1.0
N B:ARG403 4.9 23.9 1.0
NH1 B:ARG259 5.0 41.4 1.0

Reference:

A.J.Latta, M.J.Mcleish, F.H.Andrews. Characterization of Acetolactate Synthase From Klebsiella Pneumoniae To Be Published.
Page generated: Thu Aug 1 08:55:23 2024

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