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Fluorine in PDB 5fck: Complement Factor D in Complex with Compound 5

Enzymatic activity of Complement Factor D in Complex with Compound 5

All present enzymatic activity of Complement Factor D in Complex with Compound 5:
3.4.21.46;

Protein crystallography data

The structure of Complement Factor D in Complex with Compound 5, PDB code: 5fck was solved by A.Mac Sweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.87 / 1.86
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.266, 48.742, 54.730, 90.00, 108.82, 90.00
R / Rfree (%) 18.7 / 23.7

Other elements in 5fck:

The structure of Complement Factor D in Complex with Compound 5 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Complement Factor D in Complex with Compound 5 (pdb code 5fck). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Complement Factor D in Complex with Compound 5, PDB code: 5fck:

Fluorine binding site 1 out of 1 in 5fck

Go back to Fluorine Binding Sites List in 5fck
Fluorine binding site 1 out of 1 in the Complement Factor D in Complex with Compound 5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Complement Factor D in Complex with Compound 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:13.3
occ:1.00
F A:5WC301 0.0 13.3 1.0
C27 A:5WC301 1.3 13.5 1.0
C28 A:5WC301 2.3 15.0 1.0
C11 A:5WC301 2.4 14.0 1.0
CL A:5WC301 2.8 17.7 1.0
C9 A:5WC301 2.8 12.8 1.0
N7 A:5WC301 2.9 13.2 1.0
C10 A:5WC301 3.1 12.9 1.0
CA A:GLY193 3.3 13.4 1.0
O A:LEU41 3.4 11.8 1.0
CD2 A:HIS40 3.5 14.3 1.0
O A:HIS40 3.5 11.4 1.0
C29 A:5WC301 3.6 13.7 1.0
C31 A:5WC301 3.6 13.9 1.0
C A:LEU41 4.0 12.6 1.0
C6 A:5WC301 4.0 13.6 1.0
C30 A:5WC301 4.1 15.1 1.0
N A:GLY193 4.1 12.8 1.0
CA A:LEU41 4.2 13.0 1.0
NE2 A:HIS40 4.2 13.3 1.0
C A:HIS40 4.2 11.9 1.0
CG A:HIS40 4.5 13.4 1.0
N A:LEU41 4.5 13.3 1.0
C A:GLY193 4.5 13.9 1.0
O A:GLY193 4.6 13.9 1.0
C5 A:5WC301 4.7 14.7 1.0
O8 A:5WC301 4.7 13.5 1.0
C A:LYS192 4.8 13.4 1.0
N A:CYS42 4.9 12.1 1.0
O A:LYS192 4.9 12.9 1.0
CB A:HIS40 5.0 13.3 1.0

Reference:

J.Maibaum, S.M.Liao, A.Vulpetti, N.Ostermann, S.Randl, S.Rudisser, E.Lorthiois, P.Erbel, B.Kinzel, F.A.Kolb, S.Barbieri, J.Wagner, C.Durand, K.Fettis, S.Dussauge, N.Hughes, O.Delgado, U.Hommel, T.Gould, A.Mac Sweeney, B.Gerhartz, F.Cumin, S.Flohr, A.Schubart, B.Jaffee, R.Harrison, A.M.Risitano, J.Eder, K.Anderson. Small-Molecule Factor D Inhibitors Targeting the Alternative Complement Pathway. Nat.Chem.Biol. V. 12 1105 2016.
ISSN: ESSN 1552-4469
PubMed: 27775713
DOI: 10.1038/NCHEMBIO.2208
Page generated: Sun Dec 13 12:22:16 2020

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