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Fluorine in PDB 5fhh: Structure of Human PIF1 Helicase Domain Residues 200-641

Enzymatic activity of Structure of Human PIF1 Helicase Domain Residues 200-641

All present enzymatic activity of Structure of Human PIF1 Helicase Domain Residues 200-641:
3.6.4.12;

Protein crystallography data

The structure of Structure of Human PIF1 Helicase Domain Residues 200-641, PDB code: 5fhh was solved by X.Zhou, W.Ren, S.R.Bharath, H.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.06 / 3.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 204.750, 204.750, 77.791, 90.00, 90.00, 120.00
R / Rfree (%) 31 / 35.5

Other elements in 5fhh:

The structure of Structure of Human PIF1 Helicase Domain Residues 200-641 also contains other interesting chemical elements:

Aluminium (Al) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Human PIF1 Helicase Domain Residues 200-641 (pdb code 5fhh). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Structure of Human PIF1 Helicase Domain Residues 200-641, PDB code: 5fhh:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 5fhh

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Fluorine binding site 1 out of 8 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:0.0
occ:1.00
 F1 A:ALF702 0.0 0.0 1.0
AL A:ALF702 1.8 0.7 1.0
NE2 A:GLN346 2.0 51.9 1.0
F3 A:ALF702 2.5 0.8 1.0
F4 A:ALF702 2.5 91.6 1.0
CE A:LYS234 3.2 38.7 1.0
CD A:GLN346 3.3 48.5 1.0
NZ A:LYS234 3.5 42.4 1.0
F2 A:ALF702 3.6 0.3 1.0
O2B A:ADP701 3.6 75.7 1.0
O1B A:ADP701 3.6 61.0 1.0
O3B A:ADP701 3.7 53.7 1.0
PB A:ADP701 3.7 62.1 1.0
CB A:ASP343 4.0 73.6 1.0
OE1 A:GLN346 4.0 52.6 1.0
N A:ASP343 4.3 0.0 1.0
CG A:GLN346 4.3 37.7 1.0
CD A:LYS234 4.7 32.0 1.0
O A:GLY228 4.7 86.5 1.0
CA A:ASP343 4.8 70.8 1.0
CA A:GLY342 4.8 97.5 1.0
C A:GLY342 4.8 0.4 1.0
CA A:ALA230 4.8 38.8 1.0
O A:SER229 4.8 61.5 1.0
NE2 A:GLN558 4.9 67.4 1.0

Fluorine binding site 2 out of 8 in 5fhh

Go back to Fluorine Binding Sites List in 5fhh
Fluorine binding site 2 out of 8 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:0.3
occ:1.00
 F2 A:ALF702 0.0 0.3 1.0
AL A:ALF702 1.8 0.7 1.0
O2B A:ADP701 2.3 75.7 1.0
F4 A:ALF702 2.5 91.6 1.0
F3 A:ALF702 2.5 0.8 1.0
O1B A:ADP701 2.6 61.0 1.0
N A:GLY559 2.9 76.8 1.0
PB A:ADP701 2.9 62.1 1.0
CA A:GLY559 2.9 86.7 1.0
F1 A:ALF702 3.6 0.0 1.0
O3A A:ADP701 3.8 57.1 1.0
C A:GLY559 4.0 92.4 1.0
C A:GLN558 4.2 72.8 1.0
O3B A:ADP701 4.2 53.7 1.0
OG A:SER235 4.2 22.7 1.0
NE2 A:GLN346 4.3 51.9 1.0
N A:MET560 4.4 86.6 1.0
NH2 A:ARG381 4.4 39.2 1.0
OE1 A:GLN346 4.7 52.6 1.0
CA A:GLN558 4.8 66.6 1.0
O A:GLY559 4.8 97.6 1.0
CB A:GLN558 4.9 65.7 1.0
NE2 A:GLN558 4.9 67.4 1.0
CD A:GLN346 5.0 48.5 1.0

Fluorine binding site 3 out of 8 in 5fhh

Go back to Fluorine Binding Sites List in 5fhh
Fluorine binding site 3 out of 8 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:0.8
occ:1.00
 F3 A:ALF702 0.0 0.8 1.0
AL A:ALF702 1.8 0.7 1.0
O1B A:ADP701 2.3 61.0 1.0
F1 A:ALF702 2.5 0.0 1.0
F2 A:ALF702 2.5 0.3 1.0
OG A:SER235 3.0 22.7 1.0
PB A:ADP701 3.4 62.1 1.0
F4 A:ALF702 3.6 91.6 1.0
O2B A:ADP701 3.7 75.7 1.0
OD1 A:ASP306 3.7 85.5 1.0
O3B A:ADP701 4.1 53.7 1.0
NE2 A:GLN346 4.2 51.9 1.0
CB A:SER235 4.3 32.6 1.0
CE A:LYS234 4.4 38.7 1.0
CG A:ASP306 4.6 79.2 1.0
OD2 A:ASP306 4.6 81.6 1.0
O3A A:ADP701 4.7 57.1 1.0
N A:SER235 4.7 30.5 1.0
CA A:GLY559 4.9 86.7 1.0
CB A:LYS234 4.9 23.6 1.0
N A:GLY559 4.9 76.8 1.0

Fluorine binding site 4 out of 8 in 5fhh

Go back to Fluorine Binding Sites List in 5fhh
Fluorine binding site 4 out of 8 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:91.6
occ:1.00
 F4 A:ALF702 0.0 91.6 1.0
AL A:ALF702 1.8 0.7 1.0
O2B A:ADP701 2.1 75.7 1.0
NE2 A:GLN346 2.4 51.9 1.0
F2 A:ALF702 2.5 0.3 1.0
F1 A:ALF702 2.5 0.0 1.0
OE1 A:GLN346 2.7 52.6 1.0
CD A:GLN346 2.9 48.5 1.0
PB A:ADP701 3.2 62.1 1.0
F3 A:ALF702 3.6 0.8 1.0
O3B A:ADP701 3.7 53.7 1.0
O1B A:ADP701 3.7 61.0 1.0
CA A:ALA230 4.1 38.8 1.0
CB A:ALA230 4.2 36.7 1.0
NH2 A:ARG381 4.2 39.2 1.0
CG A:GLN346 4.4 37.7 1.0
N A:GLY231 4.4 33.1 1.0
N A:GLY559 4.5 76.8 1.0
O3A A:ADP701 4.5 57.1 1.0
NE2 A:GLN558 4.7 67.4 1.0
C A:ALA230 4.8 30.4 1.0

Fluorine binding site 5 out of 8 in 5fhh

Go back to Fluorine Binding Sites List in 5fhh
Fluorine binding site 5 out of 8 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:0.3
occ:1.00
 F1 B:ALF702 0.0 0.3 1.0
AL B:ALF702 1.8 0.8 1.0
O3B B:ADP701 1.9 0.4 1.0
O1A B:ADP701 2.3 0.3 1.0
F3 B:ALF702 2.5 0.3 1.0
N B:GLY231 2.5 0.5 1.0
F4 B:ALF702 2.5 0.2 1.0
CA B:GLY231 3.0 0.5 1.0
C B:GLY231 3.0 0.3 1.0
O5' B:ADP701 3.0 0.7 1.0
PA B:ADP701 3.1 0.3 1.0
PB B:ADP701 3.1 0.3 1.0
O B:GLY231 3.2 0.2 1.0
OG B:SER235 3.4 0.9 1.0
O3A B:ADP701 3.5 0.4 1.0
O2B B:ADP701 3.6 0.2 1.0
F2 B:ALF702 3.6 0.4 1.0
O B:GLY233 3.6 0.6 1.0
C B:ALA230 3.6 0.3 1.0
N B:THR232 3.8 0.9 1.0
C5' B:ADP701 3.9 0.7 1.0
CA B:ALA230 4.0 0.7 1.0
O B:SER229 4.2 0.5 1.0
O4' B:ADP701 4.4 0.8 1.0
O1B B:ADP701 4.4 0.7 1.0
C B:GLY233 4.4 1.0 1.0
N B:GLY233 4.5 0.7 1.0
CB B:SER235 4.5 0.0 1.0
O2A B:ADP701 4.5 0.7 1.0
O B:ALA230 4.6 0.7 1.0
C4' B:ADP701 4.6 0.2 1.0
CA B:THR232 4.6 0.8 1.0
C B:THR232 4.7 0.3 1.0
N B:SER235 4.7 0.7 1.0
CB B:LYS234 4.8 0.0 1.0
CB B:ALA230 4.9 0.7 1.0
CA B:GLY233 5.0 0.4 1.0

Fluorine binding site 6 out of 8 in 5fhh

Go back to Fluorine Binding Sites List in 5fhh
Fluorine binding site 6 out of 8 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:0.4
occ:1.00
 F2 B:ALF702 0.0 0.4 1.0
OG B:SER235 1.3 0.9 1.0
AL B:ALF702 1.8 0.8 1.0
O B:GLY233 2.0 0.6 1.0
F4 B:ALF702 2.5 0.2 1.0
CB B:SER235 2.5 0.0 1.0
F3 B:ALF702 2.6 0.3 1.0
C8 B:ADP701 3.0 0.2 1.0
N B:SER235 3.0 0.7 1.0
C B:GLY233 3.0 1.0 1.0
C5' B:ADP701 3.1 0.7 1.0
CA B:SER235 3.1 0.1 1.0
N B:TYR236 3.1 1.0 1.0
C B:SER235 3.3 0.9 1.0
O4' B:ADP701 3.3 0.8 1.0
O1A B:ADP701 3.5 0.3 1.0
CA B:GLY233 3.5 0.4 1.0
F1 B:ALF702 3.6 0.3 1.0
O5' B:ADP701 3.7 0.7 1.0
O B:GLY231 3.7 0.2 1.0
C4' B:ADP701 3.7 0.2 1.0
N9 B:ADP701 3.8 0.9 1.0
N7 B:ADP701 3.9 0.1 1.0
N B:GLY233 4.1 0.7 1.0
C1' B:ADP701 4.1 0.2 1.0
PA B:ADP701 4.1 0.3 1.0
N B:LYS234 4.2 0.3 1.0
CA B:TYR236 4.2 0.3 1.0
C B:LYS234 4.2 0.9 1.0
CB B:TYR236 4.2 93.8 1.0
C3' B:ADP701 4.2 0.6 1.0
O B:SER235 4.3 0.6 1.0
C2' B:ADP701 4.5 0.6 1.0
O2A B:ADP701 4.6 0.7 1.0
C B:GLY231 4.6 0.3 1.0
CA B:LYS234 4.6 0.7 1.0
C4 B:ADP701 4.9 0.1 1.0
C5 B:ADP701 4.9 0.2 1.0
CB B:LYS234 5.0 0.0 1.0

Fluorine binding site 7 out of 8 in 5fhh

Go back to Fluorine Binding Sites List in 5fhh
Fluorine binding site 7 out of 8 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:0.3
occ:1.00
 F3 B:ALF702 0.0 0.3 1.0
AL B:ALF702 1.8 0.8 1.0
O1A B:ADP701 1.9 0.3 1.0
OG B:SER235 2.0 0.9 1.0
O B:GLY233 2.0 0.6 1.0
N B:SER235 2.3 0.7 1.0
F1 B:ALF702 2.5 0.3 1.0
F2 B:ALF702 2.6 0.4 1.0
CB B:SER235 2.6 0.0 1.0
CA B:SER235 2.9 0.1 1.0
C B:GLY233 3.1 1.0 1.0
CB B:LYS234 3.2 0.0 1.0
C B:LYS234 3.3 0.9 1.0
PA B:ADP701 3.3 0.3 1.0
CA B:LYS234 3.6 0.7 1.0
F4 B:ALF702 3.6 0.2 1.0
O3B B:ADP701 3.7 0.4 1.0
N B:LYS234 3.8 0.3 1.0
O5' B:ADP701 3.8 0.7 1.0
O2A B:ADP701 4.1 0.7 1.0
C B:SER235 4.1 0.9 1.0
C5' B:ADP701 4.1 0.7 1.0
O B:GLY231 4.3 0.2 1.0
N B:TYR236 4.3 1.0 1.0
CA B:GLY233 4.3 0.4 1.0
O3A B:ADP701 4.3 0.4 1.0
O B:LYS234 4.4 0.8 1.0
N B:GLY233 4.5 0.7 1.0
C B:GLY231 4.7 0.3 1.0
PB B:ADP701 4.7 0.3 1.0
C B:THR232 4.9 0.3 1.0
N B:GLY231 4.9 0.5 1.0

Fluorine binding site 8 out of 8 in 5fhh

Go back to Fluorine Binding Sites List in 5fhh
Fluorine binding site 8 out of 8 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:0.2
occ:1.00
 F4 B:ALF702 0.0 0.2 1.0
AL B:ALF702 1.8 0.8 1.0
O4' B:ADP701 2.1 0.8 1.0
O B:GLY231 2.1 0.2 1.0
F2 B:ALF702 2.5 0.4 1.0
F1 B:ALF702 2.5 0.3 1.0
C B:GLY231 2.8 0.3 1.0
C5' B:ADP701 2.9 0.7 1.0
C4' B:ADP701 2.9 0.2 1.0
CA B:GLY231 3.0 0.5 1.0
O5' B:ADP701 3.1 0.7 1.0
C8 B:ADP701 3.1 0.2 1.0
OG B:SER235 3.1 0.9 1.0
C1' B:ADP701 3.2 0.2 1.0
O B:GLY233 3.5 0.6 1.0
N9 B:ADP701 3.5 0.9 1.0
F3 B:ALF702 3.6 0.3 1.0
N B:GLY231 3.6 0.5 1.0
N B:GLY233 3.8 0.7 1.0
O1A B:ADP701 3.8 0.3 1.0
N B:THR232 4.0 0.9 1.0
PA B:ADP701 4.1 0.3 1.0
C3' B:ADP701 4.1 0.6 1.0
CA B:GLY233 4.1 0.4 1.0
C B:GLY233 4.2 1.0 1.0
O3B B:ADP701 4.2 0.4 1.0
C2' B:ADP701 4.3 0.6 1.0
N7 B:ADP701 4.4 0.1 1.0
CB B:ARG381 4.4 0.0 1.0
CB B:SER235 4.5 0.0 1.0
O2B B:ADP701 4.6 0.2 1.0
C B:THR232 4.6 0.3 1.0
OG1 B:THR561 4.8 99.9 1.0
C4 B:ADP701 4.8 0.1 1.0
CA B:THR232 4.9 0.8 1.0
PB B:ADP701 4.9 0.3 1.0
C B:ALA230 5.0 0.3 1.0

Reference:

X.Zhou, W.Ren, S.R.Bharath, X.Tang, Y.He, C.Chen, Z.Liu, D.Li, H.Song. Structural and Functional Insights Into the Unwinding Mechanism of Bacteroides Sp PIF1 Cell Rep V. 14 2030 2016.
ISSN: ESSN 2211-1247
PubMed: 26904952
DOI: 10.1016/J.CELREP.2016.02.008
Page generated: Thu Aug 1 09:23:11 2024

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