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Fluorine in PDB 5hpb: Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine

Enzymatic activity of Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine

All present enzymatic activity of Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine:
1.5.1.3;

Protein crystallography data

The structure of Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine, PDB code: 5hpb was solved by V.Cody, A.Ganjee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.09 / 1.65
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 85.845, 85.845, 76.725, 90.00, 90.00, 120.00
R / Rfree (%) 23.6 / 29.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine (pdb code 5hpb). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine, PDB code: 5hpb:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 5hpb

Go back to Fluorine Binding Sites List in 5hpb
Fluorine binding site 1 out of 3 in the Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:53.4
occ:1.00
FAE A:63W202 0.0 53.4 1.0
CAW A:63W202 1.5 51.2 1.0
FAF A:63W202 2.2 64.6 1.0
FAD A:63W202 2.3 61.6 1.0
CAS A:63W202 2.5 46.6 1.0
CAI A:63W202 2.9 45.0 1.0
O A:HOH347 2.9 33.3 1.0
O A:HOH342 3.2 38.1 1.0
CAJ A:63W202 3.8 41.2 1.0
CAG A:63W202 4.2 38.3 1.0
CD2 A:LEU67 4.2 27.1 1.0
CB A:ASN64 4.6 43.5 1.0
CD1 A:PHE31 4.8 35.4 1.0
CG A:ASN64 4.9 43.9 1.0
CAH A:63W202 4.9 37.6 1.0
CD2 A:PHE34 5.0 23.7 1.0

Fluorine binding site 2 out of 3 in 5hpb

Go back to Fluorine Binding Sites List in 5hpb
Fluorine binding site 2 out of 3 in the Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:64.6
occ:1.00
FAF A:63W202 0.0 64.6 1.0
CAW A:63W202 1.2 51.2 1.0
FAD A:63W202 2.0 61.6 1.0
FAE A:63W202 2.2 53.4 1.0
CAS A:63W202 2.2 46.6 1.0
CB A:ASN64 2.9 43.5 1.0
CAJ A:63W202 3.1 41.2 1.0
CAI A:63W202 3.1 45.0 1.0
CG2 A:ILE60 3.5 30.5 1.0
CG A:ASN64 3.5 43.9 1.0
CD2 A:LEU67 3.6 27.1 1.0
ND2 A:ASN64 3.7 44.3 1.0
O A:ASN64 4.1 40.2 1.0
CA A:ASN64 4.3 34.5 1.0
O A:HOH342 4.3 38.1 1.0
CAG A:63W202 4.3 38.3 1.0
CAH A:63W202 4.4 37.6 1.0
OD1 A:ASN64 4.4 48.4 1.0
O A:HOH347 4.4 33.3 1.0
C A:ASN64 4.5 37.2 1.0
CD A:PRO61 4.5 31.5 1.0
O A:HOH320 4.7 33.7 1.0
CB A:ILE60 4.8 26.6 1.0
CAP A:63W202 4.8 44.2 1.0

Fluorine binding site 3 out of 3 in 5hpb

Go back to Fluorine Binding Sites List in 5hpb
Fluorine binding site 3 out of 3 in the Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Human Dihydrofolate Reductase Complex with Nadph and 5-Methyl-6- (Phenylthio-4'Trifluoromethyl)Thieno[2,3-D]Pyrimidine-2,4-Diamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:61.6
occ:1.00
FAD A:63W202 0.0 61.6 1.0
CAW A:63W202 1.3 51.2 1.0
FAF A:63W202 2.0 64.6 1.0
CAS A:63W202 2.2 46.6 1.0
FAE A:63W202 2.3 53.4 1.0
CAJ A:63W202 2.7 41.2 1.0
ND2 A:ASN64 3.3 44.3 1.0
CAI A:63W202 3.5 45.0 1.0
CG A:ASN64 3.7 43.9 1.0
CB A:ASN64 3.9 43.5 1.0
CAH A:63W202 4.0 37.6 1.0
CD A:PRO61 4.4 31.5 1.0
OD1 A:ASN64 4.5 48.4 1.0
CAG A:63W202 4.6 38.3 1.0
CD1 A:PHE31 4.7 35.4 1.0
CAP A:63W202 4.8 44.2 1.0
CE1 A:PHE31 4.8 37.5 1.0
CG2 A:ILE60 5.0 30.5 1.0

Reference:

V.Cody, A.Gangjee. Human Dihydrofolate Reductase Ternary Complex with A Series Offluorine Substituted 5-Methyl-6-Phenythio)Thieno[2,3-D]Pyrimidine-2,4-Diamines To Be Published.
Page generated: Sun Dec 13 12:23:50 2020

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