Atomistry » Fluorine » PDB 5hu1-5iev » 5i0h
Atomistry »
  Fluorine »
    PDB 5hu1-5iev »
      5i0h »

Fluorine in PDB 5i0h: Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State

Protein crystallography data

The structure of Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State, PDB code: 5i0h was solved by T.Isabet, F.Blanc, H.L.Sweeney, A.Houdusse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.35 / 1.80
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 76.480, 78.300, 78.670, 75.69, 86.38, 76.12
R / Rfree (%) 16.5 / 19

Other elements in 5i0h:

The structure of Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State (pdb code 5i0h). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State, PDB code: 5i0h:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 5i0h

Go back to Fluorine Binding Sites List in 5i0h
Fluorine binding site 1 out of 6 in the Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:20.7
occ:1.00
 F1 A:BEF803 0.0 20.7 1.0
BE A:BEF803 1.6 21.2 1.0
F2 A:BEF803 2.5 20.2 1.0
F3 A:BEF803 2.6 18.4 1.0
O3B A:ADP801 2.6 17.9 1.0
N A:GLY437 2.8 20.2 1.0
NZ A:LYS163 2.8 19.3 1.0
O A:HOH1006 2.9 24.7 1.0
CA A:GLY437 3.2 19.3 1.0
CA A:SER159 3.3 16.3 1.0
CE A:LYS163 3.4 18.2 1.0
PB A:ADP801 3.6 18.9 1.0
CB A:SER159 3.8 17.6 1.0
C A:PHE436 3.9 21.7 1.0
O1B A:ADP801 3.9 17.7 1.0
O A:HOH909 4.0 16.9 1.0
OG A:SER159 4.0 18.5 1.0
O2B A:ADP801 4.0 17.7 1.0
N A:SER159 4.0 17.2 1.0
N A:GLY160 4.1 19.6 1.0
MG A:MG802 4.1 20.4 1.0
O A:HOH921 4.1 25.4 1.0
O A:GLU158 4.2 17.8 1.0
CA A:PHE436 4.2 18.0 1.0
C A:SER159 4.2 20.3 1.0
C A:GLY437 4.2 21.6 1.0
O A:ILE435 4.4 21.3 1.0
C A:GLU158 4.4 18.2 1.0
O A:GLY437 4.5 20.5 1.0
CD A:LYS163 4.9 19.1 1.0
O A:GLY157 4.9 19.3 1.0
O A:PHE436 4.9 20.7 1.0
OG A:SER218 4.9 20.2 1.0
N A:SER219 5.0 17.2 1.0
O3A A:ADP801 5.0 18.5 1.0

Fluorine binding site 2 out of 6 in 5i0h

Go back to Fluorine Binding Sites List in 5i0h
Fluorine binding site 2 out of 6 in the Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:20.2
occ:1.00
 F2 A:BEF803 0.0 20.2 1.0
BE A:BEF803 1.6 21.2 1.0
MG A:MG802 2.0 20.4 1.0
F1 A:BEF803 2.5 20.7 1.0
F3 A:BEF803 2.5 18.4 1.0
O3B A:ADP801 2.6 17.9 1.0
OG A:SER219 2.9 18.7 1.0
N A:SER219 2.9 17.2 1.0
O A:HOH909 2.9 16.9 1.0
O A:HOH1073 3.0 16.8 1.0
O2B A:ADP801 3.0 17.7 1.0
O A:HOH1006 3.1 24.7 1.0
CB A:SER219 3.2 18.0 1.0
PB A:ADP801 3.3 18.9 1.0
CA A:SER219 3.6 16.0 1.0
C A:SER218 3.9 20.6 1.0
ND2 A:ASN215 4.0 17.2 1.0
CA A:SER218 4.0 16.3 1.0
OG1 A:THR164 4.1 16.5 1.0
O A:SER219 4.3 19.5 1.0
OG A:SER218 4.3 20.2 1.0
O1B A:ADP801 4.4 17.7 1.0
O3A A:ADP801 4.5 18.5 1.0
C A:SER219 4.5 18.6 1.0
O A:ASN217 4.5 19.2 1.0
NZ A:LYS163 4.6 19.3 1.0
N A:GLY437 4.6 20.2 1.0
O A:ILE435 4.7 21.3 1.0
CE A:LYS163 4.7 18.2 1.0
CA A:PHE436 4.7 18.0 1.0
CB A:SER218 4.8 18.0 1.0
O2A A:ADP801 4.8 17.5 1.0

Fluorine binding site 3 out of 6 in 5i0h

Go back to Fluorine Binding Sites List in 5i0h
Fluorine binding site 3 out of 6 in the Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:18.4
occ:1.00
 F3 A:BEF803 0.0 18.4 1.0
BE A:BEF803 1.6 21.2 1.0
F2 A:BEF803 2.5 20.2 1.0
F1 A:BEF803 2.6 20.7 1.0
O3B A:ADP801 2.6 17.9 1.0
OG A:SER159 2.6 18.5 1.0
O A:HOH1006 2.8 24.7 1.0
OG A:SER218 3.0 20.2 1.0
ND2 A:ASN215 3.2 17.2 1.0
CA A:SER218 3.4 16.3 1.0
CB A:SER218 3.4 18.0 1.0
CB A:SER159 3.4 17.6 1.0
CA A:SER159 3.6 16.3 1.0
N A:GLY160 3.7 19.6 1.0
CB A:ASN215 3.7 17.2 1.0
N A:SER219 3.8 17.2 1.0
CG A:ASN215 3.9 22.3 1.0
C A:SER159 4.0 20.3 1.0
PB A:ADP801 4.0 18.9 1.0
C A:SER218 4.1 20.6 1.0
O A:HOH921 4.3 25.4 1.0
MG A:MG802 4.4 20.4 1.0
N A:SER218 4.5 17.5 1.0
O A:HOH1073 4.5 16.8 1.0
O2B A:ADP801 4.6 17.7 1.0
O A:HOH1004 4.6 24.7 1.0
CA A:GLY160 4.7 19.8 1.0
O3A A:ADP801 4.8 18.5 1.0
N A:GLY437 4.8 20.2 1.0
N A:SER159 4.9 17.2 1.0
O A:ASN217 4.9 19.2 1.0
O A:SER219 5.0 19.5 1.0
CA A:SER219 5.0 16.0 1.0
O1B A:ADP801 5.0 17.7 1.0

Fluorine binding site 4 out of 6 in 5i0h

Go back to Fluorine Binding Sites List in 5i0h
Fluorine binding site 4 out of 6 in the Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F803

b:22.0
occ:1.00
 F1 B:BEF803 0.0 22.0 1.0
BE B:BEF803 1.5 22.3 1.0
F2 B:BEF803 2.5 19.9 1.0
F3 B:BEF803 2.6 22.3 1.0
O1B B:ADP801 2.6 22.7 1.0
N B:GLY437 2.7 20.4 1.0
NZ B:LYS163 2.8 23.0 1.0
O B:HOH1002 2.9 24.6 1.0
CA B:GLY437 3.2 20.9 1.0
CA B:SER159 3.3 19.0 1.0
CE B:LYS163 3.4 19.2 1.0
PB B:ADP801 3.6 20.6 1.0
C B:PHE436 3.9 23.7 1.0
CB B:SER159 3.9 22.7 1.0
O2B B:ADP801 3.9 20.0 1.0
O B:HOH910 3.9 19.2 1.0
O3B B:ADP801 4.0 19.1 1.0
OG B:SER159 4.0 21.6 1.0
N B:SER159 4.0 20.1 1.0
MG B:MG802 4.0 22.0 1.0
N B:GLY160 4.1 21.3 1.0
O B:HOH914 4.2 30.4 1.0
CA B:PHE436 4.2 19.4 1.0
O B:GLU158 4.2 22.6 1.0
C B:GLY437 4.3 23.5 1.0
C B:SER159 4.3 23.3 1.0
O B:ILE435 4.3 20.3 0.5
O B:ILE435 4.4 23.4 0.5
C B:GLU158 4.4 23.7 1.0
O B:GLY437 4.5 23.3 1.0
CD B:LYS163 4.9 19.0 1.0
OG B:SER218 4.9 23.4 1.0
O B:PHE436 4.9 22.0 1.0
N B:SER219 5.0 19.0 1.0
O B:GLY157 5.0 22.6 1.0
O3A B:ADP801 5.0 20.0 1.0

Fluorine binding site 5 out of 6 in 5i0h

Go back to Fluorine Binding Sites List in 5i0h
Fluorine binding site 5 out of 6 in the Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F803

b:19.9
occ:1.00
 F2 B:BEF803 0.0 19.9 1.0
BE B:BEF803 1.5 22.3 1.0
MG B:MG802 2.0 22.0 1.0
F1 B:BEF803 2.5 22.0 1.0
F3 B:BEF803 2.5 22.3 1.0
O1B B:ADP801 2.6 22.7 1.0
OG B:SER219 2.9 21.2 1.0
N B:SER219 2.9 19.0 1.0
O B:HOH910 2.9 19.2 1.0
O3B B:ADP801 3.0 19.1 1.0
O B:HOH963 3.0 19.5 1.0
O B:HOH1002 3.1 24.6 1.0
CB B:SER219 3.2 20.1 1.0
PB B:ADP801 3.4 20.6 1.0
CA B:SER219 3.6 18.1 1.0
C B:SER218 3.9 21.8 1.0
ND2 B:ASN215 4.0 18.8 1.0
CA B:SER218 4.0 18.6 1.0
OG1 B:THR164 4.1 19.5 1.0
OG B:SER218 4.3 23.4 1.0
O B:SER219 4.3 20.7 1.0
O2B B:ADP801 4.4 20.0 1.0
C B:SER219 4.5 21.2 1.0
O3A B:ADP801 4.5 20.0 1.0
N B:GLY437 4.5 20.4 1.0
O B:ASN217 4.6 22.3 1.0
NZ B:LYS163 4.6 23.0 1.0
O B:ILE435 4.7 23.4 0.5
CB B:SER218 4.7 21.7 1.0
CE B:LYS163 4.7 19.2 1.0
O B:ILE435 4.7 20.3 0.5
CA B:PHE436 4.7 19.4 1.0
O1A B:ADP801 4.8 19.7 1.0

Fluorine binding site 6 out of 6 in 5i0h

Go back to Fluorine Binding Sites List in 5i0h
Fluorine binding site 6 out of 6 in the Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Myosin X Motor Domain in Pre-Powerstroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F803

b:22.3
occ:1.00
 F3 B:BEF803 0.0 22.3 1.0
BE B:BEF803 1.6 22.3 1.0
F2 B:BEF803 2.5 19.9 1.0
F1 B:BEF803 2.6 22.0 1.0
O1B B:ADP801 2.6 22.7 1.0
OG B:SER159 2.6 21.6 1.0
O B:HOH1002 3.0 24.6 1.0
OG B:SER218 3.0 23.4 1.0
ND2 B:ASN215 3.2 18.8 1.0
CA B:SER218 3.4 18.6 1.0
CB B:SER218 3.4 21.7 1.0
CB B:SER159 3.4 22.7 1.0
CA B:SER159 3.5 19.0 1.0
N B:GLY160 3.6 21.3 1.0
CB B:ASN215 3.7 22.7 1.0
N B:SER219 3.8 19.0 1.0
CG B:ASN215 3.9 25.3 1.0
C B:SER159 4.0 23.3 1.0
PB B:ADP801 4.0 20.6 1.0
C B:SER218 4.1 21.8 1.0
MG B:MG802 4.4 22.0 1.0
O B:HOH914 4.4 30.4 1.0
N B:SER218 4.5 20.4 1.0
O B:HOH963 4.5 19.5 1.0
O3B B:ADP801 4.6 19.1 1.0
O B:HOH925 4.6 23.4 1.0
CA B:GLY160 4.7 21.4 1.0
O3A B:ADP801 4.8 20.0 1.0
N B:GLY437 4.8 20.4 1.0
N B:SER159 4.9 20.1 1.0
O B:ASN217 4.9 22.3 1.0
O2B B:ADP801 5.0 20.0 1.0

Reference:

V.Ropars, Z.Yang, T.Isabet, F.Blanc, K.Zhou, T.Lin, X.Liu, P.Hissier, F.Samazan, B.Amigues, E.D.Yang, H.Park, O.Pylypenko, M.Cecchini, C.V.Sindelar, H.L.Sweeney, A.Houdusse. The Myosin X Motor Is Optimized For Movement on Actin Bundles. Nat Commun V. 7 12456 2016.
ISSN: ESSN 2041-1723
PubMed: 27580874
DOI: 10.1038/NCOMMS12456
Page generated: Thu Aug 1 10:03:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy