Atomistry » Fluorine » PDB 5j8m-5jw1 » 5jal
Atomistry »
  Fluorine »
    PDB 5j8m-5jw1 »
      5jal »

Fluorine in PDB 5jal: Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-Pla2) Discovered Through X-Ray Fragment Screening

Enzymatic activity of Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-Pla2) Discovered Through X-Ray Fragment Screening

All present enzymatic activity of Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-Pla2) Discovered Through X-Ray Fragment Screening:
3.1.1.47;

Protein crystallography data

The structure of Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-Pla2) Discovered Through X-Ray Fragment Screening, PDB code: 5jal was solved by P.J.Day, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.90 / 2.06
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.663, 91.329, 51.422, 90.00, 111.79, 90.00
R / Rfree (%) 15.5 / 19.6

Other elements in 5jal:

The structure of Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-Pla2) Discovered Through X-Ray Fragment Screening also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-Pla2) Discovered Through X-Ray Fragment Screening (pdb code 5jal). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-Pla2) Discovered Through X-Ray Fragment Screening, PDB code: 5jal:

Fluorine binding site 1 out of 1 in 5jal

Go back to Fluorine Binding Sites List in 5jal
Fluorine binding site 1 out of 1 in the Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-Pla2) Discovered Through X-Ray Fragment Screening


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-Pla2) Discovered Through X-Ray Fragment Screening within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F505

b:39.2
occ:0.76
 F1 A:6HO505 0.0 39.2 0.8
C2 A:6HO505 1.4 35.5 0.8
C7 A:6HO505 2.3 33.4 0.8
C3 A:6HO505 2.3 32.2 0.8
H18 A:6HO505 2.5 33.1 0.8
H15 A:6HO505 2.5 31.8 0.8
CD2 A:LEU369 3.5 40.0 1.0
C4 A:6HO505 3.6 30.5 0.8
C6 A:6HO505 3.6 30.3 0.8
CD2 A:LEU111 4.1 37.1 1.0
CB A:LEU369 4.1 32.7 1.0
C5 A:6HO505 4.1 28.4 0.8
CG A:LEU369 4.2 37.5 1.0
O A:LEU369 4.3 30.3 1.0
H16 A:6HO505 4.4 29.9 0.8
CD1 A:LEU369 4.6 36.4 1.0
O A:HOH774 4.6 29.0 1.0
CD1 A:LEU111 4.8 36.9 1.0
CD2 A:LEU371 4.8 21.9 1.0
C8 A:6HO505 4.8 31.3 0.8
CA A:LEU369 4.9 32.6 1.0

Reference:

A.J.Woolford, J.E.Pero, S.Aravapalli, V.Berdini, J.E.Coyle, P.J.Day, A.M.Dodson, P.Grondin, F.P.Holding, L.Y.Lee, P.Li, E.S.Manas, J.Marino, A.C.Martin, B.W.Mccleland, R.L.Mcmenamin, C.W.Murray, C.E.Neipp, L.W.Page, V.K.Patel, F.Potvain, S.Rich, R.A.Rivero, K.Smith, D.O.Somers, L.Trottet, R.Velagaleti, G.Williams, R.Xie. Exploitation of A Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA2) Discovered Through X-Ray Fragment Screening. J.Med.Chem. V. 59 5356 2016.
ISSN: ISSN 0022-2623
PubMed: 27167608
DOI: 10.1021/ACS.JMEDCHEM.6B00212
Page generated: Thu Aug 1 10:30:36 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy