Fluorine in PDB 5kbs: Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution (pdb code 5kbs). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution, PDB code: 5kbs:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:0.9 occ:1.00 FAF A:ZK11101 0.0 0.9 1.0 CAZ A:ZK11101 1.4 0.9 1.0 FAG A:ZK11101 2.2 0.9 1.0 FAH A:ZK11101 2.2 0.9 1.0 CAS A:ZK11101 2.4 0.9 1.0 OH A:TYR732 3.1 0.2 1.0 OG1 A:THR707 3.1 0.5 1.0 CAM A:ZK11101 3.2 0.9 1.0 CAR A:ZK11101 3.2 0.9 1.0 CAJ A:ZK11101 3.3 0.9 1.0 NAX A:ZK11101 3.3 0.9 1.0 CB A:GLU705 4.0 0.5 1.0 CB A:MET708 4.1 0.9 1.0 CAK A:ZK11101 4.3 0.9 1.0 CZ A:TYR732 4.3 0.5 1.0 N A:MET708 4.3 0.1 1.0 CB A:THR707 4.4 0.3 1.0 CAI A:ZK11101 4.4 0.9 1.0 CAN A:ZK11101 4.5 0.9 1.0 CAV A:ZK11101 4.5 0.9 1.0 CA A:MET708 4.7 0.2 1.0 OH A:TYR405 4.8 0.4 1.0 CE2 A:TYR405 4.8 0.4 1.0 CE2 A:TYR732 5.0 0.1 1.0 CAW A:ZK11101 5.0 0.9 1.0 CG A:MET708 5.0 0.4 1.0

Fluorine binding site 2 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:0.9 occ:1.00 FAG A:ZK11101 0.0 0.9 1.0 CAZ A:ZK11101 1.4 0.9 1.0 FAH A:ZK11101 2.2 0.9 1.0 FAF A:ZK11101 2.2 0.9 1.0 CAS A:ZK11101 2.4 0.9 1.0 CAJ A:ZK11101 2.7 0.9 1.0 CB A:PRO478 3.5 0.0 1.0 CE2 A:TYR405 3.6 0.4 1.0 OH A:TYR732 3.6 0.2 1.0 CAR A:ZK11101 3.6 0.9 1.0 OH A:TYR450 3.8 0.8 1.0 CG A:PRO478 3.8 0.8 1.0 CG A:GLU402 3.9 0.5 1.0 CAV A:ZK11101 4.1 0.9 1.0 CD2 A:TYR405 4.1 0.6 1.0 CZ A:TYR405 4.2 0.3 1.0 NAX A:ZK11101 4.2 0.9 1.0 CZ A:TYR732 4.2 0.5 1.0 OH A:TYR405 4.3 0.4 1.0 OG1 A:THR707 4.4 0.5 1.0 CE2 A:TYR732 4.7 0.1 1.0 CD A:GLU402 4.7 0.5 1.0 CAM A:ZK11101 4.7 0.9 1.0 CZ A:TYR450 4.7 0.7 1.0 CAI A:ZK11101 4.8 0.9 1.0 O A:PRO478 4.8 0.6 1.0 CB A:GLU402 4.9 0.9 1.0 CE1 A:TYR732 4.9 0.5 1.0 OE1 A:GLU402 5.0 0.4 1.0 CAW A:ZK11101 5.0 0.9 1.0 NAP A:ZK11101 5.0 0.9 1.0 CAN A:ZK11101 5.0 0.9 1.0 CA A:PRO478 5.0 0.0 1.0

Fluorine binding site 3 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:0.9 occ:1.00 FAH A:ZK11101 0.0 0.9 1.0 CAZ A:ZK11101 1.4 0.9 1.0 FAG A:ZK11101 2.2 0.9 1.0 FAF A:ZK11101 2.2 0.9 1.0 CAS A:ZK11101 2.4 0.9 1.0 NAX A:ZK11101 2.6 0.9 1.0 CAR A:ZK11101 2.8 0.9 1.0 CAN A:ZK11101 3.1 0.9 1.0 CAM A:ZK11101 3.2 0.9 1.0 OE1 A:GLU402 3.3 0.4 1.0 CG A:GLU402 3.4 0.5 1.0 CD A:GLU402 3.6 0.5 1.0 CAJ A:ZK11101 3.6 0.9 1.0 OH A:TYR450 3.9 0.8 1.0 CAK A:ZK11101 3.9 0.9 1.0 CAL A:ZK11101 4.0 0.9 1.0 CAI A:ZK11101 4.2 0.9 1.0 SD A:MET708 4.3 0.6 1.0 CB A:MET708 4.3 0.9 1.0 OE2 A:GLU402 4.5 0.8 1.0 OAQ A:ZK11101 4.6 0.9 1.0 CG A:MET708 4.6 0.4 1.0 CAV A:ZK11101 4.8 0.9 1.0 CB A:GLU402 4.8 0.9 1.0 CE2 A:TYR405 4.9 0.4 1.0

Fluorine binding site 4 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:F1101 b:0.1 occ:1.00 FAF B:ZK11101 0.0 0.1 1.0 CAZ B:ZK11101 1.4 0.1 1.0 FAG B:ZK11101 2.2 0.1 1.0 FAH B:ZK11101 2.2 0.1 1.0 CAS B:ZK11101 2.4 0.1 1.0 OG1 B:THR707 3.1 0.5 1.0 OH B:TYR732 3.1 0.7 1.0 CAM B:ZK11101 3.2 0.1 1.0 CAR B:ZK11101 3.2 0.1 1.0 CAJ B:ZK11101 3.3 0.1 1.0 NAX B:ZK11101 3.3 0.1 1.0 CB B:MET708 4.0 0.9 1.0 CB B:GLU705 4.1 0.6 1.0 CAK B:ZK11101 4.3 0.1 1.0 N B:MET708 4.3 0.1 1.0 CZ B:TYR732 4.3 0.2 1.0 CB B:THR707 4.4 0.9 1.0 CAI B:ZK11101 4.4 0.1 1.0 CAN B:ZK11101 4.5 0.1 1.0 CAV B:ZK11101 4.5 0.1 1.0 CA B:MET708 4.7 0.9 1.0 OH B:TYR405 4.8 0.5 1.0 CE2 B:TYR405 4.8 0.1 1.0 CG B:MET708 5.0 1.0 1.0 CE2 B:TYR732 5.0 0.4 1.0 CAW B:ZK11101 5.0 0.1 1.0

Fluorine binding site 5 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:F1101 b:0.1 occ:1.00 FAG B:ZK11101 0.0 0.1 1.0 CAZ B:ZK11101 1.4 0.1 1.0 FAH B:ZK11101 2.2 0.1 1.0 FAF B:ZK11101 2.2 0.1 1.0 CAS B:ZK11101 2.4 0.1 1.0 CAJ B:ZK11101 2.7 0.1 1.0 CB B:PRO478 3.4 0.0 1.0 CE2 B:TYR405 3.5 0.1 1.0 OH B:TYR732 3.6 0.7 1.0 CAR B:ZK11101 3.6 0.1 1.0 CG B:PRO478 3.8 0.7 1.0 OH B:TYR450 3.9 0.1 1.0 CG B:GLU402 4.0 0.4 1.0 CZ B:TYR405 4.1 0.7 1.0 CD2 B:TYR405 4.1 0.6 1.0 CAV B:ZK11101 4.1 0.1 1.0 CZ B:TYR732 4.2 0.2 1.0 OH B:TYR405 4.2 0.5 1.0 NAX B:ZK11101 4.2 0.1 1.0 OG1 B:THR707 4.4 0.5 1.0 CE2 B:TYR732 4.6 0.4 1.0 CAM B:ZK11101 4.7 0.1 1.0 O B:PRO478 4.8 1.0 1.0 CAI B:ZK11101 4.8 0.1 1.0 CE1 B:TYR732 4.8 0.9 1.0 CZ B:TYR450 4.8 0.8 1.0 CD B:GLU402 4.8 0.6 1.0 CB B:GLU402 4.9 0.1 1.0 CA B:PRO478 4.9 0.8 1.0 CAW B:ZK11101 5.0 0.1 1.0 NAP B:ZK11101 5.0 0.1 1.0 CAN B:ZK11101 5.0 0.1 1.0

Fluorine binding site 6 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:F1101 b:0.1 occ:1.00 FAH B:ZK11101 0.0 0.1 1.0 CAZ B:ZK11101 1.4 0.1 1.0 FAG B:ZK11101 2.2 0.1 1.0 FAF B:ZK11101 2.2 0.1 1.0 CAS B:ZK11101 2.4 0.1 1.0 NAX B:ZK11101 2.6 0.1 1.0 CAR B:ZK11101 2.8 0.1 1.0 CAN B:ZK11101 3.1 0.1 1.0 CAM B:ZK11101 3.2 0.1 1.0 OE1 B:GLU402 3.3 0.7 1.0 CG B:GLU402 3.3 0.4 1.0 CD B:GLU402 3.6 0.6 1.0 CAJ B:ZK11101 3.6 0.1 1.0 OH B:TYR450 3.9 0.1 1.0 CAK B:ZK11101 3.9 0.1 1.0 CAL B:ZK11101 4.0 0.1 1.0 CAI B:ZK11101 4.2 0.1 1.0 SD B:MET708 4.3 0.6 1.0 CB B:MET708 4.4 0.9 1.0 OE2 B:GLU402 4.5 0.4 1.0 OAQ B:ZK11101 4.6 0.1 1.0 CG B:MET708 4.6 1.0 1.0 CB B:GLU402 4.7 0.1 1.0 CAV B:ZK11101 4.8 0.1 1.0 CE2 B:TYR405 4.8 0.1 1.0

Fluorine binding site 7 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:F1101 b:0.6 occ:1.00 FAF C:ZK11101 0.0 0.6 1.0 CAZ C:ZK11101 1.4 0.6 1.0 FAG C:ZK11101 2.2 0.6 1.0 FAH C:ZK11101 2.2 0.6 1.0 CAS C:ZK11101 2.4 0.6 1.0 CAM C:ZK11101 3.1 0.6 1.0 CAR C:ZK11101 3.2 0.6 1.0 OH C:TYR732 3.2 0.9 1.0 OG1 C:THR707 3.2 0.4 1.0 CAJ C:ZK11101 3.3 0.6 1.0 NAX C:ZK11101 3.3 0.6 1.0 CB C:MET708 4.1 0.4 1.0 CB C:GLU705 4.1 0.0 1.0 CAK C:ZK11101 4.3 0.6 1.0 CZ C:TYR732 4.3 0.1 1.0 N C:MET708 4.3 0.3 1.0 CAI C:ZK11101 4.4 0.6 1.0 CB C:THR707 4.5 0.4 1.0 CAN C:ZK11101 4.5 0.6 1.0 CAV C:ZK11101 4.5 0.6 1.0 CA C:MET708 4.7 1.0 1.0 CE2 C:TYR405 4.8 0.6 1.0 OH C:TYR405 4.8 0.1 1.0 CG C:MET708 5.0 0.2 1.0 CAW C:ZK11101 5.0 0.6 1.0

Fluorine binding site 8 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:F1101 b:0.6 occ:1.00 FAG C:ZK11101 0.0 0.6 1.0 CAZ C:ZK11101 1.4 0.6 1.0 FAH C:ZK11101 2.2 0.6 1.0 FAF C:ZK11101 2.2 0.6 1.0 CAS C:ZK11101 2.4 0.6 1.0 CAJ C:ZK11101 2.7 0.6 1.0 CB C:PRO478 3.5 0.4 1.0 CE2 C:TYR405 3.6 0.6 1.0 CAR C:ZK11101 3.6 0.6 1.0 OH C:TYR732 3.7 0.9 1.0 OH C:TYR450 3.8 0.0 1.0 CG C:PRO478 3.8 0.1 1.0 CG C:GLU402 3.9 0.0 1.0 CAV C:ZK11101 4.1 0.6 1.0 CD2 C:TYR405 4.1 0.5 1.0 CZ C:TYR405 4.2 0.7 1.0 NAX C:ZK11101 4.2 0.6 1.0 CZ C:TYR732 4.3 0.1 1.0 OH C:TYR405 4.3 0.1 1.0 OG1 C:THR707 4.5 0.4 1.0 CD C:GLU402 4.7 0.1 1.0 CZ C:TYR450 4.7 0.8 1.0 CAM C:ZK11101 4.7 0.6 1.0 CE2 C:TYR732 4.8 0.9 1.0 O C:PRO478 4.8 0.2 1.0 CAI C:ZK11101 4.8 0.6 1.0 CB C:GLU402 4.8 1.0 1.0 CE1 C:TYR732 4.9 0.9 1.0 OE1 C:GLU402 4.9 0.4 1.0 CA C:PRO478 5.0 0.4 1.0 CAW C:ZK11101 5.0 0.6 1.0 NAP C:ZK11101 5.0 0.6 1.0 CAN C:ZK11101 5.0 0.6 1.0

Fluorine binding site 9 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:F1101 b:0.6 occ:1.00 FAH C:ZK11101 0.0 0.6 1.0 CAZ C:ZK11101 1.4 0.6 1.0 FAG C:ZK11101 2.2 0.6 1.0 FAF C:ZK11101 2.2 0.6 1.0 CAS C:ZK11101 2.4 0.6 1.0 NAX C:ZK11101 2.6 0.6 1.0 CAR C:ZK11101 2.8 0.6 1.0 CAN C:ZK11101 3.1 0.6 1.0 CAM C:ZK11101 3.2 0.6 1.0 OE1 C:GLU402 3.3 0.4 1.0 CG C:GLU402 3.4 0.0 1.0 CD C:GLU402 3.5 0.1 1.0 CAJ C:ZK11101 3.6 0.6 1.0 OH C:TYR450 3.9 0.0 1.0 CAK C:ZK11101 3.9 0.6 1.0 CAL C:ZK11101 4.0 0.6 1.0 CAI C:ZK11101 4.2 0.6 1.0 SD C:MET708 4.3 0.5 1.0 CB C:MET708 4.4 0.4 1.0 OE2 C:GLU402 4.5 0.6 1.0 OAQ C:ZK11101 4.5 0.6 1.0 CG C:MET708 4.6 0.2 1.0 CAV C:ZK11101 4.8 0.6 1.0 CB C:GLU402 4.8 1.0 1.0 CE2 C:TYR405 4.9 0.6 1.0 CZ C:TYR450 5.0 0.8 1.0

Fluorine binding site 10 out of 12 in the Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Cryo-Em Structure of GLUA2-0XSTZ at 8.7 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:F1101 b:0.1 occ:1.00 FAF D:ZK11101 0.0 0.1 1.0 CAZ D:ZK11101 1.4 0.1 1.0 FAG D:ZK11101 2.2 0.1 1.0 FAH D:ZK11101 2.2 0.1 1.0 CAS D:ZK11101 2.4 0.1 1.0 OH D:TYR732 3.0 0.4 1.0 CAM D:ZK11101 3.1 0.1 1.0 CAR D:ZK11101 3.2 0.1 1.0 OG1 D:THR707 3.2 0.6 1.0 CAJ D:ZK11101 3.3 0.1 1.0 NAX D:ZK11101 3.3 0.1 1.0 CZ D:TYR732 4.2 0.8 1.0 CB D:GLU705 4.2 0.8 1.0 CB D:MET708 4.3 0.0 1.0 CAK D:ZK11101 4.3 0.1 1.0 CB D:THR707 4.4 0.8 1.0 CAI D:ZK11101 4.4 0.1 1.0 N D:MET708 4.5 0.5 1.0 CAN D:ZK11101 4.5 0.1 1.0 CAV D:ZK11101 4.5 0.1 1.0 CE2 D:TYR405 4.7 0.4 1.0 OH D:TYR405 4.8 0.1 1.0 CE2 D:TYR732 4.8 0.8 1.0 CA D:MET708 4.9 0.9 1.0 CE1 D:TYR732 5.0 0.5 1.0 CAW D:ZK11101 5.0 0.1 1.0

E.C.Twomey, M.V.Yelshanskaya, R.A.Grassucci, J.Frank, A.I.Sobolevsky. Elucidation of Ampa Receptor-Stargazin Complexes By Cryo-Electron Microscopy. Science V. 353 83 2016.
ISSN: ESSN 1095-9203
PubMed: 27365450
DOI: 10.1126/SCIENCE.AAF8411