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Fluorine in PDB 5kbt: Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution

Fluorine Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution (pdb code 5kbt). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution, PDB code: 5kbt:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in 5kbt

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Fluorine binding site 1 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1301

b:0.9
occ:1.00
FAF A:ZK11301 0.0 0.9 1.0
CAZ A:ZK11301 1.4 0.9 1.0
FAG A:ZK11301 2.2 0.9 1.0
FAH A:ZK11301 2.2 0.9 1.0
CAS A:ZK11301 2.4 0.9 1.0
OH A:TYR732 3.1 0.2 1.0
OG1 A:THR707 3.1 0.5 1.0
CAM A:ZK11301 3.2 0.9 1.0
CAR A:ZK11301 3.2 0.9 1.0
CAJ A:ZK11301 3.3 0.9 1.0
NAX A:ZK11301 3.3 0.9 1.0
CB A:GLU705 4.0 0.5 1.0
CB A:MET708 4.1 0.9 1.0
CAK A:ZK11301 4.3 0.9 1.0
CZ A:TYR732 4.3 0.5 1.0
N A:MET708 4.3 0.1 1.0
CB A:THR707 4.4 0.3 1.0
CAI A:ZK11301 4.4 0.9 1.0
CAN A:ZK11301 4.5 0.9 1.0
CAV A:ZK11301 4.5 0.9 1.0
CA A:MET708 4.7 0.2 1.0
OH A:TYR405 4.8 0.4 1.0
CE2 A:TYR405 4.8 0.4 1.0
CE2 A:TYR732 5.0 0.1 1.0
CAW A:ZK11301 5.0 0.9 1.0
CG A:MET708 5.0 0.4 1.0

Fluorine binding site 2 out of 12 in 5kbt

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Fluorine binding site 2 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1301

b:0.9
occ:1.00
FAG A:ZK11301 0.0 0.9 1.0
CAZ A:ZK11301 1.4 0.9 1.0
FAH A:ZK11301 2.2 0.9 1.0
FAF A:ZK11301 2.2 0.9 1.0
CAS A:ZK11301 2.4 0.9 1.0
CAJ A:ZK11301 2.7 0.9 1.0
CB A:PRO478 3.5 0.0 1.0
CE2 A:TYR405 3.6 0.4 1.0
OH A:TYR732 3.6 0.2 1.0
CAR A:ZK11301 3.6 0.9 1.0
OH A:TYR450 3.8 0.8 1.0
CG A:PRO478 3.8 0.8 1.0
CG A:GLU402 3.9 0.5 1.0
CAV A:ZK11301 4.1 0.9 1.0
CD2 A:TYR405 4.1 0.6 1.0
CZ A:TYR405 4.2 0.3 1.0
NAX A:ZK11301 4.2 0.9 1.0
CZ A:TYR732 4.2 0.5 1.0
OH A:TYR405 4.3 0.4 1.0
OG1 A:THR707 4.4 0.5 1.0
CE2 A:TYR732 4.7 0.1 1.0
CD A:GLU402 4.7 0.5 1.0
CAM A:ZK11301 4.7 0.9 1.0
CZ A:TYR450 4.7 0.7 1.0
CAI A:ZK11301 4.8 0.9 1.0
O A:PRO478 4.8 0.6 1.0
CB A:GLU402 4.9 0.9 1.0
CE1 A:TYR732 4.9 0.5 1.0
OE1 A:GLU402 5.0 0.4 1.0
CAW A:ZK11301 5.0 0.9 1.0
NAP A:ZK11301 5.0 0.9 1.0
CAN A:ZK11301 5.0 0.9 1.0
CA A:PRO478 5.0 0.0 1.0

Fluorine binding site 3 out of 12 in 5kbt

Go back to Fluorine Binding Sites List in 5kbt
Fluorine binding site 3 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1301

b:0.9
occ:1.00
FAH A:ZK11301 0.0 0.9 1.0
CAZ A:ZK11301 1.4 0.9 1.0
FAG A:ZK11301 2.2 0.9 1.0
FAF A:ZK11301 2.2 0.9 1.0
CAS A:ZK11301 2.4 0.9 1.0
NAX A:ZK11301 2.6 0.9 1.0
CAR A:ZK11301 2.8 0.9 1.0
CAN A:ZK11301 3.1 0.9 1.0
CAM A:ZK11301 3.2 0.9 1.0
OE1 A:GLU402 3.3 0.4 1.0
CG A:GLU402 3.4 0.5 1.0
CD A:GLU402 3.6 0.5 1.0
CAJ A:ZK11301 3.6 0.9 1.0
OH A:TYR450 3.9 0.8 1.0
CAK A:ZK11301 3.9 0.9 1.0
CAL A:ZK11301 4.0 0.9 1.0
CAI A:ZK11301 4.2 0.9 1.0
SD A:MET708 4.3 0.6 1.0
CB A:MET708 4.3 0.9 1.0
OE2 A:GLU402 4.5 0.8 1.0
OAQ A:ZK11301 4.6 0.9 1.0
CG A:MET708 4.6 0.4 1.0
CAV A:ZK11301 4.8 0.9 1.0
CB A:GLU402 4.8 0.9 1.0
CE2 A:TYR405 4.9 0.4 1.0

Fluorine binding site 4 out of 12 in 5kbt

Go back to Fluorine Binding Sites List in 5kbt
Fluorine binding site 4 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1101

b:0.1
occ:1.00
FAF B:ZK11101 0.0 0.1 1.0
CAZ B:ZK11101 1.4 0.1 1.0
FAG B:ZK11101 2.2 0.1 1.0
FAH B:ZK11101 2.2 0.1 1.0
CAS B:ZK11101 2.4 0.1 1.0
OG1 B:THR707 3.1 0.5 1.0
OH B:TYR732 3.1 0.7 1.0
CAM B:ZK11101 3.2 0.1 1.0
CAR B:ZK11101 3.2 0.1 1.0
CAJ B:ZK11101 3.3 0.1 1.0
NAX B:ZK11101 3.3 0.1 1.0
CB B:MET708 4.0 0.9 1.0
CB B:GLU705 4.1 0.6 1.0
CAK B:ZK11101 4.3 0.1 1.0
N B:MET708 4.3 0.1 1.0
CZ B:TYR732 4.3 0.2 1.0
CB B:THR707 4.4 0.9 1.0
CAI B:ZK11101 4.4 0.1 1.0
CAN B:ZK11101 4.5 0.1 1.0
CAV B:ZK11101 4.5 0.1 1.0
CA B:MET708 4.7 0.9 1.0
OH B:TYR405 4.8 0.5 1.0
CE2 B:TYR405 4.8 0.1 1.0
CG B:MET708 5.0 1.0 1.0
CE2 B:TYR732 5.0 0.4 1.0
CAW B:ZK11101 5.0 0.1 1.0

Fluorine binding site 5 out of 12 in 5kbt

Go back to Fluorine Binding Sites List in 5kbt
Fluorine binding site 5 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1101

b:0.1
occ:1.00
FAG B:ZK11101 0.0 0.1 1.0
CAZ B:ZK11101 1.4 0.1 1.0
FAH B:ZK11101 2.2 0.1 1.0
FAF B:ZK11101 2.2 0.1 1.0
CAS B:ZK11101 2.4 0.1 1.0
CAJ B:ZK11101 2.7 0.1 1.0
CB B:PRO478 3.4 0.0 1.0
CE2 B:TYR405 3.5 0.1 1.0
OH B:TYR732 3.6 0.7 1.0
CAR B:ZK11101 3.6 0.1 1.0
CG B:PRO478 3.8 0.7 1.0
OH B:TYR450 3.9 0.1 1.0
CG B:GLU402 4.0 0.4 1.0
CZ B:TYR405 4.1 0.7 1.0
CD2 B:TYR405 4.1 0.6 1.0
CAV B:ZK11101 4.1 0.1 1.0
CZ B:TYR732 4.2 0.2 1.0
OH B:TYR405 4.2 0.5 1.0
NAX B:ZK11101 4.2 0.1 1.0
OG1 B:THR707 4.4 0.5 1.0
CE2 B:TYR732 4.6 0.4 1.0
CAM B:ZK11101 4.7 0.1 1.0
O B:PRO478 4.8 1.0 1.0
CAI B:ZK11101 4.8 0.1 1.0
CE1 B:TYR732 4.8 0.9 1.0
CZ B:TYR450 4.8 0.8 1.0
CD B:GLU402 4.8 0.6 1.0
CB B:GLU402 4.9 0.1 1.0
CA B:PRO478 4.9 0.8 1.0
CAW B:ZK11101 5.0 0.1 1.0
NAP B:ZK11101 5.0 0.1 1.0
CAN B:ZK11101 5.0 0.1 1.0

Fluorine binding site 6 out of 12 in 5kbt

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Fluorine binding site 6 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1101

b:0.1
occ:1.00
FAH B:ZK11101 0.0 0.1 1.0
CAZ B:ZK11101 1.4 0.1 1.0
FAG B:ZK11101 2.2 0.1 1.0
FAF B:ZK11101 2.2 0.1 1.0
CAS B:ZK11101 2.4 0.1 1.0
NAX B:ZK11101 2.6 0.1 1.0
CAR B:ZK11101 2.8 0.1 1.0
CAN B:ZK11101 3.1 0.1 1.0
CAM B:ZK11101 3.2 0.1 1.0
OE1 B:GLU402 3.3 0.7 1.0
CG B:GLU402 3.3 0.4 1.0
CD B:GLU402 3.6 0.6 1.0
CAJ B:ZK11101 3.6 0.1 1.0
OH B:TYR450 3.9 0.1 1.0
CAK B:ZK11101 3.9 0.1 1.0
CAL B:ZK11101 4.0 0.1 1.0
CAI B:ZK11101 4.2 0.1 1.0
SD B:MET708 4.3 0.6 1.0
CB B:MET708 4.4 0.9 1.0
OE2 B:GLU402 4.5 0.4 1.0
OAQ B:ZK11101 4.6 0.1 1.0
CG B:MET708 4.6 1.0 1.0
CB B:GLU402 4.7 0.1 1.0
CAV B:ZK11101 4.8 0.1 1.0
CE2 B:TYR405 4.8 0.1 1.0

Fluorine binding site 7 out of 12 in 5kbt

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Fluorine binding site 7 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1101

b:0.6
occ:1.00
FAF C:ZK11101 0.0 0.6 1.0
CAZ C:ZK11101 1.4 0.6 1.0
FAG C:ZK11101 2.2 0.6 1.0
FAH C:ZK11101 2.2 0.6 1.0
CAS C:ZK11101 2.4 0.6 1.0
CAM C:ZK11101 3.1 0.6 1.0
CAR C:ZK11101 3.2 0.6 1.0
OH C:TYR732 3.2 0.9 1.0
OG1 C:THR707 3.2 0.4 1.0
CAJ C:ZK11101 3.3 0.6 1.0
NAX C:ZK11101 3.3 0.6 1.0
CB C:MET708 4.1 0.4 1.0
CB C:GLU705 4.1 0.0 1.0
CAK C:ZK11101 4.3 0.6 1.0
CZ C:TYR732 4.3 0.1 1.0
N C:MET708 4.3 0.3 1.0
CAI C:ZK11101 4.4 0.6 1.0
CB C:THR707 4.5 0.4 1.0
CAN C:ZK11101 4.5 0.6 1.0
CAV C:ZK11101 4.5 0.6 1.0
CA C:MET708 4.7 1.0 1.0
CE2 C:TYR405 4.8 0.6 1.0
OH C:TYR405 4.8 0.1 1.0
CG C:MET708 5.0 0.2 1.0
CAW C:ZK11101 5.0 0.6 1.0

Fluorine binding site 8 out of 12 in 5kbt

Go back to Fluorine Binding Sites List in 5kbt
Fluorine binding site 8 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1101

b:0.6
occ:1.00
FAG C:ZK11101 0.0 0.6 1.0
CAZ C:ZK11101 1.4 0.6 1.0
FAH C:ZK11101 2.2 0.6 1.0
FAF C:ZK11101 2.2 0.6 1.0
CAS C:ZK11101 2.4 0.6 1.0
CAJ C:ZK11101 2.7 0.6 1.0
CB C:PRO478 3.5 0.4 1.0
CE2 C:TYR405 3.6 0.6 1.0
CAR C:ZK11101 3.6 0.6 1.0
OH C:TYR732 3.7 0.9 1.0
OH C:TYR450 3.8 0.0 1.0
CG C:PRO478 3.8 0.1 1.0
CG C:GLU402 3.9 0.0 1.0
CAV C:ZK11101 4.1 0.6 1.0
CD2 C:TYR405 4.1 0.5 1.0
CZ C:TYR405 4.2 0.7 1.0
NAX C:ZK11101 4.2 0.6 1.0
CZ C:TYR732 4.3 0.1 1.0
OH C:TYR405 4.3 0.1 1.0
OG1 C:THR707 4.5 0.4 1.0
CD C:GLU402 4.7 0.1 1.0
CZ C:TYR450 4.7 0.8 1.0
CAM C:ZK11101 4.7 0.6 1.0
CE2 C:TYR732 4.8 0.9 1.0
O C:PRO478 4.8 0.2 1.0
CAI C:ZK11101 4.8 0.6 1.0
CB C:GLU402 4.8 1.0 1.0
CE1 C:TYR732 4.9 0.9 1.0
OE1 C:GLU402 4.9 0.4 1.0
CA C:PRO478 5.0 0.4 1.0
CAW C:ZK11101 5.0 0.6 1.0
NAP C:ZK11101 5.0 0.6 1.0
CAN C:ZK11101 5.0 0.6 1.0

Fluorine binding site 9 out of 12 in 5kbt

Go back to Fluorine Binding Sites List in 5kbt
Fluorine binding site 9 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1101

b:0.6
occ:1.00
FAH C:ZK11101 0.0 0.6 1.0
CAZ C:ZK11101 1.4 0.6 1.0
FAG C:ZK11101 2.2 0.6 1.0
FAF C:ZK11101 2.2 0.6 1.0
CAS C:ZK11101 2.4 0.6 1.0
NAX C:ZK11101 2.6 0.6 1.0
CAR C:ZK11101 2.8 0.6 1.0
CAN C:ZK11101 3.1 0.6 1.0
CAM C:ZK11101 3.2 0.6 1.0
OE1 C:GLU402 3.3 0.4 1.0
CG C:GLU402 3.4 0.0 1.0
CD C:GLU402 3.5 0.1 1.0
CAJ C:ZK11101 3.6 0.6 1.0
OH C:TYR450 3.9 0.0 1.0
CAK C:ZK11101 3.9 0.6 1.0
CAL C:ZK11101 4.0 0.6 1.0
CAI C:ZK11101 4.2 0.6 1.0
SD C:MET708 4.3 0.5 1.0
CB C:MET708 4.4 0.4 1.0
OE2 C:GLU402 4.5 0.6 1.0
OAQ C:ZK11101 4.5 0.6 1.0
CG C:MET708 4.6 0.2 1.0
CAV C:ZK11101 4.8 0.6 1.0
CB C:GLU402 4.8 1.0 1.0
CE2 C:TYR405 4.9 0.6 1.0
CZ C:TYR450 5.0 0.8 1.0

Fluorine binding site 10 out of 12 in 5kbt

Go back to Fluorine Binding Sites List in 5kbt
Fluorine binding site 10 out of 12 in the Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Cryo-Em Structure of GLUA2-1XSTZ Complex at 6.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1101

b:0.1
occ:1.00
FAF D:ZK11101 0.0 0.1 1.0
CAZ D:ZK11101 1.4 0.1 1.0
FAG D:ZK11101 2.2 0.1 1.0
FAH D:ZK11101 2.2 0.1 1.0
CAS D:ZK11101 2.4 0.1 1.0
OH D:TYR732 3.0 0.4 1.0
CAM D:ZK11101 3.1 0.1 1.0
CAR D:ZK11101 3.2 0.1 1.0
OG1 D:THR707 3.2 0.6 1.0
CAJ D:ZK11101 3.3 0.1 1.0
NAX D:ZK11101 3.3 0.1 1.0
CZ D:TYR732 4.2 0.8 1.0
CB D:GLU705 4.2 0.8 1.0
CB D:MET708 4.3 0.0 1.0
CAK D:ZK11101 4.3 0.1 1.0
CB D:THR707 4.4 0.8 1.0
CAI D:ZK11101 4.4 0.1 1.0
N D:MET708 4.5 0.5 1.0
CAN D:ZK11101 4.5 0.1 1.0
CAV D:ZK11101 4.5 0.1 1.0
CE2 D:TYR405 4.7 0.4 1.0
OH D:TYR405 4.8 0.1 1.0
CE2 D:TYR732 4.8 0.8 1.0
CA D:MET708 4.9 0.9 1.0
CE1 D:TYR732 5.0 0.5 1.0
CAW D:ZK11101 5.0 0.1 1.0

Reference:

E.C.Twomey, M.V.Yelshanskaya, R.A.Grassucci, J.Frank, A.I.Sobolevsky. Elucidation of Ampa Receptor-Stargazin Complexes By Cryo-Electron Microscopy. Science V. 353 83 2016.
ISSN: ESSN 1095-9203
PubMed: 27365450
DOI: 10.1126/SCIENCE.AAF8411
Page generated: Sun Dec 13 12:26:10 2020

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