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Fluorine in PDB 5lia: Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor

Enzymatic activity of Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor

All present enzymatic activity of Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor:
3.1.4.39;

Protein crystallography data

The structure of Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor, PDB code: 5lia was solved by A.P.Turnbull, P.Shah, A.Cheasty, T.Raynham, L.Pang, P.Owen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.92
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 61.160, 61.580, 66.140, 85.77, 72.68, 80.21
R / Rfree (%) 16 / 20.1

Other elements in 5lia:

The structure of Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor also contains other interesting chemical elements:

Potassium (K) 1 atom
Zinc (Zn) 2 atoms
Calcium (Ca) 1 atom
Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor (pdb code 5lia). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor, PDB code: 5lia:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 5lia

Go back to Fluorine Binding Sites List in 5lia
Fluorine binding site 1 out of 3 in the Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F908

b:40.3
occ:1.00
FAC A:6XN908 0.0 40.3 1.0
CBI A:6XN908 1.4 39.4 1.0
FAD A:6XN908 2.2 34.1 1.0
FAE A:6XN908 2.3 41.3 1.0
OAX A:6XN908 2.3 34.3 1.0
CBB A:6XN908 2.8 29.1 1.0
CG2 A:ILE167 3.3 24.6 1.0
CAM A:6XN908 3.4 28.5 1.0
CE2 A:PHE273 3.4 27.6 1.0
CD1 A:ILE167 3.6 24.6 1.0
CAN A:6XN908 3.7 27.1 1.0
CB A:ILE167 3.8 23.8 1.0
CD2 A:PHE273 3.8 26.6 1.0
CG1 A:ILE167 4.0 24.2 1.0
CB A:ALA304 4.4 24.7 1.0
CAK A:6XN908 4.5 28.0 1.0
CZ A:PHE273 4.5 26.8 1.0
CAL A:6XN908 4.7 28.4 1.0
SD A:MET512 4.8 29.5 1.0

Fluorine binding site 2 out of 3 in 5lia

Go back to Fluorine Binding Sites List in 5lia
Fluorine binding site 2 out of 3 in the Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F908

b:34.1
occ:1.00
FAD A:6XN908 0.0 34.1 1.0
CBI A:6XN908 1.3 39.4 1.0
FAC A:6XN908 2.2 40.3 1.0
FAE A:6XN908 2.2 41.3 1.0
OAX A:6XN908 2.3 34.3 1.0
CBB A:6XN908 2.8 29.1 1.0
CAN A:6XN908 2.9 27.1 1.0
N A:ALA217 3.7 19.7 1.0
CB A:LEU216 3.7 21.9 1.0
CA A:ALA217 3.7 20.1 1.0
C A:LEU216 3.8 22.2 1.0
CB A:ALA217 4.0 20.8 1.0
O A:LEU216 4.0 23.0 1.0
CAM A:6XN908 4.0 28.5 1.0
CAL A:6XN908 4.2 28.4 1.0
CE2 A:PHE273 4.2 27.6 1.0
O A:LEU213 4.4 20.3 1.0
CE A:MET512 4.4 27.8 1.0
CA A:LEU216 4.4 22.1 1.0
CD2 A:PHE273 4.5 26.6 1.0
SD A:MET512 4.8 29.5 1.0
CG A:LEU216 5.0 25.5 1.0

Fluorine binding site 3 out of 3 in 5lia

Go back to Fluorine Binding Sites List in 5lia
Fluorine binding site 3 out of 3 in the Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Murine Autotaxin in Complex with A Small Molecule Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F908

b:41.3
occ:1.00
FAE A:6XN908 0.0 41.3 1.0
CBI A:6XN908 1.4 39.4 1.0
FAD A:6XN908 2.2 34.1 1.0
OAX A:6XN908 2.2 34.3 1.0
FAC A:6XN908 2.3 40.3 1.0
CBB A:6XN908 3.5 29.1 1.0
CG2 A:ILE167 3.6 24.6 1.0
CB A:LEU216 3.7 21.9 1.0
CG1 A:VAL356 4.1 23.1 1.0
CD1 A:LEU216 4.2 24.8 1.0
CAN A:6XN908 4.3 27.1 1.0
CG A:LEU216 4.3 25.5 1.0
SD A:MET512 4.3 29.5 1.0
CE A:MET512 4.4 27.8 1.0
CAM A:6XN908 4.5 28.5 1.0
CD2 A:LEU216 4.5 26.5 1.0
CB A:ILE167 4.6 23.8 1.0
CG1 A:ILE167 4.7 24.2 1.0
C A:LEU216 4.7 22.2 1.0
CD1 A:ILE167 4.7 24.6 1.0
CA A:LEU216 4.8 22.1 1.0
O A:LEU216 4.8 23.0 1.0

Reference:

P.Shah, A.Cheasty, C.Foxton, T.Raynham, M.Farooq, I.F.Gutierrez, A.Lejeune, M.Pritchard, A.Turnbull, L.Pang, P.Owen, S.Boyd, A.Stowell, A.Jordan, N.M.Hamilton, J.R.Hitchin, M.Stockley, E.Macdonald, M.J.Quesada, E.Trivier, J.Skeete, H.Ovaa, W.H.Moolenaar, H.Ryder. Discovery of Potent Inhibitors of the Lysophospholipase Autotaxin. Bioorg. Med. Chem. Lett. V. 26 5403 2016.
ISSN: ESSN 1464-3405
PubMed: 27780639
DOI: 10.1016/J.BMCL.2016.10.036
Page generated: Thu Aug 1 11:22:03 2024

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