Fluorine in PDB 5mjx: 2'F-Ana/Dna Chimeric Tba Quadruplex Structure

The binding sites of Fluorine atom in the 2'F-Ana/Dna Chimeric Tba Quadruplex Structure (pdb code 5mjx). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the 2'F-Ana/Dna Chimeric Tba Quadruplex Structure, PDB code: 5mjx:

Fluorine binding site 1 out of 1 in the 2'F-Ana/Dna Chimeric Tba Quadruplex Structure


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of 2'F-Ana/Dna Chimeric Tba Quadruplex Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:F3 b:0.0 occ:1.00 F2' A:TAF3 0.0 0.0 1.0 C2' A:TAF3 1.4 0.0 1.0 H2'' A:TAF3 2.0 0.0 1.0 H3' A:TAF3 2.3 0.0 1.0 C3' A:TAF3 2.4 0.0 1.0 C1' A:TAF3 2.5 0.0 1.0 H6 A:DT4 2.5 0.0 1.0 H72 A:DT4 2.5 0.0 1.0 H6 A:TAF3 2.7 0.0 1.0 N1 A:TAF3 2.7 0.0 1.0 C6 A:TAF3 2.9 0.0 1.0 H2'' A:DG2 2.9 0.0 1.0 H1' A:TAF3 3.2 0.0 1.0 O4' A:TAF3 3.3 0.0 1.0 C7 A:DT4 3.3 0.0 1.0 O5' A:DT4 3.3 0.0 1.0 O3' A:TAF3 3.4 0.0 1.0 H73 A:DT4 3.4 0.0 1.0 C6 A:DT4 3.4 0.0 1.0 C4' A:TAF3 3.4 0.0 1.0 H2' A:DG2 3.4 0.0 1.0 C2' A:DG2 3.6 0.0 1.0 C2 A:TAF3 3.7 0.0 1.0 C5 A:DT4 3.8 0.0 1.0 P A:DT4 3.9 0.0 1.0 C5 A:TAF3 3.9 0.0 1.0 H5' A:DT4 3.9 0.0 1.0 O5' A:TAF3 3.9 0.0 1.0 H2' A:DT4 4.0 0.0 1.0 O4' A:DT4 4.0 0.0 1.0 OP2 A:DT4 4.1 0.0 1.0 C5' A:DT4 4.1 0.0 1.0 H8 A:DG2 4.2 0.0 1.0 H4' A:TAF3 4.2 0.0 1.0 H71 A:DT4 4.3 0.0 1.0 C5' A:TAF3 4.3 0.0 1.0 C8 A:DG2 4.3 0.0 1.0 O2 A:TAF3 4.3 0.0 1.0 N9 A:DG2 4.3 0.0 1.0 H72 A:TAF3 4.4 0.0 1.0 C1' A:DG2 4.5 0.0 1.0 N1 A:DT4 4.5 0.0 1.0 N3 A:TAF3 4.6 0.0 1.0 C4' A:DT4 4.6 0.0 1.0 C5M A:TAF3 4.7 0.0 1.0 H1' A:DG2 4.7 0.0 1.0 C1' A:DT4 4.7 0.0 1.0 C2' A:DT4 4.7 0.0 1.0 C4 A:TAF3 4.7 0.0 1.0 H5'' A:TAF3 4.8 0.0 1.0 N7 A:DG2 4.9 0.0 1.0 H73 A:TAF3 4.9 0.0 1.0 C3' A:DG2 4.9 0.0 1.0 C4 A:DG2 4.9 0.0 1.0

J.Lietard, H.Abou Assi, I.Gomez-Pinto, C.Gonzalez, M.M.Somoza, M.J.Damha. Mapping the Affinity Landscape of Thrombin-Binding Aptamers on 2 F-Ana/Dna Chimeric G-Quadruplex Microarrays. Nucleic Acids Res. V. 45 1619 2017.
ISSN: ESSN 1362-4962
PubMed: 28100695
DOI: 10.1093/NAR/GKW1357