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Fluorine in PDB 5orp: Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment

Enzymatic activity of Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment

All present enzymatic activity of Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment, PDB code: 5orp was solved by P.J.Mcintyre, P.M.Collins, F.Von Delft, R.Bayliss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.84 / 2.19
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 82.060, 82.060, 174.910, 90.00, 90.00, 120.00
R / Rfree (%) 20.7 / 27.3

Other elements in 5orp:

The structure of Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment (pdb code 5orp). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment, PDB code: 5orp:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 5orp

Go back to Fluorine Binding Sites List in 5orp
Fluorine binding site 1 out of 3 in the Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:86.3
occ:1.00
F2 A:A5K404 0.0 86.3 1.0
C A:A5K404 1.3 78.3 1.0
F A:A5K404 2.1 76.9 1.0
F1 A:A5K404 2.1 90.3 1.0
C1 A:A5K404 2.4 79.0 1.0
C10 A:A5K404 3.2 75.1 1.0
C2 A:A5K404 3.2 81.7 1.0
CZ2 A:TRP128 3.3 73.1 1.0
CE2 A:TRP128 3.5 70.3 1.0
NE1 A:TRP128 3.6 64.5 1.0
CG2 A:ILE209 4.0 48.4 1.0
CH2 A:TRP128 4.1 73.8 1.0
CD1 A:ILE209 4.3 47.6 1.0
CD2 A:TRP128 4.4 68.9 1.0
C9 A:A5K404 4.4 89.4 1.0
N A:A5K404 4.4 87.7 1.0
CD1 A:TRP128 4.6 64.8 1.0
CZ A:PHE133 4.7 59.6 1.0
CB A:TYR197 4.8 56.9 1.0
CZ3 A:TRP128 4.9 73.1 1.0
CE1 A:PHE133 4.9 58.1 1.0
C3 A:A5K404 4.9 89.7 1.0
CG A:GLU152 5.0 69.2 1.0

Fluorine binding site 2 out of 3 in 5orp

Go back to Fluorine Binding Sites List in 5orp
Fluorine binding site 2 out of 3 in the Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:90.3
occ:1.00
F1 A:A5K404 0.0 90.3 1.0
C A:A5K404 1.3 78.3 1.0
F2 A:A5K404 2.1 86.3 1.0
F A:A5K404 2.1 76.9 1.0
C1 A:A5K404 2.4 79.0 1.0
C10 A:A5K404 2.8 75.1 1.0
CG2 A:ILE209 3.3 48.4 1.0
C2 A:A5K404 3.6 81.7 1.0
CD2 A:LEU159 3.7 53.1 1.0
CD2 A:PHE157 4.0 58.6 1.0
CD2 A:TYR197 4.1 57.9 1.0
C9 A:A5K404 4.1 89.4 1.0
CB A:LEU159 4.3 45.2 1.0
CE2 A:PHE157 4.3 53.6 1.0
CG A:LEU159 4.4 54.7 1.0
CG A:TYR197 4.6 58.9 1.0
CB A:TYR197 4.6 56.9 1.0
CD1 A:LEU159 4.7 45.2 1.0
N A:A5K404 4.7 87.7 1.0
CE2 A:TYR197 4.8 55.6 1.0
CG A:PHE157 4.8 58.1 1.0
CB A:ILE209 4.8 48.1 1.0
CE1 A:PHE133 4.9 58.1 1.0
C3 A:A5K404 4.9 89.7 1.0
CD1 A:ILE209 5.0 47.6 1.0

Fluorine binding site 3 out of 3 in 5orp

Go back to Fluorine Binding Sites List in 5orp
Fluorine binding site 3 out of 3 in the Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Aurora-A Kinase in Complex with An Allosterically Binding Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:76.9
occ:1.00
F A:A5K404 0.0 76.9 1.0
C A:A5K404 1.3 78.3 1.0
F2 A:A5K404 2.1 86.3 1.0
F1 A:A5K404 2.1 90.3 1.0
C1 A:A5K404 2.4 79.0 1.0
C2 A:A5K404 2.8 81.7 1.0
CG A:GLU152 3.3 69.2 1.0
CB A:GLU152 3.5 58.4 1.0
C10 A:A5K404 3.6 75.1 1.0
CD2 A:LEU159 3.7 53.1 1.0
CE1 A:PHE133 3.8 58.1 1.0
N A:A5K404 4.1 87.7 1.0
CZ2 A:TRP128 4.2 73.1 1.0
CZ A:PHE133 4.2 59.6 1.0
CH2 A:TRP128 4.3 73.8 1.0
CD A:GLU152 4.4 72.3 1.0
CB A:PHE157 4.5 60.0 1.0
CD2 A:PHE157 4.5 58.6 1.0
OE1 A:GLU152 4.6 68.0 1.0
CE2 A:TRP128 4.7 70.3 1.0
C9 A:A5K404 4.7 89.4 1.0
CG A:PHE157 4.8 58.1 1.0
CA A:GLU152 4.8 56.8 1.0
CZ3 A:TRP128 4.9 73.1 1.0
C3 A:A5K404 4.9 89.7 1.0
CG2 A:ILE209 4.9 48.4 1.0
CG A:LEU159 5.0 54.7 1.0
OG A:SER155 5.0 60.6 1.0
CD1 A:PHE133 5.0 54.4 1.0

Reference:

P.J.Mcintyre, P.M.Collins, L.Vrzal, K.Birchall, L.H.Arnold, C.Mpamhanga, P.J.Coombs, S.G.Burgess, M.W.Richards, A.Winter, V.Veverka, F.V.Delft, A.Merritt, R.Bayliss. Characterization of Three Druggable Hot-Spots in the Aurora-A/TPX2 Interaction Using Biochemical, Biophysical, and Fragment-Based Approaches. Acs Chem. Biol. V. 12 2906 2017.
ISSN: ESSN 1554-8937
PubMed: 29045126
DOI: 10.1021/ACSCHEMBIO.7B00537
Page generated: Thu Aug 1 12:33:48 2024

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