Atomistry » Fluorine » PDB 5p93-5pzk » 5p97
Atomistry »
  Fluorine »
    PDB 5p93-5pzk »
      5p97 »

Fluorine in PDB 5p97: Rat Catechol O-Methyltransferase in Complex with 5-(4-Fluorophenyl)-2, 3-Dihydroxy-N-[(1-Methylimidazol-4-Yl)Methyl]Benzamide at 1.30A

Enzymatic activity of Rat Catechol O-Methyltransferase in Complex with 5-(4-Fluorophenyl)-2, 3-Dihydroxy-N-[(1-Methylimidazol-4-Yl)Methyl]Benzamide at 1.30A

All present enzymatic activity of Rat Catechol O-Methyltransferase in Complex with 5-(4-Fluorophenyl)-2, 3-Dihydroxy-N-[(1-Methylimidazol-4-Yl)Methyl]Benzamide at 1.30A:
2.1.1.6;

Protein crystallography data

The structure of Rat Catechol O-Methyltransferase in Complex with 5-(4-Fluorophenyl)-2, 3-Dihydroxy-N-[(1-Methylimidazol-4-Yl)Methyl]Benzamide at 1.30A, PDB code: 5p97 was solved by A.Ehler, C.Lerner, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.75 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.234, 53.978, 80.025, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 18.9

Other elements in 5p97:

The structure of Rat Catechol O-Methyltransferase in Complex with 5-(4-Fluorophenyl)-2, 3-Dihydroxy-N-[(1-Methylimidazol-4-Yl)Methyl]Benzamide at 1.30A also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Rat Catechol O-Methyltransferase in Complex with 5-(4-Fluorophenyl)-2, 3-Dihydroxy-N-[(1-Methylimidazol-4-Yl)Methyl]Benzamide at 1.30A (pdb code 5p97). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Rat Catechol O-Methyltransferase in Complex with 5-(4-Fluorophenyl)-2, 3-Dihydroxy-N-[(1-Methylimidazol-4-Yl)Methyl]Benzamide at 1.30A, PDB code: 5p97:

Fluorine binding site 1 out of 1 in 5p97

Go back to Fluorine Binding Sites List in 5p97
Fluorine binding site 1 out of 1 in the Rat Catechol O-Methyltransferase in Complex with 5-(4-Fluorophenyl)-2, 3-Dihydroxy-N-[(1-Methylimidazol-4-Yl)Methyl]Benzamide at 1.30A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Rat Catechol O-Methyltransferase in Complex with 5-(4-Fluorophenyl)-2, 3-Dihydroxy-N-[(1-Methylimidazol-4-Yl)Methyl]Benzamide at 1.30A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F308

b:13.3
occ:1.00
F13 A:77K308 0.0 13.3 1.0
C10 A:77K308 1.4 12.2 1.0
C9 A:77K308 2.4 11.6 1.0
C11 A:77K308 2.4 12.6 1.0
C8 A:77K308 3.6 11.6 1.0
C12 A:77K308 3.6 11.3 1.0
C3' A:NHE305 3.6 22.3 1.0
C4' A:NHE305 4.0 23.8 1.0
C7 A:77K308 4.1 10.2 1.0

Reference:

C.Lerner, M.G.Rudolph. Crystal Structure of A Comt Complex To Be Published.
Page generated: Sun Dec 13 12:30:33 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy