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Fluorine in PDB 5qp2: Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1170065264

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1170065264

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1170065264:
3.6.1.62;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1170065264, PDB code: 5qp2 was solved by E.R.Nelson, S.Velupillai, R.Talon, P.M.Collins, T.Krojer, D.Wang, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, C.H.Arrowsmith, C.Bountra, K.Huber, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.49 / 1.83
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.811, 60.694, 65.267, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 25

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1170065264 (pdb code 5qp2). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1170065264, PDB code: 5qp2:

Fluorine binding site 1 out of 1 in 5qp2

Go back to Fluorine Binding Sites List in 5qp2
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1170065264


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1170065264 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F306

b:47.5
occ:0.62
 F1 A:LHS306 0.0 47.5 0.6
C10 A:LHS306 1.4 51.5 0.6
C11 A:LHS306 2.3 51.3 0.6
C9 A:LHS306 2.3 49.2 0.6
CD A:GLU148 3.2 44.3 1.0
OE2 A:GLU148 3.2 47.6 1.0
O A:HOH466 3.5 48.1 1.0
CD1 A:ILE194 3.5 35.5 1.0
OE1 A:GLU148 3.6 39.0 1.0
C8 A:LHS306 3.6 49.0 0.6
C12 A:LHS306 3.6 51.5 0.6
CG A:GLU148 3.7 38.6 1.0
C7 A:LHS306 4.1 49.7 0.6
NZ A:LYS121 4.5 67.8 1.0
CE A:LYS121 4.5 61.2 1.0
O A:LYS128 4.6 34.2 1.0
CG1 A:ILE194 4.6 33.2 1.0
O A:GLU193 4.8 35.9 1.0
O A:HOH403 4.8 54.9 1.0
CB A:GLU148 4.8 34.8 1.0
CD A:LYS121 4.9 57.3 1.0
O A:HOH415 4.9 39.4 1.0
CB A:GLU193 5.0 53.9 1.0

Reference:

E.R.Nelson, S.Velupillai, R.Talon, P.M.Collins, T.Krojer, D.Wang, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, C.H.Arrowsmith, C.Bountra, K.Huber, F.Von Delft. Pandda Analysis Group Deposition To Be Published.
Page generated: Thu Aug 1 13:20:57 2024

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