Atomistry » Fluorine » PDB 5qot-5qtq » 5qp6
Atomistry »
  Fluorine »
    PDB 5qot-5qtq »
      5qp6 »

Fluorine in PDB 5qp6: Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1662802141

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1662802141

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1662802141:
3.6.1.62;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1662802141, PDB code: 5qp6 was solved by E.R.Nelson, S.Velupillai, R.Talon, P.M.Collins, T.Krojer, D.Wang, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, C.H.Arrowsmith, C.Bountra, K.Huber, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.46 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.181, 60.380, 65.593, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 25.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1662802141 (pdb code 5qp6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1662802141, PDB code: 5qp6:

Fluorine binding site 1 out of 1 in 5qp6

Go back to Fluorine Binding Sites List in 5qp6
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1662802141


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z1662802141 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F306

b:48.8
occ:0.43
 F1 A:LJM306 0.0 48.8 0.4
C11 A:LJM306 1.4 57.0 0.4
C12 A:LJM306 2.3 56.1 0.4
C10 A:LJM306 2.4 60.5 0.4
OE2 A:GLU148 3.2 43.6 1.0
CD A:GLU148 3.2 38.7 1.0
O A:HOH424 3.3 46.6 1.0
OE1 A:GLU148 3.5 32.6 1.0
CD1 A:ILE194 3.6 25.3 1.0
C13 A:LJM306 3.6 57.1 0.4
C9 A:LJM306 3.6 60.4 0.4
CG A:GLU148 3.9 30.9 1.0
C8 A:LJM306 4.1 58.5 0.4
NZ A:LYS121 4.3 65.6 1.0
CD A:LYS121 4.4 49.8 1.0
O A:LYS128 4.6 28.2 1.0
CG1 A:ILE194 4.6 26.2 1.0
O A:HOH408 4.8 49.9 1.0
O A:GLU193 4.8 29.2 1.0
CB A:GLU148 4.9 27.0 1.0

Reference:

E.R.Nelson, S.Velupillai, R.Talon, P.M.Collins, T.Krojer, D.Wang, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, C.H.Arrowsmith, C.Bountra, K.Huber, F.Von Delft. Pandda Analysis Group Deposition To Be Published.
Page generated: Thu Aug 1 13:21:42 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy