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Fluorine in PDB 5qpy: Pandda Analysis Group Deposition -- Crystal Structure of T. Cruzi Fpps in Complex with FMOPL000449A

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of T. Cruzi Fpps in Complex with FMOPL000449A, PDB code: 5qpy was solved by J.K.Petrick, E.R.Nelson, L.Muenzker, T.Krojer, A.Douangamath, J.Brandao-Neto, F.Von Delft, C.Dekker, W.Jahnke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.95 / 1.67
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 57.824, 57.824, 395.675, 90.00, 90.00, 120.00
R / Rfree (%) 19.4 / 23.8

Other elements in 5qpy:

The structure of Pandda Analysis Group Deposition -- Crystal Structure of T. Cruzi Fpps in Complex with FMOPL000449A also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of T. Cruzi Fpps in Complex with FMOPL000449A (pdb code 5qpy). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of T. Cruzi Fpps in Complex with FMOPL000449A, PDB code: 5qpy:

Fluorine binding site 1 out of 1 in 5qpy

Go back to Fluorine Binding Sites List in 5qpy
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of T. Cruzi Fpps in Complex with FMOPL000449A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of T. Cruzi Fpps in Complex with FMOPL000449A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F406

b:34.4
occ:0.70
F18 A:JH1406 0.0 34.4 0.7
C15 A:JH1406 1.3 32.2 0.7
C14 A:JH1406 2.3 32.4 0.7
C16 A:JH1406 2.4 30.1 0.7
CB A:GLU244 3.3 21.4 0.7
CG A:GLU244 3.4 24.0 0.7
CE2 A:TYR200 3.6 17.8 1.0
C13 A:JH1406 3.6 30.3 0.7
C17 A:JH1406 3.7 31.9 0.7
CD2 A:TYR200 3.7 18.8 1.0
O A:HOH531 3.9 39.2 0.7
CD A:GLU244 4.1 25.6 0.7
CA A:LYS201 4.1 17.5 1.0
OE2 A:GLU244 4.1 29.5 0.7
C12 A:JH1406 4.1 32.2 0.7
CA A:GLU244 4.2 20.1 0.7
OH A:TYR324 4.3 24.0 1.0
CG A:LYS201 4.4 26.7 1.0
CB A:LYS201 4.4 17.6 1.0
O A:GLU244 4.4 20.6 0.7
N A:LYS201 4.5 15.7 1.0
C A:GLU244 4.6 18.8 0.7
CG2 A:VAL248 4.6 19.0 1.0
CB A:VAL204 4.8 19.9 1.0
CZ A:TYR200 4.8 18.3 1.0
CG1 A:VAL204 4.8 23.3 1.0
CG2 A:VAL204 5.0 20.2 1.0

Reference:

J.K.Petrick, L.Muenzker, F.Von Delft, W.Jahnke. Pandda Analysis Group Deposition - Fpps Screened Against the Dsi Fragment Library To Be Published.
Page generated: Sun Dec 13 12:32:14 2020

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