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Fluorine in PDB 5rkm: Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z2017168803

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z2017168803, PDB code: 5rkm was solved by H.Grosjean, A.Aimon, T.Krojer, R.Talon, A.Douangamath, L.Koekemoer, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, P.C.Biggin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.84 / 1.28
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.490, 27.030, 55.830, 90.00, 100.60, 90.00
R / Rfree (%) 18.8 / 21.9

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z2017168803 (pdb code 5rkm). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z2017168803, PDB code: 5rkm:

Fluorine binding site 1 out of 1 in 5rkm

Go back to Fluorine Binding Sites List in 5rkm
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z2017168803


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z2017168803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1501

b:18.2
occ:0.66
F A:O0V1501 0.0 18.2 0.7
C8 A:O0V1501 1.3 16.5 0.7
C7 A:O0V1501 2.3 15.4 0.7
C4 A:O0V1501 2.4 15.9 0.7
C3 A:O0V1501 2.7 16.6 0.7
N A:O0V1501 2.9 16.2 0.7
CE1 A:TYR1350 3.3 18.1 1.0
CD1 A:ILE1403 3.4 14.9 1.0
CZ A:TYR1350 3.4 18.8 1.0
OH A:TYR1350 3.5 19.3 1.0
C6 A:O0V1501 3.6 14.6 0.7
O A:HOH1814 3.6 39.3 1.0
N1 A:O0V1501 3.7 14.4 0.7
O A:HOH1658 3.8 25.5 1.0
CD1 A:TYR1350 4.1 17.3 1.0
C5 A:O0V1501 4.1 14.6 0.7
CE2 A:TYR1395 4.1 16.8 1.0
CD2 A:TYR1395 4.2 15.7 1.0
CE2 A:TYR1350 4.2 17.8 1.0
CB A:ILE1403 4.3 12.1 1.0
C1 A:O0V1501 4.4 15.6 0.7
CG2 A:ILE1403 4.4 13.1 1.0
CG1 A:ILE1403 4.4 13.2 1.0
O A:HOH1758 4.6 41.2 1.0
O A:HOH1736 4.6 16.5 1.0
CG A:TYR1350 4.8 16.6 1.0
CD2 A:TYR1350 4.8 16.9 1.0

Reference:

H.Grosjean, A.Aimon, T.Krojer, R.Talon, A.Douangamath, L.Koekemoer, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, P.C.Biggin. Pandda Analysis Group Deposition of Ground-State Model To Be Published.
Page generated: Thu Aug 1 13:55:48 2024

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