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Fluorine in PDB 5rkr: Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z1432018343

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z1432018343, PDB code: 5rkr was solved by H.Grosjean, A.Aimon, T.Krojer, R.Talon, A.Douangamath, L.Koekemoer, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, P.C.Biggin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.98 / 1.37
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.270, 27.080, 55.980, 90.00, 100.33, 90.00
R / Rfree (%) 18.6 / 22

Other elements in 5rkr:

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z1432018343 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z1432018343 (pdb code 5rkr). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z1432018343, PDB code: 5rkr:

Fluorine binding site 1 out of 1 in 5rkr

Go back to Fluorine Binding Sites List in 5rkr
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z1432018343


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z1432018343 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1501

b:24.6
occ:0.62
F A:O0G1501 0.0 24.6 0.6
C7 A:O0G1501 1.3 25.1 0.6
C6 A:O0G1501 2.4 25.9 0.6
C3 A:O0G1501 2.4 25.0 0.6
N A:O0G1501 2.8 24.5 0.6
C5 A:O0G1501 3.6 26.6 0.6
N1 A:O0G1501 3.7 25.7 0.6
O A:HOH1650 3.8 18.1 1.0
C4 A:O0G1501 4.1 26.2 0.6
CD1 A:PHE1413 4.2 17.5 1.0
C1 A:O0G1501 4.3 23.9 0.6
CE1 A:PHE1413 4.5 18.1 1.0
O A:HOH1682 4.8 19.2 1.0
O A:HOH1781 4.8 62.0 1.0

Reference:

H.Grosjean, A.Aimon, T.Krojer, R.Talon, A.Douangamath, L.Koekemoer, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, P.C.Biggin. Pandda Analysis Group Deposition of Ground-State Model To Be Published.
Page generated: Sun Dec 13 12:34:01 2020

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