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Fluorine in PDB 5rse: Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000336438345

Enzymatic activity of Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000336438345

All present enzymatic activity of Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000336438345:
3.4.19.12;

Protein crystallography data

The structure of Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000336438345, PDB code: 5rse was solved by G.J.Correy, I.D.Young, M.C.Thompson, J.S.Fraser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.71 / 1.00
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 88.789, 88.789, 39.450, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 20.8

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000336438345 (pdb code 5rse). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000336438345, PDB code: 5rse:

Fluorine binding site 1 out of 1 in 5rse

Go back to Fluorine Binding Sites List in 5rse
Fluorine binding site 1 out of 1 in the Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000336438345


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000336438345 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:34.6
occ:0.72
F01 A:W5P201 0.0 34.6 0.7
C02 A:W5P201 1.3 33.1 0.7
H021 A:W5P201 1.8 39.8 0.7
C07 A:W5P201 2.1 31.9 0.7
H072 A:W5P201 2.1 38.3 0.7
C03 A:W5P201 2.2 32.6 0.7
H031 A:W5P201 2.3 39.2 0.7
N06 A:W5P201 2.7 30.0 0.7
H071 A:W5P201 2.9 38.3 0.7
H041 A:W5P201 3.0 38.4 0.7
H151 A:W5P201 3.0 28.8 0.7
H032 A:W5P201 3.0 39.2 0.7
C04 A:W5P201 3.0 31.9 0.7
C05 A:W5P201 3.3 31.0 0.7
C08 A:W5P201 3.5 26.7 0.7
C15 A:W5P201 3.6 24.0 0.7
HB3 A:PHE156 3.6 30.1 1.0
HD1 A:PHE156 3.7 34.8 1.0
O A:HOH442 3.7 19.1 1.0
H051 A:W5P201 3.7 37.2 0.7
C16 A:W5P201 3.8 24.4 0.7
H042 A:W5P201 3.9 38.4 0.7
HA3 A:GLY130 4.1 21.6 1.0
H052 A:W5P201 4.1 37.2 0.7
CD1 A:PHE156 4.4 29.0 1.0
HA2 A:GLY130 4.4 21.6 1.0
CB A:PHE156 4.6 25.0 1.0
N09 A:W5P201 4.7 25.7 0.7
CA A:GLY130 4.7 18.0 1.0
HA2 A:GLY48 4.8 21.7 1.0
C14 A:W5P201 4.8 23.2 0.7
HB2 A:ASP157 4.8 38.1 1.0
HB2 A:PHE156 4.9 30.1 1.0
CG A:PHE156 4.9 27.6 1.0
H A:ASP157 5.0 32.7 1.0

Reference:

C.J.Correy, J.S.Fraser. Fragment Screen Against Sars-Cov-2 Nsp Macrodomain To Be Published.
Page generated: Thu Dec 17 11:12:30 2020

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