Atomistry » Fluorine » PDB 5rmf-5rz6 » 5rw0
Atomistry »
  Fluorine »
    PDB 5rmf-5rz6 »
      5rw0 »

Fluorine in PDB 5rw0: Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446:
1.2.4.2;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446, PDB code: 5rw0 was solved by G.A.Bezerra, W.R.Foster, H.J.Bailey, L.Shrestha, T.Krojer, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, W.W.Yue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 85.07 / 1.67
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 78.130, 147.127, 87.273, 90.00, 102.91, 90.00
R / Rfree (%) 16.1 / 18.7

Other elements in 5rw0:

The structure of Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446 also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446 (pdb code 5rw0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 5 binding sites of Fluorine where determined in the Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446, PDB code: 5rw0:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5;

Fluorine binding site 1 out of 5 in 5rw0

Go back to Fluorine Binding Sites List in 5rw0
Fluorine binding site 1 out of 5 in the Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1001

b:19.8
occ:0.56
 F1 A:WGD1001 0.0 19.8 0.6
C6 A:WGD1001 1.4 19.0 0.6
C7 A:WGD1001 2.4 18.8 0.6
C5 A:WGD1001 2.4 18.7 0.6
N2 A:WGD1001 2.8 18.6 0.6
C8 A:WGD1001 3.1 18.6 0.6
O A:HOH1974 3.1 41.4 1.0
N3 A:WGD1001 3.2 18.5 0.6
O A:HOH1104 3.4 41.1 1.0
O A:HOH1898 3.5 55.6 1.0
C9 A:WGD1001 3.7 18.6 0.6
O A:SER314 3.9 18.1 1.0
O A:ASP312 4.0 14.2 1.0
C4 A:WGD1001 4.2 17.9 0.6
N1 A:WGD1001 4.7 17.2 0.6
C3 A:WGD1001 4.7 17.3 0.6
C A:SER314 4.8 16.7 1.0
O A:HOH1784 4.9 43.6 1.0

Fluorine binding site 2 out of 5 in 5rw0

Go back to Fluorine Binding Sites List in 5rw0
Fluorine binding site 2 out of 5 in the Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1002

b:56.5
occ:0.56
 F1 A:WGD1002 0.0 56.5 0.6
C6 A:WGD1002 1.4 56.7 0.6
C7 A:WGD1002 2.4 56.8 0.6
C5 A:WGD1002 2.4 56.7 0.6
C8 A:WGD1002 2.8 56.9 0.6
N2 A:WGD1002 2.9 56.7 0.6
O A:HOH1230 3.6 19.8 1.0
C9 A:WGD1002 4.3 57.0 0.6
C4 A:WGD1002 4.3 56.4 0.6
N3 A:WGD1002 4.9 57.1 0.6
C3 A:WGD1002 5.0 56.4 0.6

Fluorine binding site 3 out of 5 in 5rw0

Go back to Fluorine Binding Sites List in 5rw0
Fluorine binding site 3 out of 5 in the Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1003

b:37.1
occ:0.68
 F1 A:WGD1003 0.0 37.1 0.7
C6 A:WGD1003 1.4 37.1 0.7
C5 A:WGD1003 2.4 36.6 0.7
C7 A:WGD1003 2.4 37.1 0.7
N2 A:WGD1003 2.8 36.4 0.7
C8 A:WGD1003 3.0 37.2 0.7
O B:ASN350 3.7 18.6 1.0
O A:GLU375 3.9 20.2 1.0
C4 A:WGD1003 4.2 35.5 0.7
C9 A:WGD1003 4.5 38.0 0.7
CD B:PRO352 4.6 15.9 1.0
N1 A:WGD1003 4.6 34.9 0.7
O B:HOH1472 4.6 28.3 1.0
C B:ASN350 4.8 17.2 1.0
C3 A:WGD1003 4.8 34.9 0.7
CD2 B:LEU351 4.9 19.0 1.0
O A:ARG378 5.0 16.1 1.0
C A:GLU375 5.0 19.4 1.0

Fluorine binding site 4 out of 5 in 5rw0

Go back to Fluorine Binding Sites List in 5rw0
Fluorine binding site 4 out of 5 in the Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1001

b:33.1
occ:0.58
 F1 B:WGD1001 0.0 33.1 0.6
C6 B:WGD1001 1.4 32.9 0.6
C7 B:WGD1001 2.4 32.9 0.6
C5 B:WGD1001 2.4 32.8 0.6
N2 B:WGD1001 2.8 32.7 0.6
C8 B:WGD1001 3.1 32.9 0.6
N3 B:WGD1001 3.2 33.1 0.6
O B:HOH1134 3.3 50.1 1.0
C9 B:WGD1001 3.7 32.9 0.6
O B:SER314 4.1 30.6 1.0
O B:ASP312 4.2 23.1 1.0
C4 B:WGD1001 4.2 32.1 0.6
N1 B:WGD1001 4.7 31.4 0.6
C3 B:WGD1001 4.8 31.6 0.6
C B:SER314 4.8 30.8 1.0

Fluorine binding site 5 out of 5 in 5rw0

Go back to Fluorine Binding Sites List in 5rw0
Fluorine binding site 5 out of 5 in the Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Pandda Analysis Group Deposition -- Crystal Structure of DHTKD1 in Complex with Z2444997446 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1002

b:37.5
occ:0.46
 F1 B:WGD1002 0.0 37.5 0.5
C6 B:WGD1002 1.4 37.4 0.5
C7 B:WGD1002 2.4 37.5 0.5
C5 B:WGD1002 2.4 36.9 0.5
O A:HOH2000 2.9 41.1 1.0
O B:HOH1399 2.9 32.1 1.0
N2 B:WGD1002 3.1 36.6 0.5
C4 B:WGD1002 3.2 35.9 0.5
C8 B:WGD1002 3.5 37.2 0.5
O B:GLU375 3.6 18.6 1.0
O A:ASN350 3.7 14.9 1.0
C3 B:WGD1002 4.3 35.0 0.5
N1 B:WGD1002 4.4 34.8 0.5
C9 B:WGD1002 4.6 37.6 0.5
CD A:PRO352 4.6 14.3 1.0
O A:HOH1533 4.7 22.8 1.0
C B:GLU375 4.7 18.7 1.0
O B:ARG378 4.7 16.8 1.0
CD2 A:LEU351 4.7 15.9 1.0
C A:ASN350 4.8 14.5 1.0

Reference:

G.A.Bezerra, W.R.Foster, H.J.Bailey, L.Shrestha, T.Krojer, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, W.W.Yue. Pandda Analysis Group Deposition To Be Published.
Page generated: Thu Aug 1 13:58:58 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy