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Fluorine in PDB 5rxp: INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z2856434944

Enzymatic activity of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z2856434944

All present enzymatic activity of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z2856434944:
3.1.3.36; 3.1.3.56; 3.1.3.86;

Protein crystallography data

The structure of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z2856434944, PDB code: 5rxp was solved by W.J.Bradshaw, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.34 / 1.53
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.490, 79.390, 89.340, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 20.2

Fluorine Binding Sites:

The binding sites of Fluorine atom in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z2856434944 (pdb code 5rxp). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z2856434944, PDB code: 5rxp:

Fluorine binding site 1 out of 1 in 5rxp

Go back to Fluorine Binding Sites List in 5rxp
Fluorine binding site 1 out of 1 in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z2856434944


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z2856434944 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F901

b:39.2
occ:0.78
 F1 A:AWD901 0.0 39.2 0.8
C10 A:AWD901 1.4 39.6 0.8
C11 A:AWD901 2.3 39.2 0.8
C9 A:AWD901 2.4 40.4 0.8
CA A:GLU498 3.4 21.0 1.0
C12 A:AWD901 3.6 41.7 0.8
C8 A:AWD901 3.7 42.0 0.8
CB A:GLU498 3.8 21.7 1.0
CG2 A:VAL479 3.8 12.0 1.0
CB A:LYS477 3.9 17.9 1.0
CG A:GLU498 3.9 25.0 1.0
C7 A:AWD901 4.1 43.8 0.8
N A:GLU498 4.1 19.4 1.0
CD1 A:ILE501 4.2 17.2 1.0
O A:GLU498 4.3 22.1 1.0
CB A:ALA493 4.3 13.8 1.0
C A:GLU498 4.4 20.8 1.0
CG A:LYS477 4.5 20.2 1.0
O A:HIS497 4.6 16.3 1.0
C A:HIS497 4.6 16.3 1.0
CB A:ILE501 4.6 15.6 1.0
CA A:VAL479 4.8 12.5 1.0
CB A:VAL479 4.8 12.2 1.0
CG2 A:ILE501 4.9 16.6 1.0
CD A:GLU498 4.9 27.4 1.0
O A:LYS477 4.9 15.6 1.0
CG1 A:ILE501 5.0 15.9 1.0

Reference:

W.J.Bradshaw, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi. INPP5D Pandda Analysis Group Deposition To Be Published.
Page generated: Sun Dec 13 12:35:58 2020

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