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Fluorine in PDB 5ryp: EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z1929757385

Protein crystallography data

The structure of EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z1929757385, PDB code: 5ryp was solved by W.J.Bradshaw, V.L.Katis, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.94 / 1.63
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.580, 77.010, 99.880, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 24.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z1929757385 (pdb code 5ryp). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z1929757385, PDB code: 5ryp:

Fluorine binding site 1 out of 1 in 5ryp

Go back to Fluorine Binding Sites List in 5ryp
Fluorine binding site 1 out of 1 in the EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z1929757385


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z1929757385 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:44.5
occ:0.65
F A:WGM401 0.0 44.5 0.7
C10 A:WGM401 1.3 45.3 0.7
C9 A:WGM401 2.3 41.5 0.7
C6 A:WGM401 2.4 47.5 0.7
O A:TYR323 2.5 32.8 0.7
C3 A:WGM401 2.9 49.2 0.7
N A:WGM401 3.0 46.8 0.7
C A:TYR323 3.1 39.8 0.7
CB A:ASP325 3.1 60.4 0.4
O A:ASP325 3.1 48.3 0.2
N A:ASP325 3.2 58.2 0.4
N A:ASP325 3.3 48.9 0.2
C A:ARG324 3.4 53.9 0.7
CB A:TYR323 3.5 34.7 0.7
CA A:ASP325 3.5 59.5 0.4
CA A:ASP325 3.5 46.1 0.2
C A:ASP325 3.6 45.6 0.2
C8 A:WGM401 3.6 42.5 0.7
CG A:ASP325 3.7 59.1 0.4
N1 A:WGM401 3.7 47.2 0.7
N A:ARG324 3.7 47.6 0.7
CA A:TYR323 3.8 34.6 0.7
OD1 A:ASP325 3.9 65.4 0.4
O A:ARG324 3.9 59.1 0.7
CA A:ARG324 4.0 54.5 0.7
C7 A:WGM401 4.1 44.6 0.7
N A:MET312 4.3 31.0 1.0
C4 A:WGM401 4.5 47.6 0.7
OD2 A:ASP325 4.5 58.4 0.4
C1 A:WGM401 4.5 48.7 0.7
N A:ARG326 4.7 44.1 0.2
CG A:MET312 4.7 41.4 1.0
CA A:ILE311 4.7 29.6 1.0
C A:ILE311 4.8 29.4 1.0
CG A:TYR323 4.8 34.4 0.7
CB A:MET312 4.9 32.2 1.0

Reference:

W.J.Bradshaw, V.L.Katis, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi. EPB41L3 Pandda Analysis Group Deposition To Be Published.
Page generated: Sun Dec 13 12:36:37 2020

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